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        <title>Corticostriatal neurons in auditory cortex drive decisions during auditory discrimination</title>
        <author>Znamenskiy</author>
        <author>Zador</author>
      </titleStmt>
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        <bibl>
          <title>Corticostriatal neurons in auditory cortex drive decisions during auditory discrimination</title>
          <date>2013</date>
          <publisher>Nature</publisher>
          <idno type="DOI">10.1038/nature12077</idno>
          
          <idno type="record">Znamenskiy2013-corticostriatal-neurons-in-auditory-cortex-d</idno>
          <note type="staged-file">Znamenskiy2013-corticostriatal-neurons-in-auditory-cortex-d.txt, the project's staged copy</note>
          <note type="text-sha1">af4b4a71854a2295150605101bf12e58acec8b62</note>
          <note type="rights">not-redistributable</note>
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      <span xml:id="t0" type="object_of_study" ana="#object_of_study" resp="#paper">
        <label>whether the projection from auditory cortex to striatum carries the signals that drive choices during auditory discrimination</label>
        <note type="quotation-withheld">Quotation withheld because this record is not cleared for redistribution.</note>
      </span>
      <span xml:id="t1" type="research_question" ana="#research_question" resp="#paper">
        <label>how auditory representations in cortex are transformed into motor commands</label>
        <note type="quotation-withheld">Quotation withheld because this record is not cleared for redistribution.</note>
      </span>
      <span xml:id="t2" type="contribution" ana="#contribution" resp="#paper">
        <label>shows that activating corticostriatal neurons biases choices toward their preferred frequency and inactivating them biases choices away, establishing the pathway as both sufficient and necessary for the decision</label>
        <note type="quotation-withheld">Quotation withheld because this record is not cleared for redistribution.</note>
      </span>
      <span xml:id="t3" type="claim_type" ana="#claim_type" resp="#paper">
        <label>mechanism</label>
        <note type="quotation-withheld">Quotation withheld because this record is not cleared for redistribution.</note>
      </span>
      <span xml:id="t4" type="phenomenon" ana="#phenomenon" resp="#paper">
        <label>auditory perceptual decision-making</label>
        <note type="quotation-withheld">Quotation withheld because this record is not cleared for redistribution.</note>
      </span>
      <span xml:id="t5" type="method" ana="#method" resp="#paper">
        <label>electrophysiology</label>
        <term>electrophysiology</term>
        <note type="quotation-withheld">Quotation withheld because this record is not cleared for redistribution.</note>
      </span>
      <span xml:id="t6" type="mechanisms" ana="#mechanisms[0]" resp="#tagger">
        <label>mechanisms</label>
        <term>The auditory cortex-to-striatum projection carries frequency-specific acoustic information that is read out to select the motor response, so changing spiking in that projection changes the choice.</term>
        <note type="quotation-withheld">Quotation withheld because this record is not cleared for redistribution.</note>
      </span>
      <span xml:id="t7" type="mechanisms" ana="#mechanisms[1]" resp="#tagger">
        <label>mechanisms</label>
        <term>Because exciting corticostriatal cells suppresses surrounding cortex rather than exciting it, the behavioural bias must be delivered by their long-range axons to the striatum, not by recruiting other cortical output pathways.</term>
        <note type="quotation-withheld">Quotation withheld because this record is not cleared for redistribution.</note>
      </span>
      <span xml:id="t8" type="mechanisms" ana="#mechanisms[2]" resp="#tagger">
        <label>mechanisms</label>
        <term>A decision bottleneck: the small number of projection neurons that actually drive the choice provides finite bandwidth, which caps the effective pool size and hence psychophysical performance.</term>
        <note type="quotation-withheld">Quotation withheld because this record is not cleared for redistribution.</note>
      </span>
      <span xml:id="t9" type="mechanisms" ana="#mechanisms[3]" resp="#tagger" cert="1.0">
        <label>sufficiency and necessity are separated explicitly, and the direction of the necessity test is predicted before it is run</label>
        <note type="quotation-withheld">Quotation withheld because this record is not cleared for redistribution.</note>
      </span>
      <span xml:id="t10" type="mechanisms" ana="#mechanisms[4]" resp="#tagger" cert="1.0">
        <label>cell-type specificity is achieved by an intersection: a retrograde virus delivers Cre from the target region, and a Cre-dependent virus supplies the opsin in the source region</label>
        <note type="quotation-withheld">Quotation withheld because this record is not cleared for redistribution.</note>
      </span>
      <span xml:id="t11" type="mechanisms" ana="#mechanisms[5]" resp="#tagger" cert="1.0">
        <label>a failed non-specific manipulation is reported first, with three candidate explanations, and becomes the argument for targeting</label>
        <note type="quotation-withheld">Quotation withheld because this record is not cleared for redistribution.</note>
      </span>
      <span xml:id="t12" type="mechanisms" ana="#mechanisms[6]" resp="#tagger" cert="1.0">
        <label>full inactivation is deliberately avoided because compensatory plasticity would confound it, so only a patch of the tonotopic map is silenced</label>
        <note type="quotation-withheld">Quotation withheld because this record is not cleared for redistribution.</note>
      </span>
      <span xml:id="t13" type="mechanisms" ana="#mechanisms[7]" resp="#tagger" cert="1.0">
        <label>the same pathway is driven at two points - somata in cortex and axon terminals in striatum - so the result cannot depend on where the light went</label>
        <note type="quotation-withheld">Quotation withheld because this record is not cleared for redistribution.</note>
      </span>
      <span xml:id="t14" type="mechanisms" ana="#mechanisms[8]" resp="#tagger" cert="1.0">
        <label>recurrent cortical activity is pharmacologically removed while the axons are stimulated, which isolates the long-range output as the carrier of the effect</label>
        <note type="quotation-withheld">Quotation withheld because this record is not cleared for redistribution.</note>
      </span>
      <span xml:id="t15" type="mechanisms" ana="#mechanisms[9]" resp="#tagger" cert="1.0">
        <label>the behavioural effect is converted into stimulus units by fitting a logistic model, so a neural manipulation and an acoustic change become comparable</label>
        <note type="quotation-withheld">Quotation withheld because this record is not cleared for redistribution.</note>
      </span>
      <span xml:id="t16" type="mechanisms" ana="#mechanisms[10]" resp="#tagger" cert="1.0">
        <label>stimulation is restricted to a quarter of trials and still rewarded normally, to stop the animal adapting to the manipulation itself</label>
        <note type="quotation-withheld">Quotation withheld because this record is not cleared for redistribution.</note>
      </span>
      <span xml:id="t17" type="mechanisms" ana="#mechanisms[11]" resp="#tagger" cert="1.0">
        <label>tone intensity is randomised across trials specifically to block a loudness-based strategy</label>
        <note type="quotation-withheld">Quotation withheld because this record is not cleared for redistribution.</note>
      </span>
      <span xml:id="t18" type="mechanisms" ana="#mechanisms[12]" resp="#tagger" cert="1.0">
        <label>the effect size is tied to an anatomical count by combining fluorescence, a measured inactivation space constant, and cell density</label>
        <note type="quotation-withheld">Quotation withheld because this record is not cleared for redistribution.</note>
      </span>
      <span xml:id="t19" type="mechanisms" ana="#mechanisms[13]" resp="#tagger" cert="1.0">
        <label>uninjected animals receiving identical light serve as the control for both opsins separately</label>
        <note type="quotation-withheld">Quotation withheld because this record is not cleared for redistribution.</note>
      </span>
      <span xml:id="t20" type="mechanisms" ana="#mechanisms[14]" resp="#tagger" cert="0.95">
        <label>local suppression during corticostriatal excitation is used to argue the behavioural effect travels by the long-range output rather than through local circuitry</label>
        <note type="quotation-withheld">Quotation withheld because this record is not cleared for redistribution.</note>
      </span>
      <span xml:id="t21" type="limitations" ana="#limitations[0]" resp="#tagger">
        <label>Non-specific cortical activation did not give tuning-predicted biases and lacked adequate control over the relevant projection neurons.</label>
        <note>what this limits: the non-specific activation experiments: THE METHOD OF NON-SPECIFIC ACTIVATION OF DIVERSE NEURONAL POPULATIONS USED IN THESE EXPERIMENTS DOES NOT PROVIDE SUFFICIENT control over the relevant populations</note>
        <note type="quotation-withheld">Quotation withheld because this record is not cleared for redistribution.</note>
      </span>
      <span xml:id="t22" type="limitations" ana="#limitations[1]" resp="#tagger">
        <label>The stimulation biases were not statistically significant within individual sessions.</label>
        <note>what this limits: any session-level claim: THE BIASES WERE NOT SIGNIFICANT ON INDIVIDUAL SESSIONS (p&lt;0.05 ON 1/33 SESSIONS), IN PART BECAUSE THE NUMBER OF STIMULATED TRIALS PER SESSION WAS TYPICALLY SMALL (70+/-24 (s.d.) TRIALS)</note>
        <note type="quotation-withheld">Quotation withheld because this record is not cleared for redistribution.</note>
      </span>
      <span xml:id="t23" type="limitations" ana="#limitations[2]" resp="#tagger">
        <label>The inactivation effect on chronometric functions did not reach significance.</label>
        <note>what this limits: the chronometric result specifically: A SIMILAR TREND WAS REFLECTED IN THE SUBJECTS&#x27; CHRONOMETRIC FUNCTIONS BUT DID NOT REACH SIGNIFICANCE</note>
        <note type="quotation-withheld">Quotation withheld because this record is not cleared for redistribution.</note>
      </span>
      <span xml:id="t24" type="limitations" ana="#limitations[3]" resp="#tagger">
        <label>Cell counts could not be estimated for two fibres whose tracks were not found histologically.</label>
        <note>what this limits: the cell counts for two named fibres: FOR 2 FIBERS IN ONE OF THE RATS WE COULD NOT LOCATE THE TRACKS IN HISTOLOGICAL SECTIONS AND PRECISELY ESTIMATE CELL COUNTS</note>
        <note type="quotation-withheld">Quotation withheld because this record is not cleared for redistribution.</note>
      </span>
      <span xml:id="t25" type="limitations" ana="#limitations[4]" resp="#tagger">
        <label>Other parallel pathways contributing to the decision are not excluded.</label>
        <note>what this limits: any claim that this pathway is the only one: OUR RESULTS DO NOT EXCLUDE THE PARTICIPATION OF OTHER PARALLEL PATHWAYS</note>
        <note type="quotation-withheld">Quotation withheld because this record is not cleared for redistribution.</note>
      </span>
      <span xml:id="t26" type="limitations" ana="#limitations[5]" resp="#tagger" cert="1.0">
        <label>other parallel pathways are not excluded</label>
        <note>what this limits: the same scope as limitations[4] - other parallel pathways remain possible</note>
        <note type="quotation-withheld">Quotation withheld because this record is not cleared for redistribution.</note>
      </span>
      <span xml:id="t27" type="limitations" ana="#limitations[6]" resp="#tagger" cert="1.0">
        <label>individual sessions were underpowered; the effect is visible in aggregate</label>
        <note>what this limits: the same scope as limitations[1] - individual sessions are underpowered at 70+/-24 trials</note>
        <note type="quotation-withheld">Quotation withheld because this record is not cleared for redistribution.</note>
      </span>
      <span xml:id="t28" type="limitations" ana="#limitations[7]" resp="#tagger" cert="1.0">
        <label>at sites with large biases, performance was also modestly affected, possibly a ceiling effect</label>
        <note>what this limits: the sites with large choice biases: STIMULATION ALSO HAD A MODEST EFFECT ON THE SUBJECTS&#x27; PERFORMANCE AT SITES WITH LARGE CHOICE BIASES, POSSIBLY DUE TO A CEILING EFFECT</note>
        <note type="quotation-withheld">Quotation withheld because this record is not cleared for redistribution.</note>
      </span>
      <span xml:id="t29" type="limitations" ana="#limitations[8]" resp="#tagger" cert="0.85">
        <label>the chronometric counterpart of the inactivation result trended but did not reach significance</label>
        <note>what this limits: the inactivation result: it BIASED SUBJECTS&#x27; CHOICES AWAY FROM THE REWARD PORT ASSOCIATED WITH THE FREQUENCY BAND OF THE INACTIVATION SITE BUT DID NOT AFFECT the chronometric measure</note>
        <note type="quotation-withheld">Quotation withheld because this record is not cleared for redistribution.</note>
      </span>
      <span xml:id="t30" type="limitations" ana="#limitations[9]" resp="#tagger" cert="1.0">
        <label>auditory striatal neurons had only ever been characterised in anaesthetised or passively listening animals before this</label>
        <note>what this limits: every PRIOR characterisation this paper builds on: AUDITORY STRIATAL NEURONES HAVE PREVIOUSLY BEEN CHARACTERIZED IN ANAESTHETISED AND PASSIVELY LISTENING ANIMALS, NOT DURING BEHAVIOUR</note>
        <note type="quotation-withheld">Quotation withheld because this record is not cleared for redistribution.</note>
      </span>
      <span xml:id="t31" type="limitations" ana="#limitations[10]" resp="#tagger" cert="1.0">
        <label>the function of sensory-recipient striatal regions was poorly established at the outset</label>
        <note>what this limits: sensory-recipient striatal regions as a class: THE FUNCTION OF STRIATAL REGIONS WHICH RECEIVE DIRECT INPUT FROM SENSORY CORTICAL AREAS IS LESS WELL ESTABLISHED</note>
        <note type="quotation-withheld">Quotation withheld because this record is not cleared for redistribution.</note>
      </span>
      <span xml:id="t32" type="transfers" ana="#transfers[0]" resp="#tagger" cert="0.9">
        <label>the random-dot-motion logic of a graded two-alternative discrimination, remade for frequency using clouds of tones</label>
        <note type="quotation-withheld">Quotation withheld because this record is not cleared for redistribution.</note>
      </span>
      <span xml:id="t33" type="transfers" ana="#transfers[1]" resp="#tagger" cert="0.85">
        <label>the ideal observer, applied to single neurons so that cortical and striatal selectivity can be compared on one scale</label>
        <note type="quotation-withheld">Quotation withheld because this record is not cleared for redistribution.</note>
      </span>
      <span xml:id="t34" type="transfers" ana="#transfers[2]" resp="#tagger" cert="0.95">
        <label>a retrogradely transported herpes virus carrying Cre, which turns an anatomical projection into a genetically addressable cell class</label>
        <note type="quotation-withheld">Quotation withheld because this record is not cleared for redistribution.</note>
      </span>
      <span xml:id="t35" type="controls" ana="#controls[0]" resp="#tagger" cert="0.95">
        <label>the fit re-run 100 times from RANDOM starting parameters, keeping the solution with the smallest mean square error</label>
        <note>eliminates: a local minimum as the reported fit - a single optimisation run reports wherever it happens to stop, and its parameters would be a property of the starting point · outcome (stated by the tagger, no quotation): held</note>
        <note type="quotation-withheld">Quotation withheld because this record is not cleared for redistribution.</note>
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      <span xml:id="t36" type="senses" ana="#senses[0]" resp="#tagger" cert="1.0">
        <label>optogenetic activation - non-specific across a cortical population versus targeted to a projection-defined class; the first gives biases unrelated to tuning and degrades performance, the second gives biases predicted by tuning and spares it</label>
        <note type="quotation-withheld">Quotation withheld because this record is not cleared for redistribution.</note>
      </span>
      <span xml:id="t37" type="senses" ana="#senses[1]" resp="#tagger" cert="1.0">
        <label>sufficiency versus necessity - activation showing the pathway CAN drive choices, inactivation showing it normally DOES; the paper separates the two claims and tests them in that order</label>
        <note type="quotation-withheld">Quotation withheld because this record is not cleared for redistribution.</note>
      </span>
      <span xml:id="t38" type="senses" ana="#senses[2]" resp="#tagger" cert="1.0">
        <label>stimulating the pathway at the soma versus at the axon terminal; the same cells reached from either end, which is what rules out a location artefact</label>
        <note type="quotation-withheld">Quotation withheld because this record is not cleared for redistribution.</note>
      </span>
      <span xml:id="t39" type="senses" ana="#senses[3]" resp="#tagger" cert="1.0">
        <label>a behavioural effect measured as a choice bias versus as a shift in response time; the chronometric curve moves as if acoustic evidence had been added</label>
        <note type="quotation-withheld">Quotation withheld because this record is not cleared for redistribution.</note>
      </span>
      <span xml:id="t40" type="senses" ana="#senses[4]" resp="#tagger" cert="0.95">
        <label>the neuronal pool limiting psychophysical performance - as constrained by correlated firing versus by the bandwidth of the few projection neurons that drive decisions</label>
        <note type="quotation-withheld">Quotation withheld because this record is not cleared for redistribution.</note>
      </span>
      <span xml:id="t41" type="senses" ana="#senses[5]" resp="#tagger" cert="1.0">
        <label>striatal regions receiving motor and prefrontal input, whose functions are well studied, versus those receiving direct sensory cortical input, whose function was not established</label>
        <note type="quotation-withheld">Quotation withheld because this record is not cleared for redistribution.</note>
      </span>
      <span xml:id="t42" type="alternatives" ana="#alternatives.claim_type" resp="#tagger">
        <label>claim_type: mechanism</label>
        <note>a second reading reaching the same value. Recorded: mechanism — note: a second reading reaching the same value from a different sentence. Not applied - a person decides.</note>
        <note type="quotation-withheld">Quotation withheld because this record is not cleared for redistribution.</note>
      </span>
      <span xml:id="t43" type="alternatives" ana="#alternatives.method" resp="#tagger">
        <label>method: rats performing a two-alternative cloud-of-tones frequency discrimination, with tetrode recording and projection-targeted channelrhodopsin and archaerhodopsin in corticostriatal neurons</label>
        <note>a second reading DIFFERING from the recorded value. Recorded: electrophysiology — note: a second reading, verbatim-verified, disagreeing with the value on the record. Not applied - a person decides.</note>
        <note type="quotation-withheld">Quotation withheld because this record is not cleared for redistribution.</note>
      </span>
      <span xml:id="t44" type="alternatives" ana="#alternatives.phenomenon" resp="#tagger">
        <label>phenomenon: perceptual decision-making - converting an auditory representation into a motor choice</label>
        <note>a second reading DIFFERING from the recorded value. Recorded: auditory perceptual decision-making — note: a second reading, verbatim-verified, disagreeing with the value on the record. Not applied - a person decides.</note>
        <note type="quotation-withheld">Quotation withheld because this record is not cleared for redistribution.</note>
      </span>
      <span xml:id="t45" type="claim_relations" ana="#claim_relations[0]" resp="#tagger">
        <label>builds-on → perceptual decision experiments in primate area MT (ref. 16)</label>
        <note type="quotation-withheld">Quotation withheld because this record is not cleared for redistribution.</note>
      </span>
      <span xml:id="t46" type="claim_relations" ana="#claim_relations[1]" resp="#tagger">
        <label>extends → prior characterisations of auditory striatal neurones in anaesthetised and passively listening animals (refs. 14, 15)</label>
        <note type="quotation-withheld">Quotation withheld because this record is not cleared for redistribution.</note>
      </span>
      <span xml:id="t47" type="claim_relations" ana="#claim_relations[2]" resp="#tagger">
        <label>replicates → previous results on the laminar location of corticostriatal neurones (ref. 22)</label>
        <note type="quotation-withheld">Quotation withheld because this record is not cleared for redistribution.</note>
      </span>
      <span xml:id="t48" type="claim_relations" ana="#claim_relations[3]" resp="#tagger">
        <label>replicates → previously reported response-time increases on difficult trials in rats (ref. 18)</label>
        <note type="quotation-withheld">Quotation withheld because this record is not cleared for redistribution.</note>
      </span>
      <span xml:id="t49" type="claim_relations" ana="#claim_relations[4]" resp="#tagger">
        <label>builds-on → the known topography of corticostriatal projections (ref. 23)</label>
        <note type="quotation-withheld">Quotation withheld because this record is not cleared for redistribution.</note>
      </span>
      <span xml:id="t50" type="claim_relations" ana="#claim_relations[5]" resp="#tagger" cert="1.0">
        <label>extends → work on striatal regions receiving motor and prefrontal input, by asking what the sensory-recipient striatum does</label>
        <note type="quotation-withheld">Quotation withheld because this record is not cleared for redistribution.</note>
      </span>
      <span xml:id="t51" type="claim_relations" ana="#claim_relations[6]" resp="#tagger" cert="1.0">
        <label>critiques → non-specific optogenetic activation of mixed cortical populations as a way of testing a pathway&#x27;s role</label>
        <note type="quotation-withheld">Quotation withheld because this record is not cleared for redistribution.</note>
      </span>
      <span xml:id="t52" type="claim_relations" ana="#claim_relations[7]" resp="#tagger" cert="1.0">
        <label>critiques → complete-inactivation lesion designs, whose interpretation compensatory plasticity can obscure</label>
        <note>differs in: THE AXIS IS THE EXTENT OF THE INACTIVATION, AND THE REASON IS NAMED. &#x27;Rather than attempting to inactivate all corticostriatal cells - a technically difficult feat Quotation withheld - we sought instead to silence corticostriatal neurones WITHIN A RESTRICTED REGION of the tonotopic map.&#x27; The critique of whole-population lesions is not that they fail but that the preparation answers back.</note>
        <note type="quotation-withheld">Quotation withheld because this record is not cleared for redistribution.</note>
      </span>
      <span xml:id="t53" type="claim_relations" ana="#claim_relations[8]" resp="#tagger" cert="0.85">
        <label>builds-on → primate area MT microstimulation experiments, whose logic the task design is modelled on</label>
        <note type="quotation-withheld">Quotation withheld because this record is not cleared for redistribution.</note>
      </span>
      <span xml:id="t54" type="claim_relations" ana="#claim_relations[9]" resp="#tagger" cert="0.9">
        <label>extends → estimates of how few neurons animals can be trained to detect, from artificial detection to normal perception</label>
        <note type="quotation-withheld">Quotation withheld because this record is not cleared for redistribution.</note>
      </span>
      <span xml:id="t55" type="claim_relations" ana="#claim_relations[10]" resp="#tagger" cert="0.9">
        <label>supports → the account in which correlated firing limits the effective size of the neuronal pool underlying psychophysical performance</label>
        <note type="quotation-withheld">Quotation withheld because this record is not cleared for redistribution.</note>
      </span>
      <span xml:id="t56" type="concept_edges" ana="#concept_edges[0]" resp="#tagger">
        <label>EVIDENCE CORRECTED (RE-GROUNDED) · corticostriatal —causes→ choice biases</label>
        <term>corticostriatal</term>
        <term>choice biases</term>
        <note>EVIDENCE CORRECTED: RE-GROUNDED. The old span named neither endpoint. This clause names both and states the dependence - the bias scales with how many corticostriatal neurones were silenced. — strength of the relation: 0.95
Audit 2026-09-28: DOUBTFUL - read against its full span and kept, but the span writes &#x27;biased subjects&#x27; choices&#x27;, not &#x27;choice biases&#x27;.</note>
        <note type="quotation-withheld">Quotation withheld because this record is not cleared for redistribution.</note>
      </span>
      <span xml:id="t57" type="concept_edges" ana="#concept_edges[1]" resp="#tagger">
        <label>Channelrhodopsin-2 —contrasted-with→ archaerhodopsin-3</label>
        <term>Channelrhodopsin-2</term>
        <term>archaerhodopsin-3</term>
        <note>differs in: THE AXIS IS THE SIGN OF THE MANIPULATION, AND THE BIAS FOLLOWS IT. &#x27;TARGETED CHANNELRHODOPSIN-2 (ChR2)-MEDIATED STIMULATION of corticostriatal neurones during the task biased decisions in the direction predicted by the frequency tuning of the stimulated neurones, WHEREAS ARCHAERHODOPSIN-3 (ARCH)-mediated inactivation biased decisions in T[HE OPPOSITE DIRECTION].&#x27; Two opsins are not being compared as tools - they are the two signs of one experiment, and the double dissociation is the evidence. · strength of the relation: 1</note>
        <note type="quotation-withheld">Quotation withheld because this record is not cleared for redistribution.</note>
      </span>
      <span xml:id="t58" type="concept_edges" ana="#concept_edges[2]" resp="#tagger">
        <label>EVIDENCE CORRECTED (RE-GROUNDED) · corticostriatal —part-of→ auditory cortex</label>
        <term>corticostriatal</term>
        <term>auditory cortex</term>
        <note>EVIDENCE CORRECTED: RE-GROUNDED. The old span named neither endpoint. This sentence names both and places one inside the other - corticostriatal neurones IN the auditory cortex. — strength of the relation: 0.9</note>
        <note type="quotation-withheld">Quotation withheld because this record is not cleared for redistribution.</note>
      </span>
      <span xml:id="t59" type="concept_edges" ana="#concept_edges[4]" resp="#tagger">
        <label>choice biases —operationalised-as→ logistic regression</label>
        <term>choice biases</term>
        <term>logistic regression</term>
        <note>strength of the relation: 0.95
Audit 2026-09-28: DOUBTFUL - read against its full span and kept, but the span writes &#x27;subjects&#x27; choices&#x27; / &#x27;behavioural effect&#x27;, not &#x27;choice biases&#x27;.</note>
        <note type="quotation-withheld">Quotation withheld because this record is not cleared for redistribution.</note>
      </span>
      <span xml:id="t60" type="concept_edges" ana="#concept_edges[5]" resp="#tagger">
        <label>striatum —causes→ superior colliculus</label>
        <term>striatum</term>
        <term>superior colliculus</term>
        <note>strength of the relation: 0.75</note>
        <note type="quotation-withheld">Quotation withheld because this record is not cleared for redistribution.</note>
      </span>
      <span xml:id="t61" type="concept_edges" ana="#concept_edges[6]" resp="#tagger" cert="0.9">
        <label>corticostriatal —causes→ choice biases</label>
        <term>corticostriatal</term>
        <term>choice biases</term>
        <note>strength of the relation: 0.95 · note: RE-GROUNDS another row of this record: the relation was always stated, the endpoint names were not in the span.</note>
        <note type="quotation-withheld">Quotation withheld because this record is not cleared for redistribution.</note>
      </span>
      <span xml:id="t62" type="content_tags" ana="#content_tags.statistics[0]" resp="#tagger">
        <label>logistic regression</label>
        <term>logistic regression</term>
        <note type="quotation-withheld">Quotation withheld because this record is not cleared for redistribution.</note>
      </span>
      <span xml:id="t63" type="content_tags" ana="#content_tags.statistics[1]" resp="#tagger">
        <label>Wilcoxon signed-rank test</label>
        <term>Wilcoxon signed-rank test</term>
        <note type="quotation-withheld">Quotation withheld because this record is not cleared for redistribution.</note>
      </span>
      <span xml:id="t64" type="content_tags" ana="#content_tags.statistics[2]" resp="#tagger">
        <label>linear regression (ordinary least squares)</label>
        <term>linear regression (ordinary least squares)</term>
        <note type="quotation-withheld">Quotation withheld because this record is not cleared for redistribution.</note>
      </span>
      <span xml:id="t65" type="content_tags" ana="#content_tags.statistics[3]" resp="#tagger">
        <label>bootstrap</label>
        <term>bootstrap</term>
        <note type="quotation-withheld">Quotation withheld because this record is not cleared for redistribution.</note>
      </span>
      <span xml:id="t66" type="content_tags" ana="#content_tags.statistics[4]" resp="#tagger">
        <label>cross-validation</label>
        <term>cross-validation</term>
        <note type="quotation-withheld">Quotation withheld because this record is not cleared for redistribution.</note>
      </span>
      <span xml:id="t67" type="content_tags" ana="#content_tags.statistics[5]" resp="#tagger">
        <label>confidence interval</label>
        <term>confidence interval</term>
        <note type="quotation-withheld">Quotation withheld because this record is not cleared for redistribution.</note>
      </span>
      <span xml:id="t68" type="content_tags" ana="#content_tags.statistics[6]" resp="#tagger">
        <label>p-value</label>
        <term>p-value</term>
        <note type="quotation-withheld">Quotation withheld because this record is not cleared for redistribution.</note>
      </span>
      <span xml:id="t69" type="content_tags" ana="#content_tags.statistics[7]" resp="#tagger">
        <label>standard error</label>
        <term>standard error</term>
        <note type="quotation-withheld">Quotation withheld because this record is not cleared for redistribution.</note>
      </span>
      <span xml:id="t70" type="content_tags" ana="#content_tags.statistics[8]" resp="#tagger">
        <label>mean squared error minimisation</label>
        <term>mean squared error minimisation</term>
        <note type="quotation-withheld">Quotation withheld because this record is not cleared for redistribution.</note>
      </span>
      <span xml:id="t71" type="content_tags" ana="#content_tags.statistics[9]" resp="#tagger" cert="1.0">
        <label>logistic regression model</label>
        <term>logistic regression model</term>
        <note type="quotation-withheld">Quotation withheld because this record is not cleared for redistribution.</note>
      </span>
      <span xml:id="t72" type="content_tags" ana="#content_tags.statistics[10]" resp="#tagger" cert="1.0">
        <label>signed-rank test</label>
        <term>signed-rank test</term>
        <note type="quotation-withheld">Quotation withheld because this record is not cleared for redistribution.</note>
      </span>
      <span xml:id="t73" type="content_tags" ana="#content_tags.statistics[11]" resp="#tagger" cert="0.9">
        <label>ideal observer</label>
        <term>ideal observer</term>
        <note type="quotation-withheld">Quotation withheld because this record is not cleared for redistribution.</note>
      </span>
      <span xml:id="t74" type="content_tags" ana="#content_tags.statistics[12]" resp="#tagger" cert="1.0">
        <label>slope of the psychometric curve</label>
        <term>slope of the psychometric curve</term>
        <note type="quotation-withheld">Quotation withheld because this record is not cleared for redistribution.</note>
      </span>
      <span xml:id="t75" type="content_tags" ana="#content_tags.findings[0]" resp="#tagger">
        <label>Optogenetic activation of auditory corticostriatal neurons shifted rats&#x27; choices toward the reward port associated with the frequency the stimulated neurons preferred.</label>
        <note type="quotation-withheld">Quotation withheld because this record is not cleared for redistribution.</note>
      </span>
      <span xml:id="t76" type="content_tags" ana="#content_tags.findings[1]" resp="#tagger">
        <label>Arch-mediated silencing of corticostriatal neurons pushed choices away from the port matching the inactivated site&#x27;s frequency band while leaving psychometric slope (sensitivity) unchanged.</label>
        <note type="quotation-withheld">Quotation withheld because this record is not cleared for redistribution.</note>
      </span>
      <span xml:id="t77" type="content_tags" ana="#content_tags.findings[2]" resp="#tagger">
        <label>Non-specific (untargeted) activation of auditory cortex produced biases whose direction did not follow the frequency tuning of neurons near the fiber.</label>
        <note type="quotation-withheld">Quotation withheld because this record is not cleared for redistribution.</note>
      </span>
      <span xml:id="t78" type="content_tags" ana="#content_tags.findings[3]" resp="#tagger">
        <label>Non-specific cortical activation also impaired task performance, flattening the psychometric curve.</label>
        <note type="quotation-withheld">Quotation withheld because this record is not cleared for redistribution.</note>
      </span>
      <span xml:id="t79" type="content_tags" ana="#content_tags.findings[4]" resp="#tagger">
        <label>Stimulating corticostriatal axons still biased choices after the auditory cortex was pharmacologically silenced, showing the effect travels through the long-range striatal projection rather than through recurrent cortical circuitry.</label>
        <note type="quotation-withheld">Quotation withheld because this record is not cleared for redistribution.</note>
      </span>
      <span xml:id="t80" type="content_tags" ana="#content_tags.findings[5]" resp="#tagger">
        <label>Silencing only about one third to eight tenths of one percent of the local neurons (roughly 1,000-2,400 Arch-expressing cells) was enough to produce robust choice biases.</label>
        <note type="quotation-withheld">Quotation withheld because this record is not cleared for redistribution.</note>
      </span>
      <span xml:id="t81" type="content_tags" ana="#content_tags.findings[6]" resp="#tagger">
        <label>Corticostriatal stimulation also shifted response-time (chronometric) curves exactly as adding real acoustic evidence for the site&#x27;s preferred frequency would.</label>
        <note type="quotation-withheld">Quotation withheld because this record is not cleared for redistribution.</note>
      </span>
      <span xml:id="t82" type="content_tags" ana="#content_tags.findings[7]" resp="#tagger">
        <label>Ideal-observer analysis showed that cortical and striatal neurons had similar stimulus selectivity.</label>
        <note type="quotation-withheld">Quotation withheld because this record is not cleared for redistribution.</note>
      </span>
      <span xml:id="t83" type="content_tags" ana="#content_tags.findings[8]" resp="#tagger" cert="1.0">
        <label>activating corticostriatal neurons biased choices toward the port associated with the stimulation site&#x27;s preferred frequency</label>
        <note type="quotation-withheld">Quotation withheld because this record is not cleared for redistribution.</note>
      </span>
      <span xml:id="t84" type="content_tags" ana="#content_tags.findings[9]" resp="#tagger" cert="1.0">
        <label>inactivating them biased choices away from that port, as predicted</label>
        <note type="quotation-withheld">Quotation withheld because this record is not cleared for redistribution.</note>
      </span>
      <span xml:id="t85" type="content_tags" ana="#content_tags.findings[10]" resp="#tagger" cert="1.0">
        <label>non-specific cortical activation produced biases whose direction the tuning near the fiber did not predict</label>
        <note type="quotation-withheld">Quotation withheld because this record is not cleared for redistribution.</note>
      </span>
      <span xml:id="t86" type="content_tags" ana="#content_tags.findings[11]" resp="#tagger" cert="1.0">
        <label>stimulating corticostriatal axons in the striatum reproduced the effect from the other end of the pathway</label>
        <note type="quotation-withheld">Quotation withheld because this record is not cleared for redistribution.</note>
      </span>
      <span xml:id="t87" type="content_tags" ana="#content_tags.findings[12]" resp="#tagger" cert="1.0">
        <label>the bias survived pharmacological silencing of the cortex, so it is carried by the long-range output rather than recurrent cortical activity</label>
        <note type="quotation-withheld">Quotation withheld because this record is not cleared for redistribution.</note>
      </span>
      <span xml:id="t88" type="content_tags" ana="#content_tags.findings[13]" resp="#tagger" cert="1.0">
        <label>stimulation shifted chronometric curves as if acoustic evidence favouring that choice had been added</label>
        <note type="quotation-withheld">Quotation withheld because this record is not cleared for redistribution.</note>
      </span>
      <span xml:id="t89" type="content_tags" ana="#content_tags.findings[14]" resp="#tagger" cert="1.0">
        <label>84% of targeted neurons were in layer V</label>
        <note type="quotation-withheld">Quotation withheld because this record is not cleared for redistribution.</note>
      </span>
      <span xml:id="t90" type="content_tags" ana="#content_tags.findings[15]" resp="#tagger" cert="1.0">
        <label>robust biases appeared at sites with 1040-2444 Arch-expressing cells, 0.35-0.83% of the local population</label>
        <note type="quotation-withheld">Quotation withheld because this record is not cleared for redistribution.</note>
      </span>
      <span xml:id="t91" type="content_tags" ana="#content_tags.findings[16]" resp="#tagger" cert="1.0">
        <label>silencing that minute fraction changed behaviour, suggesting a privileged role for these cells</label>
        <note type="quotation-withheld">Quotation withheld because this record is not cleared for redistribution.</note>
      </span>
      <span xml:id="t92" type="content_tags" ana="#content_tags.findings[17]" resp="#tagger" cert="1.0">
        <label>inactivation efficiency decayed with a space constant of about 564 micrometres</label>
        <note type="quotation-withheld">Quotation withheld because this record is not cleared for redistribution.</note>
      </span>
      <span xml:id="t93" type="content_tags" ana="#content_tags.findings[18]" resp="#tagger" cert="1.0">
        <label>cortical and striatal neurons showed similar stimulus selectivity, so the striatum preserves the information needed for the task</label>
        <note type="quotation-withheld">Quotation withheld because this record is not cleared for redistribution.</note>
      </span>
      <span xml:id="t94" type="content_tags" ana="#content_tags.findings[19]" resp="#tagger" cert="1.0">
        <label>targeted stimulation left psychophysical sensitivity intact, unlike non-specific stimulation</label>
        <note type="quotation-withheld">Quotation withheld because this record is not cleared for redistribution.</note>
      </span>
      <span xml:id="t95" type="content_tags" ana="#content_tags.findings[20]" resp="#tagger" cert="1.0">
        <label>no biases appeared in uninjected animals given identical light</label>
        <note type="quotation-withheld">Quotation withheld because this record is not cleared for redistribution.</note>
      </span>
      <span xml:id="t96" type="content_tags" ana="#content_tags.findings[21]" resp="#tagger" cert="1.0">
        <label>exciting corticostriatal neurons suppressed local cortical activity overall</label>
        <note type="quotation-withheld">Quotation withheld because this record is not cleared for redistribution.</note>
      </span>
      <span xml:id="t97" type="content_tags" ana="#content_tags.definitions[0]" resp="#tagger">
        <label>cloud of tones stimulus</label>
        <term>cloud of tones stimulus</term>
        <note type="quotation-withheld">Quotation withheld because this record is not cleared for redistribution.</note>
      </span>
      <span xml:id="t98" type="content_tags" ana="#content_tags.definitions[1]" resp="#tagger">
        <label>stimulus strength r</label>
        <term>stimulus strength r</term>
        <note type="quotation-withheld">Quotation withheld because this record is not cleared for redistribution.</note>
      </span>
      <span xml:id="t99" type="content_tags" ana="#content_tags.definitions[2]" resp="#tagger">
        <label>preferred frequency</label>
        <term>preferred frequency</term>
        <note type="quotation-withheld">Quotation withheld because this record is not cleared for redistribution.</note>
      </span>
      <span xml:id="t100" type="content_tags" ana="#content_tags.definitions[3]" resp="#tagger">
        <label>anti-bias</label>
        <term>anti-bias</term>
        <note type="quotation-withheld">Quotation withheld because this record is not cleared for redistribution.</note>
      </span>
      <span xml:id="t101" type="content_tags" ana="#content_tags.definitions[5]" resp="#tagger" cert="1.0">
        <label>cloud of tones</label>
        <term>cloud of tones</term>
        <note type="quotation-withheld">Quotation withheld because this record is not cleared for redistribution.</note>
      </span>
      <span xml:id="t102" type="content_tags" ana="#content_tags.definitions[6]" resp="#tagger" cert="1.0">
        <label>anti-bias</label>
        <term>anti-bias</term>
        <note type="quotation-withheld">Quotation withheld because this record is not cleared for redistribution.</note>
      </span>
      <span xml:id="t103" type="content_tags" ana="#content_tags.definitions[7]" resp="#tagger" cert="0.9">
        <label>two alternative choice</label>
        <term>two alternative choice</term>
        <note type="quotation-withheld">Quotation withheld because this record is not cleared for redistribution.</note>
      </span>
      <span xml:id="t104" type="content_tags" ana="#content_tags.definitions[8]" resp="#tagger">
        <label>motor component of the response time</label>
        <term>motor component of the response time</term>
        <note type="quotation-withheld">Quotation withheld because this record is not cleared for redistribution.</note>
      </span>
      <span xml:id="t105" type="content_tags" ana="#content_tags.definitions[9]" resp="#tagger">
        <label>magnitude of modulation of response times</label>
        <term>magnitude of modulation of response times</term>
        <note type="quotation-withheld">Quotation withheld because this record is not cleared for redistribution.</note>
      </span>
      <span xml:id="t106" type="content_tags" ana="#content_tags.variables[0]" resp="#tagger">
        <label>light activation</label>
        <term>light activation</term>
        <note type="quotation-withheld">Quotation withheld because this record is not cleared for redistribution.</note>
      </span>
      <span xml:id="t107" type="content_tags" ana="#content_tags.variables[1]" resp="#tagger">
        <label>target octave</label>
        <term>target octave</term>
        <note type="quotation-withheld">Quotation withheld because this record is not cleared for redistribution.</note>
      </span>
      <span xml:id="t108" type="content_tags" ana="#content_tags.variables[2]" resp="#tagger">
        <label>choice bias</label>
        <term>choice bias</term>
        <note type="quotation-withheld">Quotation withheld because this record is not cleared for redistribution.</note>
      </span>
      <span xml:id="t109" type="content_tags" ana="#content_tags.variables[3]" resp="#tagger">
        <label>response time</label>
        <term>response time</term>
        <note type="quotation-withheld">Quotation withheld because this record is not cleared for redistribution.</note>
      </span>
      <span xml:id="t110" type="content_tags" ana="#content_tags.variables[4]" resp="#tagger">
        <label>sound intensity</label>
        <term>sound intensity</term>
        <note type="quotation-withheld">Quotation withheld because this record is not cleared for redistribution.</note>
      </span>
      <span xml:id="t111" type="content_tags" ana="#content_tags.variables[5]" resp="#tagger">
        <label>mask LED</label>
        <term>mask LED</term>
        <note type="quotation-withheld">Quotation withheld because this record is not cleared for redistribution.</note>
      </span>
      <span xml:id="t112" type="content_tags" ana="#content_tags.variables[6]" resp="#tagger">
        <label>number of Arch-expressing neurones</label>
        <term>number of Arch-expressing neurones</term>
        <note type="quotation-withheld">Quotation withheld because this record is not cleared for redistribution.</note>
      </span>
      <span xml:id="t113" type="content_tags" ana="#content_tags.variables[7]" resp="#tagger" cert="0.9">
        <label>stimulus strength</label>
        <term>stimulus strength</term>
        <note type="quotation-withheld">Quotation withheld because this record is not cleared for redistribution.</note>
      </span>
      <span xml:id="t114" type="content_tags" ana="#content_tags.variables[8]" resp="#tagger" cert="1.0">
        <label>choice biases</label>
        <term>choice biases</term>
        <note type="quotation-withheld">Quotation withheld because this record is not cleared for redistribution.</note>
      </span>
      <span xml:id="t115" type="content_tags" ana="#content_tags.variables[9]" resp="#tagger" cert="1.0">
        <label>preferred frequency</label>
        <term>preferred frequency</term>
        <note type="quotation-withheld">Quotation withheld because this record is not cleared for redistribution.</note>
      </span>
      <span xml:id="t116" type="content_tags" ana="#content_tags.variables[10]" resp="#tagger" cert="0.9">
        <label>response times</label>
        <term>response times</term>
        <note type="quotation-withheld">Quotation withheld because this record is not cleared for redistribution.</note>
      </span>
      <span xml:id="t117" type="content_tags" ana="#content_tags.quantities[0]" resp="#tagger">
        <label>84% — share of ChR2-expressing neurons that lay in cortical layer V after the HSV1-Cre/AAV targeting</label>
        <note type="quotation-withheld">Quotation withheld because this record is not cleared for redistribution.</note>
      </span>
      <span xml:id="t118" type="content_tags" ana="#content_tags.quantities[1]" resp="#tagger">
        <label>0.35–0.83% — fraction of neurons in the illuminated volume that had to be silenced to yield robust choice biases</label>
        <note type="quotation-withheld">Quotation withheld because this record is not cleared for redistribution.</note>
      </span>
      <span xml:id="t119" type="content_tags" ana="#content_tags.quantities[2]" resp="#tagger">
        <label>~564 μ m — space constant of the decay of inactivation efficiency with distance from the fiber</label>
        <note type="quotation-withheld">Quotation withheld because this record is not cleared for redistribution.</note>
      </span>
      <span xml:id="t120" type="content_tags" ana="#content_tags.quantities[3]" resp="#tagger">
        <label>36/57 sites, p = 0.015 — proportion of non-specific cortical stimulation sites producing contralateral biases, and its significance</label>
        <note type="quotation-withheld">Quotation withheld because this record is not cleared for redistribution.</note>
      </span>
      <span xml:id="t121" type="content_tags" ana="#content_tags.quantities[4]" resp="#tagger">
        <label>p = 0.016 — significance of the choice bias from corticostriatal axon stimulation while the cortex was pharmacologically inactivated</label>
        <note type="quotation-withheld">Quotation withheld because this record is not cleared for redistribution.</note>
      </span>
      <span xml:id="t122" type="content_tags" ana="#content_tags.quantities[5]" resp="#tagger">
        <label>20–50 ms — size of the response-time increase on difficult trials</label>
        <note type="quotation-withheld">Quotation withheld because this record is not cleared for redistribution.</note>
      </span>
      <span xml:id="t123" type="content_tags" ana="#content_tags.quantities[6]" resp="#tagger">
        <label>70±24 (s.d.) trials — typical number of stimulated trials per session, explaining why single-session biases rarely reached significance</label>
        <note type="quotation-withheld">Quotation withheld because this record is not cleared for redistribution.</note>
      </span>
      <span xml:id="t124" type="content_tags" ana="#content_tags.quantities[7]" resp="#tagger">
        <label>4 of 201 — cells that responded to blue-light pulses on more than half of trials, i.e. the identified light-driven corticostriatal population</label>
        <note type="quotation-withheld">Quotation withheld because this record is not cleared for redistribution.</note>
      </span>
      <span xml:id="t125" type="content_tags" ana="#content_tags.quantities[8]" resp="#tagger">
        <label>25% — proportion of trials on which photostimulation was delivered, capped to limit behavioural adaptation</label>
        <note type="quotation-withheld">Quotation withheld because this record is not cleared for redistribution.</note>
      </span>
      <span xml:id="t126" type="content_tags" ana="#content_tags.quantities[9]" resp="#tagger" cert="1.0">
        <label>5-40 kHz over three octaves — the stimulus range, split into low and high target octaves</label>
        <note type="quotation-withheld">Quotation withheld because this record is not cleared for redistribution.</note>
      </span>
      <span xml:id="t127" type="content_tags" ana="#content_tags.quantities[10]" resp="#tagger" cert="1.0">
        <label>84% — targeted ChR2-expressing neurons located in layer V</label>
        <note type="quotation-withheld">Quotation withheld because this record is not cleared for redistribution.</note>
      </span>
      <span xml:id="t128" type="content_tags" ana="#content_tags.quantities[11]" resp="#tagger" cert="1.0">
        <label>1040-2444 neurones, 0.35-0.83% — Arch-expressing cells within 1 mm producing robust biases, as a fraction of the local population</label>
        <note type="quotation-withheld">Quotation withheld because this record is not cleared for redistribution.</note>
      </span>
      <span xml:id="t129" type="content_tags" ana="#content_tags.quantities[12]" resp="#tagger" cert="0.85">
        <label>~564 μ m — space constant of inactivation efficiency</label>
        <note type="quotation-withheld">Quotation withheld because this record is not cleared for redistribution.</note>
      </span>
      <span xml:id="t130" type="content_tags" ana="#content_tags.quantities[13]" resp="#tagger" cert="1.0">
        <label>25% — share of trials carrying photostimulation, capped to prevent adaptation</label>
        <note type="quotation-withheld">Quotation withheld because this record is not cleared for redistribution.</note>
      </span>
      <span xml:id="t131" type="content_tags" ana="#content_tags.quantities[14]" resp="#tagger" cert="1.0">
        <label>70±24 trials — stimulated trials per session, the reason single sessions were underpowered</label>
        <note type="quotation-withheld">Quotation withheld because this record is not cleared for redistribution.</note>
      </span>
      <span xml:id="t132" type="content_tags" ana="#content_tags.quantities[15]" resp="#tagger" cert="1.0">
        <label>45-75 dB (SPL) — the randomised intensity range blocking a loudness strategy</label>
        <note type="quotation-withheld">Quotation withheld because this record is not cleared for redistribution.</note>
      </span>
      <span xml:id="t133" type="content_tags" ana="#content_tags.quantities[16]" resp="#tagger" cert="1.0">
        <label>30 ms tones at 100 Hz — the cloud-of-tones stimulus timing</label>
        <note type="quotation-withheld">Quotation withheld because this record is not cleared for redistribution.</note>
      </span>
    </spanGrp>
  </standOff>
  <text>
    <body>
      <p><note type="rights">The full text of this article is not redistributable, so it is
      not included here. The evidence sentences are withheld with it; the tag layer and its
      grounding status remain. The article itself is at https://doi.org/10.1038/nature12077.</note></p>
    </body>
  </text>
</TEI>
