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        <title>GENETICS OF NATURAL POPULATIONS. XII. EXPERIMENTAL REPRODUCTION OF SOME OF THE CHANGES CAUSED BY NATURAL SELECTION IN CERTAIN POPULATIONS OF DROSOPHILA PSEUDOOBSCURA</title>
        <author>Sewall Wright</author>
        <author>Theodosius Dobzhansky</author>
      </titleStmt>
      <publicationStmt>
        <p>Tag layer of the DHSS Meta-Tagging Project. The article text is reproduced from the
           staged copy named in sourceDesc and is not altered; the tags are held separately in
           standOff so that overlapping and nested spans are preserved.</p>
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        <bibl>
          <title>GENETICS OF NATURAL POPULATIONS. XII. EXPERIMENTAL REPRODUCTION OF SOME OF THE CHANGES CAUSED BY NATURAL SELECTION IN CERTAIN POPULATIONS OF DROSOPHILA PSEUDOOBSCURA</title>
          <date>1946</date>
          <publisher>Genetics</publisher>
          <idno type="DOI">10.1093/genetics/31.2.125</idno>
          
          <idno type="record">wright1946-genetics-of-natural-populations-xi</idno>
          <note type="staged-file">wright1946-genetics-of-natural-populations-xi.txt, the project's staged copy</note>
          <note type="text-sha1">fd5a601c1d9431d7e4742c4c828b558d3fb58235</note>
          <note type="rights">open-access</note>
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      <textClass><keywords><term>population-genetics</term></keywords></textClass>
      <particDesc>
        <person xml:id="paper"><p>the paper's own words</p></person>
        <person xml:id="tagger"><p>the tag layer; a sentence written by the tagger about the
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              who="build_paper_edition.py">0 spans located by searching the stored text for the quote's exact words, allowing any whitespace between them</change>
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      <span xml:id="t0" type="claim_type" ana="#claim_type" resp="#paper">
        <label>mechanism</label>
        <note type="quotation-withheld">Quotation withheld because this record is not cleared for redistribution.</note>
      </span>
      <span xml:id="t1" type="phenomenon" ana="#phenomenon" resp="#paper">
        <label>seasonal cycles in chromosomal inversion frequencies</label>
        <note type="quotation-withheld">Quotation withheld because this record is not cleared for redistribution.</note>
      </span>
      <span xml:id="t2" type="method" ana="#method" resp="#paper">
        <label>experiment</label>
        <term>experiment</term>
        <note type="quotation-withheld">Quotation withheld because this record is not cleared for redistribution.</note>
      </span>
      <span xml:id="t3" type="mechanisms" ana="#mechanisms[0]" resp="#tagger">
        <label>mechanisms</label>
        <term>Heterozygote superiority: because ST/CH heterozygotes are fitter than either homozygote, selection drives the population towards an intermediate equilibrium of chromosome frequencies rather than fixation.</term>
        <note type="quotation-withheld">Quotation withheld because this record is not cleared for redistribution.</note>
      </span>
      <span xml:id="t4" type="mechanisms" ana="#mechanisms[1]" resp="#tagger">
        <label>mechanisms</label>
        <term>The inversions themselves are adaptively neutral, but they lock up different gene complexes that adapt their carriers to different seasonal environments, so seasonal change in the environment shifts their frequencies.</term>
        <note type="quotation-withheld">Quotation withheld because this record is not cleared for redistribution.</note>
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      <span xml:id="t5" type="mechanisms" ana="#mechanisms[2]" resp="#tagger">
        <label>mechanisms</label>
        <term>Frequency-dependent selection through niche filling: a rare genotype occupies only the niches it is best adapted to and is favoured, but when abundant it must spill into niches it fits poorly and is selected against.</term>
        <note type="quotation-withheld">Quotation withheld because this record is not cleared for redistribution.</note>
      </span>
      <span xml:id="t6" type="limitations" ana="#limitations[0]" resp="#tagger">
        <label>Absence of significant change at the low temperature may reflect too few sampling intervals rather than genuinely constant frequencies.</label>
        <note>what this limits: the low-temperature null: THIS DOES NOT IMPLY THAT THERE WERE NO CHANGES BUT MERELY THAT ANY CHANGES WERE TOO SMALL TO BE DETECTED WITH CONFIDENCE IN THE SMALL NUMBER OF INTERVALS</note>
        <note type="quotation-withheld">Quotation withheld because this record is not cleared for redistribution.</note>
      </span>
      <span xml:id="t7" type="limitations" ana="#limitations[1]" resp="#tagger">
        <label>The data cannot discriminate among the possible selective models (constant selective values, sex-differential selection, frequency-dependent values).</label>
        <note>what this limits: any choice among the selective models: UNFORTUNATELY THE DATA AT HAND DO NOT YIELD A UNIQUE INTERPRETATION</note>
        <note type="quotation-withheld">Quotation withheld because this record is not cleared for redistribution.</note>
      </span>
      <span xml:id="t8" type="limitations" ana="#limitations[2]" resp="#tagger">
        <label>The spring reversal seen in nature was not reproduced and its causes remain unknown.</label>
        <note>what this limits: the correspondence with the wild population: the spring reversal was not reproduced, and THERE ARE IMPORTANT FACTORS YET TO BE DISCOVERED</note>
        <note type="quotation-withheld">Quotation withheld because this record is not cleared for redistribution.</note>
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      <span xml:id="t9" type="limitations" ana="#limitations[3]" resp="#tagger" cert="1.0">
        <label>A counting assumption is made, stated to be false in some strains, and the direction of the resulting error is given: the tabulated numbers are minima.</label>
        <note>what this limits: the counts of kinds of chromosomes in table 2: they rest on an assumption the authors state is violated in some strains, so the numbers are minima rather than estimates</note>
        <note type="quotation-withheld">Quotation withheld because this record is not cleared for redistribution.</note>
      </span>
      <span xml:id="t10" type="limitations" ana="#limitations[4]" resp="#tagger" cert="1.0">
        <label>The baseline the experiment is compared against is inferred rather than observed, and the authors offer that as one of two explanations for the unexpected control differences.</label>
        <note>what this limits: the control samples as showing the initial composition: the authors note the initial population&#x27;s composition is inferred from its parents, and offer sampling error as the alternative explanation</note>
        <note type="quotation-withheld">Quotation withheld because this record is not cleared for redistribution.</note>
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      <span xml:id="t11" type="controls" ana="#controls[0]" resp="#tagger" cert="0.85">
        <label>a Control sample whose gene-arrangement frequencies should match the initial population, against which the experimental cages are read</label>
        <note>eliminates: drift and sampling as the explanation of a frequency change - the Control sample is the one that should show no change, and it is what makes a change elsewhere readable · outcome (stated by the tagger, no quotation): held</note>
        <note type="quotation-withheld">Quotation withheld because this record is not cleared for redistribution.</note>
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      <span xml:id="t12" type="concepts" ana="#concepts[0]" resp="#paper">
        <label>gene arrangement</label>
        <term>gene arrangement</term>
        <note type="quotation-withheld">Quotation withheld because this record is not cleared for redistribution.</note>
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      <span xml:id="t13" type="concepts" ana="#concepts[1]" resp="#paper">
        <label>Standard</label>
        <term>Standard</term>
        <note type="quotation-withheld">Quotation withheld because this record is not cleared for redistribution.</note>
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      <span xml:id="t14" type="concepts" ana="#concepts[2]" resp="#paper">
        <label>population cage</label>
        <term>population cage</term>
        <note type="quotation-withheld">Quotation withheld because this record is not cleared for redistribution.</note>
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      <span xml:id="t15" type="senses" ana="#senses[0]" resp="#tagger" cert="1.0">
        <label>evidence of selection - a TWO-PART criterion: the average rate of change per generation AND the regression of that rate on chromosome frequency, both of which must be considered</label>
        <note type="quotation-withheld">Quotation withheld because this record is not cleared for redistribution.</note>
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      <span xml:id="t16" type="senses" ana="#senses[1]" resp="#tagger" cert="1.0">
        <label>evidence of selection - AS A REGRESSION OF RATE ON FREQUENCY, which the paper says indicates selection EVEN IF the average does not differ significantly from zero</label>
        <note>about this quote: THE QUOTE CONTINUES A SENTENCE THAT THIS COPY CUTS IN TWO - a running head and a stray full stop stand between it and the words it follows, which read &#x27;obviously indicates a selective&#x27; and, after the head, &#x27;process,&#x27;.</note>
        <note type="quotation-withheld">Quotation withheld because this record is not cleared for redistribution.</note>
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      <span xml:id="t17" type="senses" ana="#senses[2]" resp="#tagger" cert="1.0">
        <label>initial population composition - not measured but INFERRED from the composition of the parents, while the control sample describes something else</label>
        <note type="quotation-withheld">Quotation withheld because this record is not cleared for redistribution.</note>
      </span>
      <span xml:id="t18" type="claim_relations" ana="#claim_relations[0]" resp="#tagger">
        <label>builds-on → L&#x27;Heritier and Teissier&#x27;s population cage</label>
        <note type="quotation-withheld">Quotation withheld because this record is not cleared for redistribution.</note>
      </span>
      <span xml:id="t19" type="claim_relations" ana="#claim_relations[1]" resp="#tagger">
        <label>contradicts → Hovanitz (1944) migration explanation of the seasonal changes at Pinon Flats and Andreas Canyon</label>
        <note type="quotation-withheld">Quotation withheld because this record is not cleared for redistribution.</note>
      </span>
      <span xml:id="t20" type="concept_edges" ana="#concept_edges[0]" resp="#tagger">
        <label>Standard —is-a→ gene arrangement</label>
        <term>Standard</term>
        <term>gene arrangement</term>
        <note>strength of the relation: 1</note>
        <note type="quotation-withheld">Quotation withheld because this record is not cleared for redistribution.</note>
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      <span xml:id="t21" type="content_tags" ana="#content_tags.statistics[0]" resp="#tagger">
        <label>chi-squared</label>
        <term>chi-squared</term>
        <note type="quotation-withheld">Quotation withheld because this record is not cleared for redistribution.</note>
      </span>
      <span xml:id="t22" type="content_tags" ana="#content_tags.statistics[1]" resp="#tagger">
        <label>t-test (Student&#x27;s)</label>
        <term>t-test (Student&#x27;s)</term>
        <note type="quotation-withheld">Quotation withheld because this record is not cleared for redistribution.</note>
      </span>
      <span xml:id="t23" type="content_tags" ana="#content_tags.statistics[2]" resp="#tagger">
        <label>regression</label>
        <term>regression</term>
        <note type="quotation-withheld">Quotation withheld because this record is not cleared for redistribution.</note>
      </span>
      <span xml:id="t24" type="content_tags" ana="#content_tags.statistics[3]" resp="#tagger">
        <label>F-test</label>
        <term>F-test</term>
        <note type="quotation-withheld">Quotation withheld because this record is not cleared for redistribution.</note>
      </span>
      <span xml:id="t25" type="content_tags" ana="#content_tags.statistics[4]" resp="#tagger">
        <label>least squares</label>
        <term>least squares</term>
        <note type="quotation-withheld">Quotation withheld because this record is not cleared for redistribution.</note>
      </span>
      <span xml:id="t26" type="content_tags" ana="#content_tags.statistics[5]" resp="#tagger">
        <label>p-value</label>
        <term>p-value</term>
        <note type="quotation-withheld">Quotation withheld because this record is not cleared for redistribution.</note>
      </span>
      <span xml:id="t27" type="content_tags" ana="#content_tags.statistics[6]" resp="#tagger">
        <label>variance</label>
        <term>variance</term>
        <note type="quotation-withheld">Quotation withheld because this record is not cleared for redistribution.</note>
      </span>
      <span xml:id="t28" type="content_tags" ana="#content_tags.findings[0]" resp="#tagger">
        <label>In population cages held at 25°C the frequency of the Standard gene arrangement rose highly significantly at the expense of the other arrangements, especially Chiricahua, whereas at 16.5°C mean frequencies did not change significantly.</label>
        <note type="quotation-withheld">Quotation withheld because this record is not cleared for redistribution.</note>
      </span>
      <span xml:id="t29" type="content_tags" ana="#content_tags.findings[1]" resp="#tagger">
        <label>The rate of frequency change per generation regressed negatively on frequency, meaning each chromosome type gained when it was rare and lost when it became common.</label>
        <note type="quotation-withheld">Quotation withheld because this record is not cleared for redistribution.</note>
      </span>
      <span xml:id="t30" type="content_tags" ana="#content_tags.findings[2]" resp="#tagger">
        <label>For cages containing only Standard and Chiricahua at 25°C, relative selective values of 0.70 for ST/ST, 1.00 for ST/CH and 0.30 for CH/CH reproduce the observed changes and put equilibrium at 70 percent Standard.</label>
        <note type="quotation-withheld">Quotation withheld because this record is not cleared for redistribution.</note>
      </span>
      <span xml:id="t31" type="content_tags" ana="#content_tags.findings[3]" resp="#tagger">
        <label>With all three chromosome types present, least-squares selective values (0.43 ST/ST, 0.05 AR/AR, 0.21 CH/CH, 1.30 ST/AR, 1.00 ST/CH, 0.71 AR/CH) place equilibrium at 53 percent Standard, 34 percent Arrowhead and 13 percent Chiricahua, and the assumption that the three heterozygotes are equally fit yields impossible values.</label>
        <note type="quotation-withheld">Quotation withheld because this record is not cleared for redistribution.</note>
      </span>
      <span xml:id="t32" type="content_tags" ana="#content_tags.findings[4]" resp="#tagger">
        <label>The data cannot discriminate equal selection in the two sexes from very unequal selection: values of 1.00:1.00:0.60 in females with 0.40:1.00:0 in males fit the observations as well as the sex-averaged values.</label>
        <note type="quotation-withheld">Quotation withheld because this record is not cleared for redistribution.</note>
      </span>
      <span xml:id="t33" type="content_tags" ana="#content_tags.findings[5]" resp="#tagger">
        <label>Because the cages at 25°C and 16.5°C were stocked with sibs, the presence of change at the high temperature and its absence at the low temperature can be attributed to temperature alone.</label>
        <note type="quotation-withheld">Quotation withheld because this record is not cleared for redistribution.</note>
      </span>
      <span xml:id="t34" type="content_tags" ana="#content_tags.findings[6]" resp="#tagger">
        <label>Varying the food regime (two jars every three days versus one jar every five days) produced no consistent difference in the direction or size of the frequency changes.</label>
        <note type="quotation-withheld">Quotation withheld because this record is not cleared for redistribution.</note>
      </span>
      <span xml:id="t35" type="content_tags" ana="#content_tags.findings[7]" resp="#tagger">
        <label>In the 14th experiment Standard rose from 31 to 55 percent while Arrowhead fell from 69 to 45 percent.</label>
        <note type="quotation-withheld">Quotation withheld because this record is not cleared for redistribution.</note>
      </span>
      <span xml:id="t36" type="content_tags" ana="#content_tags.findings[8]" resp="#tagger">
        <label>The spring reversal seen in nature, in which Standard falls and Chiricahua rises, could not be reproduced in any population cage.</label>
        <note type="quotation-withheld">Quotation withheld because this record is not cleared for redistribution.</note>
      </span>
      <span xml:id="t37" type="content_tags" ana="#content_tags.findings[9]" resp="#tagger">
        <label>Measured fly dispersal rates are far too slow for migration from Keen Camp to explain the seasonal shift at Andreas Canyon 16 kilometres away.</label>
        <note type="quotation-withheld">Quotation withheld because this record is not cleared for redistribution.</note>
      </span>
      <span xml:id="t38" type="content_tags" ana="#content_tags.definitions[0]" resp="#tagger">
        <label>selective disadvantage</label>
        <term>selective disadvantage</term>
        <note type="quotation-withheld">Quotation withheld because this record is not cleared for redistribution.</note>
      </span>
      <span xml:id="t39" type="content_tags" ana="#content_tags.definitions[1]" resp="#tagger">
        <label>ten-day period</label>
        <term>ten-day period</term>
        <note type="quotation-withheld">Quotation withheld because this record is not cleared for redistribution.</note>
      </span>
      <span xml:id="t40" type="content_tags" ana="#content_tags.variables[0]" resp="#tagger">
        <label>temperature factor</label>
        <term>temperature factor</term>
        <note type="quotation-withheld">Quotation withheld because this record is not cleared for redistribution.</note>
      </span>
      <span xml:id="t41" type="content_tags" ana="#content_tags.variables[1]" resp="#tagger">
        <label>food regime</label>
        <term>food regime</term>
        <note type="quotation-withheld">Quotation withheld because this record is not cleared for redistribution.</note>
      </span>
      <span xml:id="t42" type="content_tags" ana="#content_tags.variables[2]" resp="#tagger">
        <label>gene arrangement</label>
        <term>gene arrangement</term>
        <note type="quotation-withheld">Quotation withheld because this record is not cleared for redistribution.</note>
      </span>
      <span xml:id="t43" type="content_tags" ana="#content_tags.variables[3]" resp="#tagger">
        <label>frequencies of chromosomes</label>
        <term>frequencies of chromosomes</term>
        <note type="quotation-withheld">Quotation withheld because this record is not cleared for redistribution.</note>
      </span>
      <span xml:id="t44" type="content_tags" ana="#content_tags.variables[4]" resp="#tagger">
        <label>gene content</label>
        <term>gene content</term>
        <note type="quotation-withheld">Quotation withheld because this record is not cleared for redistribution.</note>
      </span>
      <span xml:id="t45" type="content_tags" ana="#content_tags.quantities[0]" resp="#tagger">
        <label>s=.3o, t=.7o, q=.7o — Fitted selective disadvantage of ST/ST (0.30) and of CH/CH (0.70) relative to the heterozygote, and the resulting equilibrium frequency of Standard (0.70)</label>
        <note type="quotation-withheld">Quotation withheld because this record is not cleared for redistribution.</note>
      </span>
      <span xml:id="t46" type="content_tags" ana="#content_tags.quantities[1]" resp="#tagger">
        <label>53 percent Standard, 34  percent Arrowhead and 13 percent Chiricahua — Equilibrium frequencies computed for the three-chromosome experiments at 25°C</label>
        <note type="quotation-withheld">Quotation withheld because this record is not cleared for redistribution.</note>
      </span>
      <span xml:id="t47" type="content_tags" ana="#content_tags.quantities[2]" resp="#tagger">
        <label>124 ... 157 ... II3 ... average of 131 — Estimates of the effective number of breeding parents in a cage derived from the excess variance of frequency change, from Standard, Arrowhead and Chiricahua data respectively</label>
        <note type="quotation-withheld">Quotation withheld because this record is not cleared for redistribution.</note>
      </span>
      <span xml:id="t48" type="content_tags" ana="#content_tags.quantities[3]" resp="#tagger">
        <label>300 chromosomes — Number of third chromosomes scored per monthly sample from each cage, split into six subsamples</label>
        <note type="quotation-withheld">Quotation withheld because this record is not cleared for redistribution.</note>
      </span>
      <span xml:id="t49" type="content_tags" ana="#content_tags.quantities[4]" resp="#tagger">
        <label>3·5 weeks ... 5.2 weeks — Assumed generation interval used to convert observed frequency changes into rates per generation, at 25° and at 16.5° respectively</label>
        <note type="quotation-withheld">Quotation withheld because this record is not cleared for redistribution.</note>
      </span>
      <span xml:id="t50" type="content_tags" ana="#content_tags.quantities[5]" resp="#tagger">
        <label>3ooo-sooo flies per cage — Steady-state size of the experimental cage population at room temperature with one fresh food jar every other day</label>
        <note type="quotation-withheld">Quotation withheld because this record is not cleared for redistribution.</note>
      </span>
      <span xml:id="t51" type="content_tags" ana="#content_tags.quantities[6]" resp="#tagger">
        <label>71 percent to 42 percent — Fall in Chiricahua frequency in the 13th experiment, while Standard doubled</label>
        <note type="quotation-withheld">Quotation withheld because this record is not cleared for redistribution.</note>
      </span>
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      <p><note type="rights">The full text of this article is not redistributable, so it is
      not included here. The evidence sentences are withheld with it; the tag layer and its
      grounding status remain. The article itself is at https://doi.org/10.1093/genetics/31.2.125.</note></p>
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