This corpus defines 1,753 terms more than one way. For 199 there are enough attested uses to say how much of its own usage any one definition accounts for; for 44 of those, no definition accounts for half. 33 more terms are defined several ways over and nothing covers anything at all.
A definition can be tested two ways, and this project publishes both. They are not two grades of the same measurement: they answer different questions, they are measured against different evidence, and they are never put in one column.
Scored
Which definition sorts things in and out correctly?
Compared
Which definition matches how this corpus uses the term?
Least covered first. A low figure is the finding, not a gap: it means no single definition in this corpus accounts for how the corpus itself uses the word. Each definition is shown with the paper that wrote it and the sentence that licensed it.
expected information gain that motivates epistemic exploration
constant2021-representation-wars-active-inference
In Equation 5, expected free energy of a policy at a given time G(π,τ) decomposes into a pragmatic or instrumental term and an epistemic term, also known as extrinsic and intrinsic values. The pragmatic term, or extrinsic value constitutes the goal seeking component of expected free energy (often referred to as expected value or utility in psychology and economics) ( Kauder, 1953 ; Sutton and Bart
pixel-level contribution to a model classification
cirillo2021-bias-big-data-ai-open-science
The field of computer vision has dedicated a substantial effort in obtaining interpretable features and understanding the process of classification. 69 For example, the kernels or intermediate features of a trained neural network may shed light on the learned structure in different layers of the network, giving rise to methods like class activation mapping (CAM). 67 Other methods are gradient base
the priority of ideas visible in linguistic use and transmission
jackson2021-text-thought-language-psychological-science
It can be used to understand how humans view the salience of different ideas and how understanding of these ideas may change over time.
the uncertainty reduction afforded by sampling through action
constant2019-regimes-expectations-social-conformity
From the point of view of active inference, one can distinguish two aspects of attention: namely, salience and precision ( Parr and Friston, 2017 ). In the setting of policy selection, salience refers to the epistemic value or affordance of an action; i.e., the uncertainty reduction afforded by performing an action that may not have immediate pragmatic value, such as flipping a light switch to ill
agenda prominence produced by repetition and newsworthiness
kereselidze2016-pandemic-media-attention-risk-perception
Apart from the content, the magnitude of attention, an issue arouses in influenced by the frequency with which this issue is communicated and repeated in different media sources. A time-series analysis of 36 telephone surveys in the UK revealed that the level of worry of contracting swine-flu (which was quite low (9.6% to 32.9%)) was associated with the volume of media messages during the first su
an attentional spotlight that increases a dimension's decision weight
pennycook2022-nudging-social-media-accuracy
Thus, even if people have a strong preference for not sharing inaccurate content (i.e., β F is as large, or larger than, other β values), how accurate content is may still have little impact on what people decide to share if the context focuses their limited attention on other dimensions . The accuracy-based account of misinformation sharing, then, is the hypothesis that β F is not smaller than th
cultural moderation of the predictive weight of person and situation
smith2019-cultures-persons-individual-variability
This study lacked individual-level measures of S, but where these are also included we may anticipate that a variety of cross-level moderation effects will emerge. So, culture, however operationalized, might interact with P, with S, with P.S, or with any combination of factors to influence individual behavior, B. These cross-level moderations are referred to by Bond and van de Vijver (2011) as “cu
intensified awareness of unusual bodily sensations
milliere2018-psychedelics-meditation-self-consciousness
Although we have specifically focused on disruptions of self-consciousness in this paper, it is important to underline that both meditation and psychedelics can not only inhibit various aspects of self-experience, but may also increase their salience in other cases.
intensified response when visual and auditory trigger cues coincide
schroder2020-misophonia-phenomenology-large-sample
Visual triggers were often reported, e.g., repetitive movements (68%). We found visual triggers were often directly associated with auditory triggers (e.g., grinding teeth) in clinical interviews. When visual triggers were reported, they occurred secondary to auditory triggers and had less impact than the auditory triggers. When visual and auditory stimuli occurred simultaneously (e.g., hearing an
local relevance conferred by a state's first confirmed case
bento2020-information-seeking-local-covid-news
There was no observable trend in the search behavior in the days leading up to the announcements, suggesting the first “local” case indeed heightened the collective attention to the pandemic.
making a healthy option conspicuous through position, visibility, or signage
bucher2020-nudges-real-life-food-purchasing
So far, numerous nudging studies have been performed describing a wide range of interventions, for example placing healthier foods at convenient and visible locations in supermarkets (e.g., position nudge) or making healthy foods salient through the use of signage (e.g., information nudge). To establish more conceptual clarity regarding nudging interventions and to facilitate evidence synthesis, t
making vaccination top of mind
milkman2021-behavioural-nudges-covid-vaccinations
In both RCTs, we randomized whether participants received text-message-based reminders or not. All reminders shared two elements that were intended to address two barriers to action. First, all reminders made vaccination top of mind to curb forgetfulness and prompt people to adopt the target behaviour 8, 22 . Second, all reminders sought to reduce inconvenience as a potential source of friction 22
not defined in this paper's own words; model-weighted image region highlighted to a clinician
fritts2022-doctors-ai-human-responsibility-artificial-risks
To tackle the problems of understanding what happens inside the black box of an ML system, a new subfield of AI, called XAI (eXplainable Artificial Intelligence, Gunning et al., 2019 ), has recently emerged. The basic idea is to enhance an existing ML system so that its output is accompanied by an “explanation” of the results. Such explanation is for the humans using the ML system, and it is meant
novelty or disposition-relative prominence that captures selective attention
danaher2020-internet-cognitive-enhancement
Human attention is selective. In rich informational environments, attention will be drawn by the salient features of that environment, either as a function of the intrinsic qualities of that feature (for example, novelty), or as a function of the subject’s dispositions and attitudes (Taylor and Fiske 1978 , 253). As such, Vosoughi, Roy, and Aral hypothesize that misinformation is the salient infor
perceptual prominence created jointly by rhyme position and verse layout
fechino2020-jakobson-levi-strauss-neurocognitive-poetics
The eye movement patterns observed in the present study are also in line with the assumed role of top-down expectation effects [40] [52] . According to these authors, expectations as a consequence of the initial decision about a reading strategy influence the allocation of attention to different elements of the text. Moreover, depending on the visual presentation, features of the text are more or
prolonged fixation used to index perceptual importance within the installation
trondle2018-installation-art-aesthetic-experience
Due to lack of previous study and specific hypotheses, we were primarily interested in assessing general areas of attention (by placing attention on eye fixations), and considering whether viewers appreciated the installed elements as stand-alone artworks or as components that interact with the ambient environment. This latter approach was hypothesized to be an important aspect of installation art
prominence of non-basic appreciation emotions across existing aesthetic measures
menninghaus2017-measuring-aesthetic-emotions
Some emotions that typically are not considered in lists of general or basic emotions are highly salient in Table 1 . Several measures include emotions like being moved or being touched, fascination, captivation, awe, feelings of transcendence, wonder, and admiration. In the emotion literature, emotions like these (and also inspiration) have been characterized as appreciation [ 8 , 110 , 111 ], ot
social relevance that gives words interpersonal meaning
dove2022-social-semantics-abstract-concepts
Socialness gives words salience and gives meaning to the interactions and events that make up sources like Pride and Prejudice , and that occur in the personal and interpersonal complexities of our everyday lives.
societal-scale visibility among the most popular cultural items
lorenz-spreen2019-accelerating-collective-attention
Generally, we analyze groups of the most popular items, because we aim to observe topics that reach societal-scale awareness and avoid small and heterogeneous subgroups.
structural coreness that makes words frequent, early, concrete, and easily retrieved
stella2018-multiplex-mental-lexicon-learning
Next, we explore the impact of the presence of the LVC on cognitive aspects of language such as word processing. Our aim is to explore if words belonging to the empirical LVC (LVC-in) are processed differently than those words not in the LVC (LVC-out), more from a language use perspective rather than a developmental one (which was analysed with the previous null models). Hence, we turn to large-sc
the political or experiential prominence that changes perceived vaccine risk
baumgaertner2018-ideology-trust-vaccination
For example, there is a growing parental and public interest in natural products and even some have taken up the mantel to “green our vaccines” due to public fears of the relationship between MMR vaccine and autism (a relationship for which no credible empirical evidence has been found [ 11 ]). When vaccinations concern children, as in the case of MMR, parents lack control over the outcome of vacc
visibility of the mapping between body movement and spatial information
desutter2017-embodied-spatial-thinking-stem
High-fidelity actions present the dual benefit of permitting the learner to perform an action that would otherwise be simulated mentally and increasing the salience of the relationship between the embodied action and the spatial entities represented.
Bayesian judgment learned from experience
hausman2015-evidence-libertarian-paternalism
There are two research paradigms for studying Bayesian inference, the probability learning paradigm and the text problem paradigm.
context-sensitive statistical explanation of individual behavior
smith2019-cultures-persons-individual-variability
Context is thus defined as the normative structure for the group in which the individual is embedded and is acting in conjunction with other members of that group. Using these norms rather than the individual’s personal norms can yield better prediction of certain outcomes ( Wan et al., 2007b ). Using a person–context interaction to model behavior, we can deploy constructs and their associated mea
exogenous variation in friends' expression estimated from their rainfall
coviello2014-emotional-contagion-social-networks
Notice that we can use equation (2) to estimate the social contagion effect γ that appears in equation (1) . However, y gt and Y gt are still endogenous, so prior to estimation we use an instrument X gt , the aggregated rainfall of the friends of the people in subpopulation g , to predict exogenous variation in the friends' emotional expression Y gt : (3)
Bayesian categorization generated from a participant group's estimated prior
jacoby2024-cross-cultural-rhythm-priors-music-representation
To test whether the rhythm ‘categories’ (modes) in the measured priors could predict perceptual categorization, we simulated categorization judgements with a Bayesian model based on a Gaussian mixture model fit to the estimated priors from each group (in which each mixture component corresponds to a rhythm category). We then compared the results to previously published categorization judgements by
a democratic capacity eroded by epistemic distraction
danaher2020-internet-cognitive-enhancement
Persuasive design creates different types of distractions. The first ones are functional, meaning we are directed away “from information and actions relevant to our immediate tasks and goals” (Williams 2018 , 50). This is the most common type of distraction and it happens, for example, when we interrupt our work flow in order to check email or other notifications. The second type of distractions a
a model-dependent group-reference estimate rather than an objectively measurable individual property
chen2020-predictably-unequal-algorithmic-clinical-prediction
Machine learning and statistical algorithms make predictions on individuals using mathematical models that are not explicitly programmed, but rather are developed using statistical rules that associate variables (or features) with outcomes (or labels) within a training data set. Machine learning is thus a form of “reference class forecasting” 9 whereby an individual’s risk of a given outcome is es
a sub-personal probabilistic density distribution across time
fabry2019-mind-wandering-reader-predictive-enculturation
Both “prediction” and “inference” refer to sub-personal probabilistic density distributions across time, rather than to cognitive processes ascribed to readers as a whole.
a testable expectation that an integrated course will change literacy and myth belief
ruiz2018-educational-psychology-neuroscience-literacy-neuromyths
A second limitation stems from using an educational psychology course that was conventional in content and structure. The disadvantage of using such a course is that it does not fully exploit the expanded model of educational neuroscience and teacher training shown in Fig 1C . This model proposes that educational psychology is critical for bridging between the lower-level constructs of neuroscienc
a time-lagged statistical relation in which earlier Facebook use estimates later affect while controlling prior affect
kross2013-facebook-wellbeing
We examined the relationship between Facebook use and affect using multilevel analyses to account for the nested data structure. Specifically, we examined whether T 2 affect (i.e., How do you feel right now? ) was predicted by T 1–2 Facebook use (i.e., How much have you used Facebook since the last time we asked? ), controlling for T 1 affect at level-1 of the model (between-day lags were excluded
an error between probabilistic expectation and uncertainty-resolving news
mellers2016-savouring-prediction-error-choice
In this framework, we hypothesize that the level of anticipation can be boosted by the (temporal difference) prediction errors caused by predictive cues that resolve reward uncertainty. Pigeons’ vigorous pecking following those cues is a sign of the boost. That is, the definitive reward cue following a partial target evokes a positive (temporal difference) prediction error – the difference between
an experimentally testable expectation about processing time under verse and prose layouts
fechino2020-jakobson-levi-strauss-neurocognitive-poetics
Visual Presentation processing of verse vs. prose: Inspired by an idea on poetry production proposed by Fabb [7] , we hypothesize that in poetry reception as well verse is translated in the brain into a sort of prose variant to facilitate comprehension of the ‘crazy syntax’ and obscure semantics of poetry. While this ‘translation’ process may take time, given that in ordinary language processing t
an output that should be independent of protected group membership
cirillo2021-bias-big-data-ai-open-science
To increase algorithmic fairness, protected attributes, such as gender or ethnicity, can be included during training in order to ensure that algorithmic predictions are statistically independent from these attributes. 34 Alternatively, loss functions can be defined per protected group, and may be forced to remain below a certain level for all defined groups, so that no single group is systematical
anticipating how another person will feel
norenzayan2012-mentalizing-deficits-belief-personal-god
We measured mentalizing with the short self-report version of the Empathy Quotient [28] (22 items, α = .88, M = 23.06, SD = 7.75), which assesses the ability to identify the mental states of others and to react appropriately to them (sample items: “I often find it difficult to judge if someone is rude or polite” (reverse scored). “I am good at predicting how someone will feel.”). We measured syste
classification of future community polarization from early comments
bessi2016-user-polarization-facebook-youtube
Now we want to characterize how the content attract users,—i.e. how users’ polarization evolves comment after comment. We consider random samples of 400 users who left at least 100 comments, and we compute the mobility of a user across different contents along time. On both Facebook and YouTube, we observe that some users interact with a specific kind of content, whereas others start their comment
commercial anticipation and influence of future user behavior
kozyreva2020-citizens-internet-cognitive-tools
Modern online environments are replete with smart, persuasive choice architectures that are designed primarily to maximize financial return for the platforms, capture and sustain users’ attention, monetize user data, and predict and influence future behavior ( Zuboff, 2019 ). For example, Facebook’s business model relies on exploiting user data to the benefit of advertisers; the goal is to maximiz
culturally learned expectation about upcoming musical events
mencke2019-atonal-music-uncertainty-pleasure
Research from cross-cultural studies suggest that familiarity and enculturation with a particular musical style shapes expectancy processes ( Curtis and Bharucha, 2009 ; for a review on cross-cultural music perception and cognition see: Stevens, 2012 ).
feedback that increases sensitivity to an expected external input
oizumi2014-iit-phenomenology-mechanisms-consciousness
The excitatory and inhibitory feed-back connections in the segment/dot system serve a predictive function: they temporarily increase/decrease the sensitivity to similar/opposed stimuli, allowing weaker inputs (with a value of 1) to be detected as segments and dots if the weaker external input is in accordance with the feed-back from within the complex.
inference about future action consequences under a policy
constant2021-representation-wars-active-inference
(ii) Action planning problem: All the brain can work with are the sensory inputs it receives. If we are to engage adaptive action, we must not only infer the causes of our sensations (i.e., forming a sufficiently veridical perception – or conception – of the world in which we currently find ourselves), but we must also predict the consequences of engaging in this or that action in the future. In t
information processing that supports indirect paths beyond immediate local improvement
levin2022-technological-approach-mind-everywhere
The degree of intelligence, or sophistication, of an agent in any space is roughly proportional to its ability to deploy memory and prediction (information processing) in order to avoid local maxima. Intelligence involves being able to temporarily move away from a simple vector toward one’s goals in a way that results in bigger improvements down the line; the agent’s internal complexity has to fac
pattern-based judgment over situations represented in training data
de-cremer2023-ai-tools-organizational-ethics
Even so, at first glance, these systems at least appear to be intelligent, in certain important ways. ML models can spot patterns in large and highly-dimensioned datasets that no human could reasonably parse, and base their predictions on complex patterns that would have been otherwise invisible to humans (cf. Burrell, 2016 ; Joque, 2022 ). Indeed, if humans were asked to parse comparably large am
probabilistic decision support requiring contextual and moral interpretation
lysaght2019-ai-assisted-decision-making-healthcare
Artificial intelligence (AI) is playing an increasingly important role in healthcare. AI software platforms are currently being developed or implemented for use in many targeted healthcare applications, including (but not limited to) medical diagnostics, patient monitoring, and learning healthcare systems. This domain focuses on AI algorithms and software being developed to support clinical decisi
the preregistered expectation that non-conscious framing would lower acceptance
petrescu2016-public-acceptability-nudging-obesity
Contrary to prediction, we found no evidence that highlighting the non-conscious processes by which nudge interventions may work decreases their acceptability.
top-down modulation of multisensory processing
milliere2018-psychedelics-meditation-self-consciousness
Given that a number of intracranial EEG and MEG studies have suggested that beta oscillations encode top-down modulations of predictions (Bauer et al., 2014 ; Michalareas et al., 2016 ; Sedley et al., 2016 ), it is intriguing to speculate that decreased beta power in the TPJ may relate to weakened top-down constraint on multisensory processing underlying self-location.
uncertain early projection of pandemic course before sufficient facts exist
kereselidze2016-pandemic-media-attention-risk-perception
The observed divergence of media attention and disease epidemiology poses a challenge for countries in such an epidemic situation. Firstly, it is very unlikely, that sufficient information about a new virus or an unusual strain of a virus, its potential spread and the disease’s severity is known early in a pandemic. At this stage generally only likely projections can be made about the course of th
not defined in this paper's own words; an individual's authority over mental states and interventions
ienca2021-on-neurorights
As we have seen earlier, cognitive liberty was a precursor to the neuro-rights debate. Albeit there are differences in its formulation, there is a general consensus in the literature that cognitive liberty entails a person’s autonomous, unhindered control over their mind. This is well-captured by Bublitz’s (2013) use of cognitive liberty as a synonym for “mental self-determination.” According to B
learned motor action over a responsive visualization
desutter2017-embodied-spatial-thinking-stem
The face-tracking technology at the center of this embodied interface was embedded into the design so that learners could progress from having a notional idea of the spatial operation of changing perspective to having direct experience of moving between multiple structural diagrams.
not defined in this paper's own words; authorship and governance of action
bertolini2022-robots-ai-legal-subjects
In this sense, one’s action may be a candidate for moral evaluation, only if she i) could exercise control over her actions and dispositions, and ii) was aware of what she was bringing about. These are generally referred to as the control and the epistemic conditions ( Eshleman, 2016 ).
not defined in this paper's own words; comparison condition without lottery incentive
vlaev2019-financial-incentives-health-behavior
Patel et al. [ 46 ] tested the effect of different types of lottery-based financial incentives in increasing physical activity among University of Pennsylvania Employees with body mass index ≥27. All participants used smartphones to track their steps per day and received daily feedback on performance for 26 weeks (financial incentive for 13 weeks and then were follow up for 13 weeks without incent
context-sensitive selection and retrieval of social meaning
dove2022-social-semantics-abstract-concepts
This might be reflected in differential engagement of regions associated with controlled semantic selection and retrieval, such as the left inferior frontal gyrus (IFG; see [ 118 – 120 ] for related discussions).
preservation of a real museum encounter while testing equipment and order effects
trondle2018-installation-art-aesthetic-experience
Installation art also of course raises empirical issues relating to setting. Unlike many other art examples, installations require a site-specific viewing. This is in contrast to most empirical assessments which typically move the viewer to a laboratory and a computer screen for purposes of control and experimental focus ( Cela-Conde et al., 2011 ; Pelowski et al., 2017a ). However, this itself mi
the intervention level ranging from physical rewiring through reward to rational persuasion
levin2022-technological-approach-mind-everywhere
The axis of persuadability. A proposed way to visualize a continuum of agency, which frames the problem in a way that is testable and drives empirical progress, is via an “axis of persuadability”: to what level of control (ranging from brute force micromanagement to persuasion by rational argument) is any given system amenable, given the sophistication of its cognitive apparatus? Here are shown on
governance mechanisms protecting patients and groups while preserving public benefit
lysaght2019-ai-assisted-decision-making-healthcare
Our analysis suggests it is important that developers and implementers of AI-assisted CDSS put in place control mechanisms to protect individuals and groups from harms arising through the tools. At the same time, these controls must not be so restrictive as to prevent the public benefits they can also deliver for health systems. For the purposes of this domain, ‘developers’ are the organisations a
behavioral regulation through self-regulatory processes
cane2012-theoretical-domains-behaviour-change
The study findings pointed to some changes in the framework, which had good face validity. First, there was a separation and clarification of a number of existing domains. The separation of ‘Motivation and Goals’ into two domains of ‘Intentions’ and ‘Goals’ was indicated by both the closed and open sort task results and was particularly apparent in the labels provided by the participants, with lab
competition over a finite shared informational resource
lorenz-spreen2019-accelerating-collective-attention
The model is based on Lotka–Volterra dynamics for species (topics) competing for a common resource (attention) 25 , 26 .
cross-site procedural standardization and explicit tests of alternative explanations
jacoby2024-cross-cultural-rhythm-priors-music-representation
Testing stations were created by local research team members according to a set of specifications (see the OSF repository) or created according to the same specifications by N.J. and sent to teams in different locations. A written procedure describing the process of hardware preparation, software installation, task instruction and participant training was delivered to each group (see the OSF repos
experimental equalization of reward probability while cue informativeness changes
mellers2016-savouring-prediction-error-choice
Subjects experienced blocks of trials with fixed delays (2.5 s, 7.5 s, 20 s and 40 s), where the blocks were indicated by target colors. We set the chance of reward to p B =0.5, consistent with the macaque experiments ( Bromberg-Martin and Hikosaka, 2009 ; 2011 ). Subjects were not told the exact reward probabilities, merely that rewards would be ‘random’.
experimental isolation of metacognition from prior knowledge, performance, and motivation
rollwage2018-metacognitive-failure-radical-beliefs
Our use of a simple perceptual decision task enables us to rule out effects of previous knowledge, task performance, and motivational factors underpinning differences in metacognition.
fixed effects and announcement-timing adjustments that isolate an event response
bento2020-information-seeking-local-covid-news
where Announcement i , k is an indicator variable set to 1 if the first case of state i was announced k days ago. The reference category was 1 d prior to the first case announcement, and we created single indicators Announcement i , 31 , for any k ≥ 30 , and Announcement i , − 41 , for any k ≤ − 40 . We controlled for state fixed effects to allow for time-invariant differences in search patterns b
individuals retaining authority and anonymity over locally trained data
cirillo2021-bias-big-data-ai-open-science
One example of such a framework is the federated learning systems, which enable the training of AI algorithms at a local level, allowing individuals to maintain control and anonymity of their data. 56
steering behavior while preserving the availability of alternatives
bucher2020-nudges-real-life-food-purchasing
Nudging has been proposed as a promising environmental intervention strategy for modifying food choices. The term ‘nudge’ was originally coined by Thaler and Sunstein in 2008 and defined as: ‘ Any aspect of the choice architecture that alters people’s behaviour in a predictable way, without forbidding any options or significantly changing their economic incentives’ (p.6 ) [ 8 ]. Nudging became pop
A third block’s (many-standards control block) stimuli consisted of 10 equiprobable drifting gratings of different motion directions (same structure and stimuli as the initial tuning curve session); stimuli presented in this third condition served as controls that do not elicit adaptation effects of the standard condition or surprise effects like the deviant condition.
Zhou2020-stimulus-specific-regulation-of-visual-oddba
Control, which includes ability to trust the staff, their abilities, and competence, as well as to feel like that the staff are in control and supportive and that they are looking after the patient
larsson2023-feeling-safe-perioperatively
a known word embedded to detect unreliable norming responses
lynott2019-lancaster-sensorimotor-norms
In addition, five controls words were randomly interspersed throughout the item list in order to provide a means to evaluate participant performance as part of our data quality checks (see the Data Quality and Exclusions section). We selected control words using the same criteria as for calibrator words. For perceptual strength norming, the control words were grass , honey , laughing , noisy , and
a standardized review protocol for deciding which claims and studies count as neuromyth evidence
ruiz-martin2021-persistence-neuromyths-education
Future research is needed to define rigorous guidelines to identify a new neuromyth or debunk another.
a user's capacity to configure proximate digital environments
kozyreva2020-citizens-internet-cognitive-tools
The design of choice architectures that make online environments open to adversarial manipulation of user behavior can also be used by people to foster self-control and motivation. Online environments permit—although rarely encourage—a relatively high level of control over one’s choice architecture, such as setting one’s own defaults, adjusting notifications, installing ad blockers, and organizing
an agent-environment loop stabilized by learned social regularities
constant2021-representation-wars-active-inference
Deontic action is explained in terms of the circular causality between outsourcing decision-making to trusted others in the form of deontic cues (material or agential) – indicating the locally adaptive action – and learning the underlying cue-policy mappings. The “closed” control loop, then, comprises the enculturated agent and regularities in her (social) environment. In effect, deontic cues are
an experimental baseline role assigned to reading
fabry2019-mind-wandering-reader-predictive-enculturation
In line with this more dynamical perspective on mind-wandering, we suggest that reading, a cultural practice that comes in a variety of modes, should not be used unproblematically as a control task in experiments on mind-wandering.
an unprompted comparison condition in which accuracy is not made salient
pennycook2022-nudging-social-media-accuracy
These competing accounts can be disambiguated using experiments that prime the concept of accuracy. The results of a series of such experiments support the inattention account. For example, if participants are asked to rate the accuracy of a single politically neutral news headline at the outset of a survey experiment (an “Evaluation” accuracy prompt treatment, sometimes introduced to participants
author-retained authority over reuse under open copyright licences
munafò2016-open-science-researchers-succeed
Through open licensing, researchers thus retain control over how their work is read, shared, and used by others.
authority over one's body and care rather than merely selecting an offered option
yuill2020-womens-decision-making-informed-choice-birth
Control, and how it is linked to choice, is a topic widely covered in reproductive and maternal health research. Women frequently discuss their maternity experiences in terms of control, whether it be losing it, maintaining it or reclaiming it. We chose to shift the perspective to bodily autonomy and integrity because ‘control’ is not always explicitly stated by participants, and experiences often
both imposed mobility restriction and perceived capacity to manage one's life
su2020-covid-lockdown-weibo-twitter-psycholinguistic
Study findings have implications for decision-makers, public health authorities, and practitioners. First, considering the efforts of adjusting to the changing environment in both Wuhan and Lombardy after the lockdown, decision-makers should ensure the supply chain functions as usual to ensure people’s confidence in having the control of their lives. Besides, public health authorities and practiti
collectively regained influence over diet and health choices
metzl2014-structural-competency-stigma-inequality
Medical sociology contributes important analyses of the relationships between notions of structure and agency as they pertain to illness and health. Complicating structural vulnerability’s contention that structure constrains agency, sociologists study ways in which persons navigate resource-poor environments by making volitional choices that impact morbidities and mortalities. Bourdieu’s (1977) n
control involves primary and secondary forms of control dealing with selection and compensation of factors and resources used to facilitate resilience and positive youth development
lee2012-resilience-youth-development
design restrictions that separate recruitment-platform effects from respondent quality and demographics
bosch2019-online-panels-social-science-research
For each measure of data quality that follows, we compared the responses from MTurk participants who passed the initial screener, Prime Panels participants who passed the screener, and Prime Panels participants who failed the screener. Although we originally planned to analyze the data from all MTurk participants, we realized after collecting the data that retaining only those who passed the scree
explicit protected-group encoding or stratification used to repair subgroup validity
chen2020-predictably-unequal-algorithmic-clinical-prediction
With the exception of label bias, which can be difficult to diagnose with the data because the outcome itself has a different meaning across groups (and thus recognition of label bias requires external knowledge about how the data are ascertained), the above subgroup validity issues can generally be diagnosed by examining model performance separately in each of the groups (Fig. 3a ). When a model
fixed effects, exclusion restrictions, placebos, and topic adjustments used for causal identification
coviello2014-emotional-contagion-social-networks
To evaluate the robustness of our method for estimating emotional contagion, we created a “placebo” test of the effect of future weather and resulting emotional expression on today's emotional expression by friends. In Text S1 , we show that none of our four models generates a significant estimate for contagion that travels backwards in time. In future work, it may be helpful to have greater resol
institutional steering without coercion or education
hausman2015-evidence-libertarian-paternalism
A nudge is introduced to change people’s behavior in the desired direction, without incentives, coercion, or education.
methodological isolation of an educational intervention rather than regulation of neural activity
ruiz2018-educational-psychology-neuroscience-literacy-neuromyths
We propose addressing this problem by recursing: by bridging between cognitive psychology and education via the intermediate discipline of educational psychology; see Fig 1C . Educational psychology shares with education a focus on the efficacy of different instructional interventions and a commitment to implementing studies in realistic classroom settings. It shares with cognitive psychology a fo
not defined in this paper's own words; user ability to inspect and modify an open system
danaher2020-internet-cognitive-enhancement
The companions we propose could offer not only more effective ways of accessing information, but they could also function as guides that caution users of the dangers encountered, be they security, privacy or attentional threats. A benefit of using AI companions to navigate the Internet would be the potential to protect or even enhance users’ autonomy, which is threatened by the power and informati
null-model preservation or destruction of network structure and labels
stella2018-multiplex-mental-lexicon-learning
In order to further test correlations between network structure and word labels, we also consider a full reshuffling null model (see SI Sect. 4), in which word labels are reshuffled independently on every layer and thus word identification across layers is not preserved. Hence, full reshuffling destroys inter-layer correlations but preserves network topology. Fully reshuffled multiplex networks di
organism-level coordination with an environmental gradient
baggs2020-ecological-psychology-enactivism-action
Bacterial behavior in relation to the chemical environment is an example of perceiving, and mechanisms or processes in this single-cell case may help to elucidate general principles of perception that pertain to all perceiving organisms (Pittenger and Dent, 1988 ). The basic ecological idea is that organisms attune to arrays structured by the environment in order to keep contact with the layout of
policy intrusion ranging from education to taxation
petrescu2016-public-acceptability-nudging-obesity
Overall, acceptability was lowest for the intervention involving a high-level of intrusion, i.e. Taxation, and highest for the intervention presenting a low level of intrusion, i.e. Education.
public-health containment, treatment, mitigation, and vaccination measures
kereselidze2016-pandemic-media-attention-risk-perception
Initially DE, DK, ES and UK applied a containment strategy. Measures were focused on limiting transmission of the virus or delaying the spread in order to gain time to apply effective response measures. This strategy included laboratory confirmation of suspected cases, contact tracing and isolation of cases [ 27 – 30 ]. Further, all included countries recommended antiviral therapy within 48 hours
ritual practice that builds and sustains social hierarchy
jackson2021-text-thought-language-psychological-science
According to the social-control hypothesis, ritual human sacrifice was used as a tool to help build and maintain social inequalities by demonstrating the power of leaders and instilling fear among subjugates.
statistical adjustment separating the proposed pathway from demographic and cultural alternatives
norenzayan2012-mentalizing-deficits-belief-personal-god
Our findings should be interpreted with some caution; although the results held controlling for several key socio-demographic characteristics, further research conducted in other cultural contexts should assess generalizability of findings [33] .
technological manipulation of behavior whose specificity is historically and conceptually disputed
schleim2021-neurorights-history-brain-control
Delgado and Valenstein both did their research in the Cold War period when scenarios like brain control apparently seemed very realistic, to which the former contributed himself with his vision of the psychocivilized society, but which the latter described as unlikely. 9 The idea that human thought and behavior must be controlled to prevent disaster seems to have been particularly prevalent then,
the capacity to regulate nostalgia and thereby alter its adaptive consequences
menninghaus2017-measuring-aesthetic-emotions
Nevertheless, nostalgia is a mixed emotion that can have negative consequences when people do not have sufficient control over their nostalgia or longing [ 130 , 131 ]. In our study, nostalgia items tended to cross-load on the sadness factor (F7_6; but note that these loadings were not significant at p < .05), which underscores this mixed emotional nature rather than a purely relaxing nature of no
the chance of a shareholder's interest prevailing in a firm's business strategy
vitali2011-network-global-corporate-control
Each shareholder has the right to a fraction of the firm revenue (dividend) and to a voice in the decision making process (e.g., voting rights at the shareholder meetings). Thus the larger the ownership share in a firm, the larger is the associated control over it, denoted as . Intuitively, control corresponds to the chances of seeing one's own interest prevailing in the business strategy of the f
the subjectively diminished capacity to cope with a trigger response
schroder2020-misophonia-phenomenology-large-sample
A perceived loss of control was seen in 81% of the subjects and 90% reported severe to extreme powerlessness.
visually and causally attributed command over an autonomous vehicle
frank2019-human-biases-autonomous-vehicle-moral-dilemmas
Study 5 tests another alternative explanation for people’s moral decisions, specifically whether the prevalent decision to sacrifice the passenger is caused by the inference of passenger agency. The concept of agency refers to humans’ capacity to change their immediate environment, shape the course of their lives, and control their actions 33 . In this and other research on the moral dilemmas of a
the ability to “bounce back” and thrive in the face of adversity
yan2022-resilience-stroke-patients
the ability to adapt to difficult situations and obstacles
aryuwat2022-resilience-nursing-students-review
the ability, outcome, or dynamic process of overcoming adversity adaptively
wang2022-suicide-resilience
Windle's definition, as the paper quotes it: “the process of negotiating, managing and adapting to significant sources of stress or trauma”
mckenna2022-resilience-family-caregivers
To further apprise the debate encircling resilience, Windle 29 conducted an extensive review of over 270 resilience‐related studies, generating the following definition: ‘Resilience is the process of negotiating, managing and adapting to significant sources of stress or trauma. Assets and resources within the individual, their life and environment facilitate this capacity for adaptation and “bounc
`the process of adapting well in the face of adversity, trauma, tragedy, threats or even significant sources of stress` - quoted and then set aside as not reflecting the complexity
southwick2014-resilience-definitions-theory-and
The American Psychological Association ( 2014 ) defines resilience as “the process of adapting well in the face of adversity, trauma, tragedy, threats or even significant sources of stress (para. 4).” While this definition is useful, it does not reflect the complex nature of resilience
not defined in this paper's own words; the paper surveys how the studies framed it - trait, process or trajectory - rather than adopting one
hannon2022-perinatal-resilience-concept
A review of the theoretical discussion and operationalisations of resilience in the perinatal and early motherhood literature demonstrates that, overall, resilience was conceptualised in three ways: as a trait, which in some cases was simultaneously considered a protective factor; a process evidenced in mental health or well-being outcomes; and/or a trajectory exemplified by temporal patterns of l
the ability to bounce back from setbacks and adapt to new circumstances
zhang2023-teacher-resilience-framework
resilience can be defined as the process of effectively mobilizing internal and external resources in adapting to or managing significant sources of stress or trauma
lee2012-resilience-youth-development
the American Psychological Association's broad definition, as the paper quotes it: “the process of adapting well in the face of adversity”
lee2012-resilience-youth-development
The American Psychological Association also uses a broad definition: “the process of adapting well in the face of adversity, trauma, tragedy, threats, or even significant sources of stress—such as family and relationship problems, serious health problems, or workplace and financial stressors. It means “bouncing back” from difficult experiences” [ 15 ].
the capacity to endure and overcome challenges
pereira2024-positive-nursing-practice-environment
a continuum that fluctuates across domains and the life course, for modern resilience researchers
mckenna2022-resilience-family-caregivers
In actuality, modern resilience researchers argue that resilience is likely to exist on a continuum that fluctuates across different domains and the life course. 29
the capacity to flexibly respond and adapt when faced with adversity
jeong2025-vicarious-resilience-nurses
THE CATEGORY QUESTION, ORTHOGONAL TO WHOSE DEFINITION YOU TAKE: the paper says a definer must first specify whether the word names A TRAIT, A PROCESS, OR AN OUTCOME. This record already carries four disciplinary definitions (Bonanno, Yehuda, Masten, Panter-Brick); this axis cuts ACROSS all four, because two people can pick the same definition and still disagree about what KIND of thing it names. The paper also names the failure that follows - treating it as present or absent.
southwick2014-resilience-definitions-theory-and
In defining resilience, it is important to specify whether resilience is being viewed as a trait, a process, or an outcome, and it is often tempting to take a binary approach in considering whether resilience is present or absent.
THE LEVEL-OF-ANALYSIS AXIS, AGREED BY THE PANEL RATHER THAN DISPUTED: the term `may be defined differently in the context of individuals, families, organizations, societies, and cultures`. A SECOND ORTHOGONAL AXIS - a trait-reading at the individual level and a process-reading at the societal level are two independent choices, so the four named definitions do not exhaust the space they sit in. Note this one is CONSENSUS, not disagreement: the panel agrees the term is level-relative.
southwick2014-resilience-definitions-theory-and
The panelists agreed that resilience is a complex construct and it may be defined differently in the context of individuals, families, organizations, societies, and cultures.
THREE TYPES IN ONE PARAGRAPH: `individual resilience is both a personality trait and a capacity that can be developed`, and `recent evidence suggests that resilience might be better conceptualized as a developmental process`
trenerry2021-preparing-workplaces-for-digital-t
Although individual resilience is both a personality trait and a capacity that can be developed, recent evidence suggests that resilience might be better conceptualized as a developmental process ( Hartmann et al., 2020 ). This is because resilience may present differently across various work-life domains ( Harms et al., 2017 ) and is influenced by resilience mechanisms (e.g., coping strategies) a
The total score ranges from zero to forty, and a higher score indicates greater resilience to adverse events.
hou2020-gender-differences-of-depression-and-anxiety-among
We believe that resilience is the ability to maintain one’s orientation towards existential purposes despite enduring adversities and stressful events.
sisto2019-towards-a-transversal-definition-of-psychological-resilience
a complex, multifaceted phenomenon, trait, process or a hybrid of the two
mckenna2022-resilience-family-caregivers
This emphasizes the fact that resilience is a complex, multifaceted phenomenon that merits further clarification within the caregiving sphere with respect to whether it is a trait, process or a hybrid of the two.
broadly, the process of, capacity for, or outcome of successful adaptation despite challenge (Masten and colleagues)
lee2012-resilience-youth-development
A broad definition was given by Masten and colleagues [ 8 ] defining resilience as the process of, capacity for, or outcome of successful adaptation despite challenging or threatening circumstances.
caregivers' own conception is broader than the academic one and emphasizes self-compassion
mckenna2022-resilience-family-caregivers
One retained study explored conceptual resilience discrepancies between academic definitions of resilience and caregivers' personal conceptualizations, and found that caregivers extended the concept more broadly and emphasized the role of self‐compassion. 54
denotes caregivers' ability to adapt to the physical and psychological requirements of their role
mckenna2022-resilience-family-caregivers
experiencing significant traumatic events and difficulties and still achieving positive developmental outcomes
shen2024-academic-resilience-nursing-students
for Benson, a shift from identifying an individual's risk factors to identifying their strengths
lee2012-resilience-youth-development
Benson [ 17 ] postulated that the term “resilience” indicates a paradigm shift from the identification of the risk factors of an individual (i.e., a pathological view) to the identification of strengths of an individual.
it is understood as a human potential to be developed during life, considering personal contexts, mechanisms, and abilities learned [ 2 ]
lima2023-resilience-older-people
its dynamic character in advanced age, expressed by more or less adaptive attitudes
lima2023-resilience-older-people
Interestingly, the dynamic character of resilience is expressed by more or less adaptive attitudes facing the complexity of experiences in advanced age [ 9 ].
narrowly, specific development outcomes at specific points in life
lee2012-resilience-youth-development
This finding supports the adoption of a narrow definition of resilience focusing on specific development outcomes at different specific points in life [ 16 ].
not defined in this paper's own words; the contested construct - four author-attributed definitions in this paper, and a colloquial sense running alongside all of them
southwick2014-resilience-definitions-theory-and
We define resilience very simply as a stable trajectory of healthy functioning after a highly adverse event. Our work (e.g., Bonanno, 2004 ; Bonanno, Westphal, & Mancini, 2011 ) has typically focused on acute life events, what we call potentially traumatic events. Over the course of time, often for a number of years, we map out the trajectories of people's responses to those events (e.g., Bonanno,
positioned in statistical models as a modulator of well-being or a binary outcome
mckenna2022-resilience-family-caregivers
Similarly, the lack of a persistent definition of resilience within caregiver health research perpetuates the tendency of scholars to position resilience within statistical models as either a modulator of well‐being or a binary outcome itself that is either present or absent. 27
the ability of a physical and/or sociopolitical system to bounce back to a stable state after a perturbing shock
breslauer2023-stability-political-physical-science
the ability to cope with the challenges, stresses, and adversities in life
sun2022-digital-resilience-school-education, van-haeken2020-perinatal-resilience
the ability to successfully overcome challenges and deal with changes, which offer experience and opportunities for learning and growth
moya2022-social-resilience-definition
the capacity of a socio-ecosystem to absorb disturbance and to maintain particular properties such as function, structure, identity, and feedback
destoumieuxgarzon2018-one-health-concept
the capacity to recover from perturbations
lahti2014-tipping-elements-intestinal-ecosystem
the individual capacity to cope with crises, losses or hardships without negative consequences
al-asfoor2024-health-system-resilience
the long-term capacity of a system to deal with change and continue to develop
kais2016-community-capitals-resilience
public use of affect and negative-emotion word categories
su2020-covid-lockdown-weibo-twitter-psycholinguistic
Holmes and colleagues find that higher levels of the use of emotion words indicate more immersion in the negative event [ 40 ]. In the study, we find that a higher degree of immersion [ 22 ] evidenced by the frequent use of emotion words ( negative emotion and affective process words). Therefore, people in Wuhan might get more emotional and are at a deeper level of immersion in negative emotions a
not defined in this paper's own words; affective experience shaped partly by musical expectations
pearce2018-statistical-learning-probabilistic-prediction-music
It is important to note that expectation is not the only psychological mechanism by which music can induce emotions, 6 , 93 and future research should examine the ways in which expectation‐based induction of emotion interacts with other psychological mechanisms, such as imagery, contagion, and episodic memory, to generate complex aesthetic experiences of music.
not defined in this paper's own words; distributed affective response
conway2013-neuroaesthetics-trouble-beauty
Nonetheless, a discovery that every person's experience of beauty (however vaguely defined) correlates with activity within a specific brain region would be surprising, since it would seem more likely that a complex reaction (beautiful!) would hinge not on the absolute level of activity within a single brain center but rather on the pattern of activity across many distributed brain regions—specifi
not defined in this paper's own words; socially salient affect linked to notifications and recognition
williams2020-struggle-human-attention
Likewise, the information received as sensory input in the form of personalized notification [ 65 ] directly impacts the emotional system of the individual, associated with the second and third network of the Attention System theory [ 23 , 25 ], determining the priority of actions [ 65 ]. The emotional intensity of social media notifications [ 86 ] works because it is linked to psychological chara
a felt aesthetically evaluative response rather than content represented by a stimulus
menninghaus2017-measuring-aesthetic-emotions
While the boundaries of the category aesthetic emotions remain fuzzy, scholars largely agree on the prototype for aesthetic emotions. We have identified some of its features that we consider central. First, we label as aesthetic emotions only emotions that recipients actually feel, rather than emotions that are represented, expressed, or alluded to in the respective stimuli (see, e.g., [ 36 , 37 ]
According to the latter classification, main terms defined as follows: (i) “emotion” is a response of the organism to a particular stimulus (person, situation or event).
dzedzickis2020-human-emotion-recognition-review-of-sensors-and
a culturally variable linguistic category with minimal valence and arousal universals
jackson2021-text-thought-language-psychological-science
The variability in emotion meaning that we observed was associated with the geographic proximity of language families, suggesting that the meaning of emotion may be transmitted through historical patterns of contact (e.g., warfare, trade) and common ancestry. We also found that emotions universally clustered together on the basis of their hedonic valence (whether or not they were pleasant to exper
a felt dimension of situated organism-world experience
popova2020-enactivism-ecological-psychology-agency
It includes perception, imagination, memory, emotion, and many other aspects of conscious life.
a grounding source for abstract meaning
dove2022-social-semantics-abstract-concepts
Much of this work is inspired by multiple representation views and considers multiple sources of grounding beyond the sensorimotor, including the potential contributions of action, language, interoception, emotion, cognition and other internal states.
abstract meaning strongly grounded by interoception
lynott2019-lancaster-sensorimotor-norms
The above work on perceptual strength concentrated on five common modalities of sensory experience: touch, hearing, smell, taste, and vision. More recently, however, Connell, Lynott, and Banks ( 2018 ) showed that interoception (i.e., sensations inside the body) also plays an important role in semantic representations, and could be a primary grounding mechanism for abstract concepts. As compared t
an outcome constituted within relational and cultural contexts
smith2019-cultures-persons-individual-variability
These authors proceed to make their case by examining the research data supporting the importance of variations in relationship type, relational character, and the developmental history of a relationship for their impact on a wide range of psychological outcomes – “prosocial behavior, social influence, person perception, self-concept, self-regulation, and judgments of pain, taste, beauty, and risk
content salience that competes with accuracy for limited decision attention
pennycook2022-nudging-social-media-accuracy
Researchers should explore theoretical issues relating to inattention to accuracy and the efficacy of accuracy prompts. For example, if people are not paying attention to accuracy when making judgments about what to share, what are they paying attention to? It seems likely that the social signaling and feedback mechanisms that are inherent to most social media applications (such as “likes”) reinfo
not defined in this paper's own words; autonomic arousal elicited by culturally learned word forms
stephens2011-swearing-euphemisms-linguistic-relativity
Participants read aloud swear words, euphemisms of the swear words, and neutral stimuli while their autonomic activity was measured by electrodermal activity. The key finding was that autonomic responses to swear words were larger than to euphemisms and neutral stimuli. It is argued that the heightened response to swear words reflects a form of verbal conditioning in which the phonological form of
positive or negative language publicly expressed in social-network posts
coviello2014-emotional-contagion-social-networks
To measure emotional expression, we use “status updates” (also called “posts”) which are undirected text-based messages that a user's social contacts (Facebook friends) may view on their own News Feed.
Compared to the mood which is a conscious state of mind or predominant emotion in a time, the emotion often refers to a mental state that arises spontaneously rather than through conscious effort and is often accompanied by physical and physiological changes that are relevant to the human organs and tissues such as brain, heart, skin, blood flow, muscle, facial expressions, voice, etc.
shu2018-a-review-of-emotion-recognition-using-physiological
a driver of fast deontological moral choice
frank2019-human-biases-autonomous-vehicle-moral-dilemmas
Research on the underlying mechanisms of human moral decision-making in variations of the trolley dilemma shows that two distinct decision-making modes can alter the outcomes of people’s decision processes significantly 16 . Extending on dual-process theory 19 – 22 , Greene et al . find that in a deliberate decision-making mode, people use more cognitive resources and make more utilitarian moral d
a mental state identified and interpreted within the mentalizing capacity
norenzayan2012-mentalizing-deficits-belief-personal-god
Empathy has been used extensively to detect individual differences in adult mentalizing tendencies, including perspective taking, interest in others' beliefs and desires, and understanding emotions.
a plural domain of behavioral influences rather than a single neural response
cane2012-theoretical-domains-behaviour-change
Fifteen of the 19 open sort participants provided labels for the groups they created. The majority of labels were similar to those in the original framework: (number of participants giving that label shown in parenthesis): Knowledge (4), Skills (5), Intentions (7), Goals (6), Emotion (9), Cognitive-related (8), Beliefs (5), Beliefs about Capabilities (7), Outcomes (6), Environment-related (6), Org
a situated, named, and potentially mixed response reported during an immersive art encounter
trondle2018-installation-art-aesthetic-experience
The primary means of assessment involved soliciting participant reports of their felt emotions using a list of terms meant to capture a range of aspects or outcomes. This followed previous work in appraisal theory (e.g., Silvia, 2005a ; Scherer et al., 2006 ) that suggests that specific emotions might be tied to the personal relationship between viewer and art and through mapping their general inc
affective harm or benefit produced by stigmatizing and body-positive content
clark2021-weight-stigma-social-media
While social media may exacerbate experiences of stigma, it may also serve to provide a space to build solidarity, reduce social isolation, and increase awareness of weight bias. The Body Positivity (BoPo) movement is a prominent social movement to reduce weight bias on social media, which, while largely decentralized, has been heralded by some influential personas ( 59 ). BoPo, which has roots in
an art-specific response that can transform negative content into pleasure
mastandrea2019-art-wellbeing-aesthetic-emotion
On the other hand, various theories of emotion have been influential in describing the paradoxical enjoyment of negative emotions in art ( Juslin, 2013 ; Sachs et al., 2015 ; Menninghaus et al., 2017 ).
an embodied evaluative guide to safety, satisfaction, and care choice
yuill2020-womens-decision-making-informed-choice-birth
Different decision-making strategies intersect over the course of pregnancy, how information is collected and scrutinised and how options are weighed within different boundaries. Feelings of satisfaction, anxiety and safety are used as an inner guide for making a decision, demonstrating the extent to which emotional and bodily well-being are considered when choosing significant care options, such
an unpleasant sensory response that can intensify aesthetic value
mencke2019-atonal-music-uncertainty-pleasure
Indeed, it has been argued that negative emotions can even reinforce the intensity of a positive aesthetic experience ( Zelle, 1985 ; Wald-Fuhrmann, 2011 ; Menninghaus et al., 2017 ).
an unstable psychological category mapped many-to-many onto stimulation sites
schleim2021-neurorights-history-brain-control
Notwithstanding the progress in psychology and neuroscience of the last decades, much about the human mind and consciousness remains a riddle. For example, researchers may predict that electrical stimulation in the temporal lobe leads to auditory or visual hallucinations, but not what their precise content will be (Selimbeyoglu and Parvizi, 2010 ). Guillory and Bujarski reviewed the emotional resp
irritation, anger, or disgust elicited by a socially contextualized sensory trigger
schroder2020-misophonia-phenomenology-large-sample
Subjects reported extreme irritation, anger, and disgust as primary emotional responses (see Table 3 ). Aggressive outbursts were seldom reported at psychiatric interviews; verbal aggression was common, but physical aggression was rare. Frequency was not assessed with a questionnaire.
replace the fuzzy concept of ‘affection’ by the more precise term of ‘emotion’ for all its somatic aspects
lopezmunoz2019-alexithymia-concept-history
savouring or dread during the wait for a disclosed outcome
mellers2016-savouring-prediction-error-choice
Thus analysis using our model showed that the values of targets were computed via a competition between savoring and dread ( Figure 4C ). That is, when participants chose 0% info target, they experienced a mixture of the baseline savouring of possible reward and the baseline dread of possible no-reward during the wait period. On the other hand, when they chose the 100% info target, they experience
not defined in this paper's own words; discrimination reproduced from institutional training data
tortora2020-neuroprediction-ai-forensic-psychiatry-criminal-justice
These findings have led to a broader debate about the fairness of risk assessment using A.I. ( Berk et al., 2018 ). Although algorithmic risk assessments can be perceived as a means of overcoming human bias, they could still reflect prejudice and institutionalized bias. A.I. is trained on data – for example, criminal files – that may themselves reflect biases on the part of police officers, prosec
selective reporting by researchers and policy advocates
hausman2015-evidence-libertarian-paternalism
You can call this a bias for people’s biases, or a confirmation bias: presenting studies that appear to demonstrate people’s systematic deviations from rationality but omitting those from researchers who do not find biases or disagree with the yardstick of rationality used in the first place.
not defined in this paper's own words; systematic distortion from linkage error
benchimol2015-record-routinely-collected-health-data
Data describing linkage methods and evaluating their success are critical to permit the reader to assess the impact of any linkage error and related bias [ 51 ]. Specifically, the reader should know whether the type of linkage used was deterministic and/or probabilistic, in order to determine whether linkage could be affected by false matches or missed matches. Deterministic linkage is useful when
not defined in this paper's own words; systematic validation difference
abatzoglou2018-terraclimate-high-resolution-global-dataset
Data from TerraClimate were extracted at grid cells co-located with individual stations. We calculated linear validation statistics of Pearsons’ correlation coefficients, mean absolute error (MAE), and bias for each station. We constrained our validation to calendar year summaries rather than individual months to avoid artificially inflating the correlation by incorporating the seasonal cycle. To
not defined in this paper's own words; technology-specific distortion reduced through method combinations
berg2020-microbiome-definition-re-visited-o
Microbiome research is strongly driven by methodological advances. Despite all progress in this area, there is no perfect and universal method. A toolbox of technologies will reduce bias resulting from each individual technology and result in a more complete view on the biological system as a whole
not defined in this paper's own words; the side preference an inactivation was expected to produce, and did not
Erlich2015-distinct-effects-of-prefrontal-and-parietal
The plotted x-location of the side LED trials are slightly offset for visualization. https://doi.org/10.7554/eLife.05457.021 To summarize, unilateral inactivation of PPC did not reliably bias accumulation trials in three separately tested groups of rats.
preference for information supporting an existing narrative
bakshy2020-selective-exposure-facebook-news-diet
Selective exposure may lead to the emergence of echo chambers [ 19 , 20 ]—i.e. groups of like-minded people cooperating to frame and reinforce a shared narrative—thus facilitating fake news and more generally misinformation cascades [ 21 , 22 ]. This is especially valid when considering the way in which we have shifted from a paradigm where information was supplied by few official news sources med
a mismatch between sample and population distributions
cirillo2021-bias-big-data-ai-open-science
Bias can be defined statistically and socially.
not defined in this paper's own words; systematic error of the fitted time constant, estimated from the surrogates and subtracted
Neophytou2022-differences-in-temporal-processing-speeds-be
Unfortunately, bootstrapping or resampling procedures cannot practically correct for these issues. For example, if there are only a handful of spikes, bootstrap samples may consistently provide very small time constants such that the variance of the estimator is close to zero. However, in this low firing rate regime, the uncertainty of the estimator should be large if we properly accounted for the
discriminatory output and amplification of prior social beliefs
kozyreva2020-citizens-internet-cognitive-tools
Another challenging consequence of algorithmic filtering is algorithmic bias (e.g., Bozdag, 2013 ; Corbett-Davies et al., 2017 ; Fry, 2018 ). Here ethical concerns touch on both the generation of biases in data processing and the societal consequences—such as discrimination—of implementing biased algorithmic decisions ( Mittelstadt et al., 2016 ; Rahwan et al., 2019 ). One particularly disturbing
group-differential model performance arising from design, labels, features, data, or sampling
chen2020-predictably-unequal-algorithmic-clinical-prediction
We use the term algorithmic bias (in distinction to fairness) specifically to refer to these issues related to model design, data and sampling that may disproportionately affect model performance in a certain subgroup.
ideologically selective crediting of information about vaccine risks and benefits
baumgaertner2018-ideology-trust-vaccination
We have additional reasons for expecting support for hypothesis 4, that individuals that are more conservative are less likely to trust government medical experts than less conservative individuals. There is evidence that trust in government medical experts, such as the Centers for Disease Control and Prevention, can be affected by ideological triggering. This can happen by signaling group identit
learned replication of social prejudice that produces group harm
lysaght2019-ai-assisted-decision-making-healthcare
Adhering to considerations of justice by recognising that AI-assisted CDSS may replicate social biases and prejudices that can bring about discriminatory harms and ensuring that the benefits and burdens of these systems are distributed equitably across the population, developers must be aware of any existing biases in the training data sets that have been used. Where there are risks of the AI syst
publication selection avoided by including the entire experimental file drawer
pennycook2022-nudging-social-media-accuracy
How robust is this accuracy prompt effect? In a recent meta-analysis, we analyzed every experiment we ran ( k = 20, N = 26,863) with accuracy prompts in U.S. samples between 2017 and 2020 ( Pennycook and Rand 2021c ). Typical meta-analyses have two major drawbacks that this approach overcomes: publication bias and questionable research practices (and, in particular, p-hacking) ( Carter et al. 2019
selective analytic flexibility and outcome reporting constrained by preregistration
munafò2016-open-science-researchers-succeed
Publicly preregistering one’s experimental design and analysis plan in advance of data collection is an effective means of minimizing bias and enhancing credibility (see section "Open questions").
systematic moral-choice variation caused by perspective and processing mode
frank2019-human-biases-autonomous-vehicle-moral-dilemmas
The present research updates the current knowledge on people’s morality in dilemmas faced by autonomous vehicles. The reported studies demonstrate that people’s moral decisions, regardless of the presented dilemma, are biased by their decision-making mode and personal perspective. Under intuitive moral decisions, participants shift more towards a deontological doctrine by sacrificing the passenger
First, let us define bias as the combination of various design, data, analysis, and presentation factors that tend to produce research findings when they should not be produced.
ioannidis2005-false-findings
a cognitive vulnerability deliberately instrumentalized by information curation and design
danaher2020-internet-cognitive-enhancement
The fact that most information curation services deliver personalized information to each individual user, tailored to suit their pre-existing beliefs and preferences, produces concerns connected to echo chambers. Echo chambers are closed systems of like-minded people that have the effect of amplifying and reinforcing users’ beliefs, while isolating them from opposing views. This happens because i
a context-dependent error rather than a hardwired cognitive defect
hausman2015-evidence-libertarian-paternalism
In the paternalist literature I have not seen discussions of the existing research that concludes that most people have unsystematic, but not systematic biases.
a non-concurrent cohort difference that can mimic an instructional effect
ruiz2018-educational-psychology-neuroscience-literacy-neuromyths
That belief in some neuromyths appears to be declining suggests that, over time, carefully communicated neuroscience findings can supersede incorrect beliefs. Indeed, Macdonald et al. [ 35 ] found that younger people believe neuromyths less strongly than older people. Declining belief in neuromyths may also explain the surprising finding that participants in the experimental group believed more ne
a positive shift caused by labeling negative content as art
mastandrea2019-art-wellbeing-aesthetic-emotion
In other words, there might be a general positive bias in the perception of art ( Gerger et al., 2014 ).
a predictable boundary or habit in decision making that choice architecture can recruit
bucher2020-nudges-real-life-food-purchasing
Nudging has been proposed as a promising environmental intervention strategy for modifying food choices. The term ‘nudge’ was originally coined by Thaler and Sunstein in 2008 and defined as: ‘ Any aspect of the choice architecture that alters people’s behaviour in a predictable way, without forbidding any options or significantly changing their economic incentives’ (p.6 ) [ 8 ]. Nudging became pop
a sociocognitive disposition shaping educators' sincere judgments about contested brain claims
ruiz-martin2021-persistence-neuromyths-education
This work has revealed the urgency of finding new ways to survey teachers about their perceptions, their cognitive bias, and their sincere beliefs.
a statistically significant evaluative association for which group-wide teaching inferiority lacks credible support
fan2019-gender-cultural-bias-student-evaluations
Throughout this paper, and in the title, we have used the term “bias” when describing the statistically significant effect females and non-English speaking teachers. It should be pointed out that one of the limitations of this study is that it is only able to show association, e.g., being female is associated with a lower SET score, we cannot say what really was the cause for a lower score. Howeve
a systematic displacement of reproduced category centres from exact integer ratios
jacoby2024-cross-cultural-rhythm-priors-music-representation
We also found that some of the rhythm categories were systematically biased away from the closest small-integer ratio. Of the 22 analysed small-integer ratios, 9 had corresponding modes (estimated with a Gaussian mixture model) that were slightly but significantly biased away from the integer ratio (Fig. 4b ). These biases were present cross-culturally and were similar to those previously observed
an evaluatively loaded label for a subconsciously driven choice process
petrescu2016-public-acceptability-nudging-obesity
We did not use the same wording as Felsen et al., in order to avoid the negative connotations of the terms “subconscious” and “ bias ”.
an overall confidence-reporting tendency separable from insight into whether a choice is correct
rollwage2018-metacognitive-failure-radical-beliefs
In particular, one-shot measures of the discrepancy between performance and confidence are unable to disentangle the contributions of confidence bias (changes in an overall belief about performance, which may be affected by optimism [ 8 ] and mood [ 9 ]) from changes in metacognitive sensitivity (an ability to distinguish accurate from inaccurate performance; [ 7 ]).
contamination of demand by contributors' own page requests
wu2015-production-information-attention-economy
Another caveat is that not all requests are generated as a result of demand for information. A number of requests to related articles are likely to be generated by the very creators of new entries; one could hardly create new knowledge about some topic without consulting existing pages about it. This is a source of potential bias for our measure of demand especially in the case of low-traffic topi
distortion of an experimental inference by platform-specific demographic composition
bosch2019-online-panels-social-science-research
As our study illustrated, although demographic representativeness is not important for many studies (Coppock, Leeper, & Mullinix, 2018 ), it matters when samples differ in the characteristics necessary to produce a specific phenomenon. In the with God on Our Side experiment, we observed that thinking about God’s attitudes toward abortion caused Prime Panels participants to become more opposed to a
explicitly NOT chance variability, which produces false findings even under a perfect design
ioannidis2005-false-findings
Bias should not be confused with chance variability that causes some findings to be false by chance even though the study design, data, analysis, and presentation are perfect.
historically embedded discrimination reproduced and amplified through organizational AI
de-cremer2023-ai-tools-organizational-ethics
(a) Scale : Because AI systems are typically trained on large and highly-dimensioned datasets, they have the potential to reflect discriminatory patterns and biases that would have otherwise remained invisible to human eyes (cf. Burrell, 2016 ; O'Neil, 2016 ). And, because AI systems are increasingly being deployed in far-reaching and consequential decision-making contexts, the risks of their deci
inherited gender and racial patterning in language and labels
jackson2021-text-thought-language-psychological-science
NLP techniques also carry the same gender and racial biases as the language- and human-generated labels they are trained upon ( Garg et al., 2018 ; Kiritchenko & Mohammad, 2018 ).
ordinary mind-reading distortions carried into inferences about a deity
norenzayan2012-mentalizing-deficits-belief-personal-god
When adults form inferences about God's mind, they show the same mentalizing biases that are typically found when reasoning about other peoples' minds [16] – [18] .
prejudicial technology output creating discrimination and threatening mental integrity
ienca2021-on-neurorights
Finally, some authors have proposed the recognition of rights that are not directly related to the protection of the mental domain but rather to the promotion of some socio-technical requirements that are instrumentally necessary for the realization of the rights above. Two of these normative ethical corollaries have been proposed: the right to fair access to mental augmentation and the right to p
racial inequality embedded in institutions rather than only in individual belief
metzl2014-structural-competency-stigma-inequality
In 1968, the civil-rights activist Stokely Carmichael famously assailed forms of racial bias embedded, not in actions or beliefs of individuals, but in the functions of social structures and institutions. “I don’t deal with the individual,” he said. “I think it’s a cop out when people talk about the individual.” Instead, speaking to a group of mental-health practitioners, Carmichael protested the
selection and diagnostic confirmation risk in a single specialist clinic
schroder2020-misophonia-phenomenology-large-sample
This is the first large sample study of misophonia subjects in which we not only explored the dynamics of misophonia symptoms, but also examined the impact of symptoms on quality of life. However, this research also has its limitations. First, the Amsterdam UMC is the only center in the Netherlands with a specific treatment for misophonia, which could lead to a selection bias. Furthermore, since n
selective consumption of information adhering to prior beliefs
bessi2016-user-polarization-facebook-youtube
The diffusion of social media caused a shift of paradigm in the creation and consumption of information. We passed from a mediated (e.g., by journalists) to a more disintermediated selection process. Such a disintermediation elicits the tendencies of the users to a) select information adhering to their system of beliefs—i.e., confirmation bias—and b) to form groups of like minded people where they
systematic distortion of a statistic through non-random sampling or an estimator whose expectation differs from the parameter
vicente2020-bias-human-machine-interaction
In statistics, bias refers to the systematic distortion of a statistic. Here we can distinguish a biased sample, which means a sample that is incorrectly assumed to be a random sample of a population, and estimator bias, which results from an estimator whose expectation differs from the true value of the parameter [ 81 ]. Within our scope, bias is closer to the sample bias and estimator bias from
systematic platform and language differences that threaten a cultural comparison
su2020-covid-lockdown-weibo-twitter-psycholinguistic
There are several limitations. First, our samples were from selected active social media users only. The results have a limitation in generalizing to the whole population. Second, language differences exist between Chinese and Italian. While processing Italian text, some inevitable errors may occur because of the apostrophe. Third, we do not have access to the users’ IP, and location authenticatio
the ecological fallacy of transferring group-level relations to individuals
smith2019-cultures-persons-individual-variability
Thus, nation-level scores can better be considered as an indicator of an underlying structure that will have been molded over time by multiple factors, and which may entail institutional structures, such as family relations, schooling, work organizations, laws, and languages spoken. They do not necessarily require value consensus. The strongest argument for retaining an interest in nation-level di
weight-based labeling, stereotyping, exclusion, and discrimination
clark2021-weight-stigma-social-media
Weight stigma, also commonly referred to as “weight bias,” “weight discrimination,” or “weight prejudice” ( 3 ), refers to the labeling, stereotyping, separation, and discrimination of individuals, populations, and organizations on the basis of weight ( 2 ).
a human individual, dynamic characteristic
de-brito-sena2021-spirituality-healthcare-definition
Spirituality is a broad and complex concept which varies its understanding according to different cultural, religious and academic backgrounds
(…) a way of being in the world in which a person feels a sense of connectedness to self, others, and/or a higher power or nature; a sense of meaning in life; and transcendence beyond self, everyday living, and suffering.
tavares2022-spiritual-comfort-support-care
Spirituality is a complex construct that is related to all dimensions of being
alshakhshir2024-spiritual-competence-nursing
Spirituality is a distinctive facet of human experience, varying for each individual
monteiro2025-spiritual-awakening-concept
is inherently personal, subjective, and multifaceted
coelho2025-spiritual-care-competence-palliative
not defined in this paper's own words; the spiritual dimension of a person, attended to as part of care
martins2024-spiritual-distress-hopelessness
In addition, the inclusion of spirituality in clinical practice enhances the quality of life for patients in palliative care [ 37 ].
spirituality refers broadly to personal beliefs, values, and existential meaning-making
teixeira-pinto2026-spiritual-intelligence-concept
artificial intelligence
dang2023-human-centred-ai-mobile-health, zhang2022-metaverse-in-education-definition
Auger-Impact Ionization
yang2017-phonon-upconversion-lead-halide-perovskites
`a highly contested concept`, defined here by contrast (not natural intelligence) and by function (mimicry of tasks that would otherwise need human intelligence), and split into NARROW and GENERAL
ryan2020-in-ai-we-trust-ethics-artificial-i
The definition of AI is a highly contested concept. It often refers to technologies that demonstrate levels of independent intelligence from humans. By its very definition, it is an intelligence that is differentiated from natural intelligence; it is a constructed, artificial, or machine intelligence.
a neutral descriptor of the creator versus a pejorative label
humans-versus-ai-whether-and-why-we-prefer-human
Initial forays into the AI-art interaction seem to suggest that, not only is AI art sufficiently sensorily similar to human-created art that people fail to accurately discern its true creator (human or AI), but also that people tend to derogate AI-created art as compared to human-created art (Chamberlain et al., 2018 ; Gangadharbatla, 2022 ; Mazzone & Elgammal, 2019 ). For example, Chamberlain et
aridity index
hu2021-aridity-biodiversity-soil-multifunctionality, tabari2020-climate-flood-extreme-precipitation
not defined in this paper's own words; pattern-learning system shaped by human data and decisions
de-cremer2023-ai-tools-organizational-ethics
In broad terms, ML models are “trained” by letting them analyze large and highly-dimensioned datasets to identify generalizable patterns—typically either in a “supervised” manner (i.e., with human-labeled examples of correct and incorrect inferences that the model learns to extrapolate patterns from), or in an “unsupervised” manner (i.e., where the model is given some sort of reward/cost function
not defined in this paper's own words; developing PTSD or other symptoms and no longer having them
southwick2014-resilience-definitions-theory-and
began to make a distinction in the non-PTSD group between resistance (e.g., survivors who did not develop psychopathology) and recovery (e.g., survivors who did develop PTSD, or other symptoms, but who no longer had those symptoms). This got me thinking that resistance depicted as never developing symptoms to adversity is not the same thing at all as having symptoms and bouncing back.
a general concept referring to the process of regaining health, well-being, or a lost ability, including the ability to work and perform in society
friedman2021-concept-of-recovery-meanings
a return to pre-disturbance coral cover that need not restore original species composition
bruno2007-regional-decline-coral-cover-indo-pacific
Despite the well-documented effects of several causes of mass coral mortality, there is substantial evidence that coral communities remain resilient, often recovering in ten to thirty years after major disturbances [15] , [47] , [20] , [39] , [59] . However, such “recovery,” loosely defined as a return to pre-disturbance coral cover, often does not mean a return to original coral species compositi
not defined in this paper's own words; the return of cortical sound-evoked activity - which does not restore spike-timing-based hearing
Kumar2023-cell-type-specific-plasticity-of-inhibitory
Robust VIP sound-evoked activity (recovery) after NIHL To test this hypothesis experimentally, we first used in vivo wide-field transcranial imaging of populations of VIPs (Fig.
the outcome that nursing students rebound from adversity, and return to the right track or enter a new balance
shen2024-academic-resilience-nursing-students
information processing between perception and action that supports learning, memory, prediction, generalization, and adaptive action
levin2022-technological-approach-mind-everywhere
For the purposes of this paper, “cognition” refers not only to complex, self-reflexive advanced cognition or metacognition, but is used in the less conservative sense that recognizes many diverse capacities for learning from experience ( Ginsburg and Jablonka, 2021 ), adaptive responsiveness, self-direction, decision-making in light of preferences, problem-solving, active probing of their environm
not defined in this paper's own words; cognitive outcome reviewed across disability conditions
bull2020-world-health-organization-physical-activity-sedentary-behaviour-guidelines
In people with spinal cord injury, low-certainty and moderate-certainty evidence suggests physical activity reduces shoulder pain and improves vascular function in paralysed limbs. Insufficient evidence was available to determine the relationship between physical activity and comorbid conditions in individuals with intellectual disability or multiple sclerosis. There is high-certainty evidence sho
not defined in this paper's own words; reasoning, planning, or access functions distinguished from raw experience
wahbeh2022-what-if-consciousness-is-not-an-emergent-pro
Bernardo Kastrup proposes “analytic idealism” as a model for reality, in which the ground of existence is universal phenomenal consciousness ( Kastrup, 2021 ). Analytic idealism is a metaphysics that postulates consciousness as Nature’s sole fundamental ground and that all natural phenomena are ultimately reducible to universal consciousness. He describes phenomenal consciousness as a raw subjecti
organizing and managing information through perception, attention, representation, memory, reasoning, and action
danaher2020-internet-cognitive-enhancement
Cognition is hereby understood as the process of organizing and managing information and it includes acquiring (perception), selecting (attention), representing (understanding) and retaining (memory) information and using it to guide behavior (reasoning and coordination of motor outputs) (Bostrom and Sandberg 2009 , 312). Cognitive enhancement thus is the increase or augmentation of the cognitive
skillful know-how exercised in situated embodied action
popova2020-enactivism-ecological-psychology-agency
In current enactivist thinking cognition is thus defined as “the exercise of skillful know-how in situated and embodied action” ( Thompson, 2007 , p. 13).
the knowledge and beliefs shared by the public regarding nursing and its associated information
duan2024-public-image-of-nursing
not defined in this paper's own words; entity defined by etiology, course, features, and treatment response
kohler2020-the-human-phenotype-ontology-in-2021
The community uses the word phenotype with multiple meanings. The HPO defines a disease as an entity that has all four of the following attributes: an etiology (whether identified or as yet unknown) a time course a set of phenotypic features if treatments exist, there is a characteristic response to them A phenotype phenotypic feature is a part of a disease. The phenotype of an individual with a d
not defined in this paper's own words; one consequence variants may help explain
bateman2020-uniprot-the-universal-protein-know
Data Integration UniProtKB integrates large-scale datasets, mapping these data onto the appropriate protein sequence records and displaying the mappings via the ProtVista visualisation tool ( 28 ) and downloadable via FTP and APIs ( 29 ). Clinically relevant sources of variation (e.g. 100K genomes, gnomAD and ClinVar SNPs) are mapped to protein features and variants using a pre-calculated mapping
a state of prolonged-dysfunction that prevents ease
saad2020-philosophy-of-health
Rather than define health as the absence of disease (as seen in BST), notice here how we instead define disease in relation to health; and we define health in relation to maintainability , ease , and functioning .
an umbrella term that refers to all pathological conditions, both somatic and mental
amoretti2021-concept-of-disease-normative
if an individual's potentials and related social and environmental determinants are insufficient to respond satisfactorily to life's demands – the state is disease
bircher2014-defining-health-determinants
not defined in this paper; named only to say inflammation should not be viewed as one
hussain2016-oxidative-stress-polyphenols
Inflammation itself cannot be viewed as a disease but should be rather viewed as a biological process.
not defined in this paper's own words
srinivasan2019-reorienting-rabies-research-india
our research indicates that large collections of food waste can result in fighting among dogs with spill-on effects on people
not defined in this paper's own words; avoidable food loss whose reduction can lower demand growth
ray2013-yield-trends-global-crop-production
Clearly, the world faces a looming and growing agricultural crisis. Yields are not improving fast enough to keep up with projected demands in 2050. However, opportunities do exist to increase production through more efficient use of current arable lands [4] and increasing yield growth rates by spreading best management practices and closing yield gaps under different management regimes [38] – [42]
As (1), but including edible material that is intentionally fed to animals or is a by-product of food processing diverted away from the human food (Stuart 2009).
parfitt2010-food-waste-within-food-supply-chai
THE PAPER ENUMERATES THREE COMPETING DEFINITIONS AND SAYS WHICH IT USES, which is rare enough to be the reason this record is worth holding. (1) FAO 1981: wholesome edible material intended for human consumption, discarded, lost, degraded or eaten by pests anywhere in the chain. (2) Stuart 2009: as (1) PLUS edible material fed to animals or diverted as a processing by-product. (3) Smil 2004: as (1) and (2) PLUS OVER-NUTRITION - the gap between energy consumed and energy needed. The paper adopts the first two and states that the second is only usable where nutritional data on animal feed exist
parfitt2010-food-waste-within-food-supply-chai
As definitions (1) and (2) but including over-nutrition—the gap between the energy value of _consumed_ food _per capita_ and the energy value of food _needed per capita_ (Smil 2004 _a_).
Wholesome edible material intended for human consumption, arising at any point in the FSC that is instead discarded, lost, degraded or consumed by pests (FAO 1981).
parfitt2010-food-waste-within-food-supply-chai
a lack of social contacts and interactions with family members, friends or the community
wang2025-social-frailty-isolation-dementia
an objective condition arising from quantitatively diminished social networks
mansfield2021-loneliness-conceptual-review
in the cancer context, two attributes: behaviors and states of social avoidance, and negative affective experiences
liang2022-social-isolation-cancer-concept
In this analysis, the attributes of social isolation were classified into two categories, namely, behaviors and states of social avoidance and negative affective experiences.
not defined in this paper's own words; loneliness and lost contact that families and staff saw after the move
egan2021-transitioning-long-term-care-id
Social isolation as a negative consequence of relocating to a long-term care setting was identified by family members and support staff
refers to individuals demonstrating behaviors and states of social avoidance (e.g., avoiding contact with others and concealing one’s emotions) and experiencing specific negative affective experiences (e.g., feelings of loneliness)
liang2022-social-isolation-cancer-concept
not defined in this paper's own words; year predictor from 1968 to 2004
bruno2007-regional-decline-coral-cover-indo-pacific
Linear repeated measures regression analysis was used to test the null hypothesis that there was no relationship between coral cover and time from 1968 to 2004. We were unable to perform a formal meta-analysis because several critical components (e.g., variance estimates, sample size, repeated sampling of each reef, etc.) were not available for all data sets. We used Stata (version 9.1, STATA Corp
Tissue, Infection, Moisture, Epithelial: the main factors that hinder healing
tottoli2020-skin-wound-healing
In the practice of wound care, the acronym Tissue (T), Infection (I), Moisture (M) and Epithelial (E) (“TIME”) synthesizes all main factors that interfere negatively in the healing process.
a quantity common to two distant places, which the paper says cannot be defined at all except by stipulation about light travel
einstein1905-electrodynamics
We have not defined a common “time” for A and B, for the latter cannot be defined at all unless we establish by definition that the “time” required by light to travel from A to B equals the “time” it requires to travel from B to A.
technological-proxy sense: accumulated knowledge and technical development at fixed income and schooling
mathers2006-projections-global-mortality-burden-disease
Rather than attempt to model the effects of the many separate direct determinants or risk factors for disease from the limited data that are available, the GBD methodology considered a limited number of socioeconomic variables: (1) average income per capita, measured as gross domestic product (GDP) per capita; (2) the average number of years of schooling in adults, referred to as “human capital”;
the reading of one clock, defined only for the place that clock occupies
einstein1905-electrodynamics
And in fact such a definition is satisfactory when we are concerned with defining a time exclusively for the place where the watch is located; but it is no longer satisfactory when we have to connect in time series of events occurring at different places
not defined in this paper's own words; internal symbol or distributed embodied relation
allen2016-cognitivism-autopoiesis-embodied-mind
Here we have sketched the enactive and embodied underpinnings of the FEP. Much work remains to be done on this issue. For example, although we here argue that the FEP resolves the tension between internalist and externalist approaches, we recognize that some may remain dissatisfied. We look forward to discourse concerning, for example, the notion of the brain-body-econiche as a kind of generative
not defined in this paper's own words; internal model rejected by the ecological account
heft2018-history-philosophy-ecological-psychology
Despite its influence, ecological psychology offers some of the most powerful arguments against behaviorism. J. J. Gibson rejected the behaviorist idea of stimulus for two reasons: first, because it was measured as a physical unit (light, pressure, waves of sound) unrelated to the agent’s capacities; second, because it was passively received by the senses, whereas ecological psychology emphasized
grounded sensorimotor structure of word meaning
lynott2019-lancaster-sensorimotor-norms
In conclusion, the Lancaster Sensorimotor Norms provide a valuable resource for researchers across a variety of fields. Use of these norms as semantic variables, whether as an aggregate measure of sensorimotor strength or as modality- and effector-specific ratings, will inform psycholinguistic models of word recognition and language processing (e.g., Connell & Lynott, 2016a ; Estes, Verges, & Adel
not defined in this paper's own words; code into which the autoencoder encodes its input
voulodimos2018-deep-learning-for-computer-vision
An autoencoder is trained to encode the input **x** into a representation **r**( **x**) in a way that input can be reconstructed from **r**( **x**) \ [33\]. The target output of the autoencoder is thus the autoencoder input itself. Hence, the output vectors have the same dimensionality as the input vector. In the course of this process, the reconstruction error is being minimized, and the correspo
not defined in this paper's own words; internal copy or materially enacted correspondence
malafouris2018-mind-material-engagement
Setting the boundaries of the human mind was never easy. Specifying the conditions under which a process falls on the ‘inside’ or on the ‘outside’ of those boundaries even more so. As I said, the conventional way of dealing with this problem, marking the mental and delineating those boundaries, has been to divide the world a priori in two parts, a mental part and a physical part. The mental part i
not defined in this paper's own words; coverage of all biogeographic provinces and realms
selig2014-global-priorities-marine-biodiversity-conservation
There are many other factors besides biodiversity and impact that should be assessed to meet CBD or other management targets. We specifically focused on the identifying priority areas that amounted to approximately 5% of EEZ area as stepping stones to a broader 10% goal ( Fig. S3 ). We do not suggest that areas highlighted here should be used exclusively to fulfill a 10% CBD target. For example, w
not defined in this paper's own words; language-shaped categorical organization
thierry2016-neurolinguistic-relativity-language-cognition
In sum, neurophysiology and cognitive neuroscience suggest that language and thought are intrinsically bound together, and thus that language likely influences thought. An example of the mechanism through which this can occur is the label‐feedback hypothesis put forward by Lupyan ( 2012 ). Lupyan proposed that a category name becomes associated with distinctive features of the category it denotes
an explicit multiplex network model of relations among words
stella2018-multiplex-mental-lexicon-learning
Our multilayer lexical representation (MLR) of words in the mind is a multiplex network 28 , 30 , 47 , 48 made of N = 8531 words and four layers. Each layer encodes a distinct type of word-word interaction (cf. Fig. 1(a) ): (i) empirical free associations 49 , (ii) synonyms 50 , (iii) taxonomic relations 50 , and (iv) phonological similarities 12 . As shown in Fig. 1(b) , different relationships c
not defined in this paper's own words; mediating symbolic structure rejected by radical embodiment
popova2020-enactivism-ecological-psychology-agency
Both theories are currently described as positions of “radical embodiment” ( Baggs and Chemero, 2018 ) in that they both reject a representational view of human cognitive processes and see being and acting in the world as a foundational capability of the mind.
heterogeneous methods and materials through which educator beliefs are measured across studies
ruiz-martin2021-persistence-neuromyths-education
Unfortunately, it was not possible to investigate the source of this diversity of results due to the heterogeneity of the methodologies and materials represented in the articles analyzed.
a discipline-specific external tool for spatial reasoning
desutter2017-embodied-spatial-thinking-stem
While these examples both draw on the same concept of space (“extent of an object”), the notion of spatial thinking provided by the National Research Council ( 2006 ) highlights that the contexts of use and forms of representation used by an engineer and a mathematician as well as the rationale propelling their lines of work differ in important ways. Because the spatial thinking construct brings a
as something another researcher can read and understand, which the paper argues needs no formalisation at all
lod2023-art-history
It is more important to present it in a way that is accessible and understandable to other researchers, which does not require this high level of formalization, because it would end up in overcomplicated queries.
a listener's psychological organization of tonal structure
mencke2019-atonal-music-uncertainty-pleasure
Decades of psychological research have shown that a tonal musical context has a strong psychological representation, whereas musical events that do not occur in a tonal context are less stably represented ( Krumhansl, 1979 ).
a nation-level indicator of an unobservable cultural structure
smith2019-cultures-persons-individual-variability
“Societal culture is a latent hypothetical construct. It cannot be observed directly, but can be inferred from its manifestations. The rich complex of meanings, beliefs, practices, symbols, norms and values prevalent among people in a society are among the manifestations of the underlying culture. They are not culture itself.” (p. 6).
a process with aboutness and satisfaction conditions
constant2021-representation-wars-active-inference
Although these are different types of representations, each involving different criteria, a cognitive process will – for the purposes of this paper – be deemed representational whenever that process can be said to fulfill the following sufficient conditions (see Siegel, 2010 ; Hutto and Myin, 2013 ): (i) The cognitive process is about something else (a.k.a. aboutness). (ii) The cognitive process h
an agent's revisable internal model of external action space and its own body
levin2022-technological-approach-mind-everywhere
Agents (and their sub- and super-agents) construct internal models of their spaces ( Beer, 2014 , 2015 ; Beer and Williams, 2015 ; Hoffman et al., 2015 ; Fields et al., 2017 ; Hoffman, 2017 ; Prentner, 2019 ; Dietrich et al., 2020 ; Prakash et al., 2020 ), which may or may not match the view of their action space developed by their conspecifics, parasites, and scientists.
an experimenter-defined mapping from neural pattern to communicative symbol
schleim2021-neurorights-history-brain-control
This conceptual point and the “mental ontology” researchers are using when probing their subjects’ brains becomes relevant when translating brain signals into psychological terms, as can be illustrated with the following two examples: A few years ago, researchers built a brain-computer interface enabling, in their words, “conscious brain-to-brain communication in humans using non-invasive technolo
an internal intermediary rejected by ecological psychology
baggs2020-ecological-psychology-enactivism-action
For ecological psychologists mutuality of organism and environment is the key to explain perception, action and cognition without recourse to representations. Mutuality ensures a deep ontological and epistemological compatibility between the organism and the environment which makes meaning inherent in the dynamic process unfolding in this relationship. Mutuality works at the level of the organism,
an observer-relative description of external feature detection
oizumi2014-iit-phenomenology-mechanisms-consciousness
From the perspective of an external observer (e.g. a neuroscientist recording the activity of “neurons” ), the function of a mechanism is typically described with respect to external inputs (e.g. a “segment” detector).
demographic correspondence between a recruited sample and its target population
bosch2019-online-panels-social-science-research
We compared the demographic characteristics of the Prime Panels and MTurk samples to that of the American National Electoral Study (ANES), which uses a high-quality probability sample of the US population. We also examined whether studies that have difficulty replicating on MTurk because of their dependence on underrepresented demographic characteristics would replicate successfully on Prime Panel
demographic matching between a survey sample and the national adult population
baumgaertner2018-ideology-trust-vaccination
In order to test our hypotheses, we rely on data from a nationally representative online survey, collected from January 25–27, 2017. Our sample was provided by Survey Sampling International (SSI), a U.S.-based market research firm. After we obtained IRB exemption from our institution [Project Number: 17–007; exemption granted under category 2 at 45 CFR 46.101(b)(2)], SSI sent the link to our surve
encoded training examples that delimit what a model can recognize and generalize
de-cremer2023-ai-tools-organizational-ethics
Even so, at first glance, these systems at least appear to be intelligent, in certain important ways. ML models can spot patterns in large and highly-dimensioned datasets that no human could reasonably parse, and base their predictions on complex patterns that would have been otherwise invisible to humans (cf. Burrell, 2016 ; Joque, 2022 ). Indeed, if humans were asked to parse comparably large am
numerical format that changes the ability to reason
hausman2015-evidence-libertarian-paternalism
Instead, studies show that children, adults, and experts can learn statistical thinking with the help of adequate numerical or visual representations.
the graphic form in which an unchanged literary text is presented to a reader
fechino2020-jakobson-levi-strauss-neurocognitive-poetics
Especially for printed poetry, the visual presentation is important and meaningful: the visuo-spatial (graphic) configuration of the text is not randomly defined as in space poetry for example (e.g., Apollinaire’s Calligrammes ), and authors typically decide which visual presentation best suits their aims [8] . However, as expressed in the initial quote by Fabb [7] lineation itself does not make a
a clinical symptom standing for downstream effects of upstream decisions
metzl2014-structural-competency-stigma-inequality
We define structural competency as the trained ability to discern how a host of issues defined clinically as symptoms, attitudes, or diseases (e.g., depression, hypertension, obesity, smoking, medication “non-compliance,” trauma, psychosis) also represent the downstream implications of a number of upstream decisions about such matters as health care and food delivery systems, zoning laws, urban an
a content option encoded by accuracy and non-accuracy characteristics in a utility model
pennycook2022-nudging-social-media-accuracy
Consider a piece of content x , which is defined by k different characteristic dimensions; one of these dimensions is whether the content is false/misleading F ( x ), and the other k -1 dimensions are non–accuracy related (e.g., partisan alignment, humorousness, etc.) defined as C 2 ( x ) . . . C k ( x ). In our model, the utility a given person expects to derive from sharing content x is given by
a contested stand-for relation rather than a generic neural pattern
malafouris2021-mark-making-human-becoming
In contrast to this representational description of our cognitive and semiotic universe, the material engagement approach I advocate in this paper holds that the study of material signs do not have to rely on this representational or symbolic idiom. For one thing, what neuroscientists refer to when they speak of neural ‘representations’ have little to do with the meaning of this term in archaeolog
a culturally learned probability distribution over discrete rhythm categories
jacoby2024-cross-cultural-rhythm-priors-music-representation
We conducted a large-scale cross-cultural study of music perception. Our aim was to assess whether discrete mental representations of musical rhythm are present across cultures and whether the associated mental categories are fixed or dependent on some aspect of life experience. We ran the same iterated reproduction experiment on 39 different groups around the world. We found that all groups impos
a multimodal combination of linguistic, emotional, introspective, and sensorimotor knowledge
dove2022-social-semantics-abstract-concepts
Between these poles lie multimodal or multiple representation theories, which posit that semantic knowledge is represented in many ways (e.g. via language, emotion, introspection and sensorimotor systems), and some versions of those theories include an intermediary supramodal hub (e.g. [ 11 , 12 ]).
a platform-visible science or conspiracy narrative category
bessi2016-user-polarization-facebook-youtube
The Facebook dataset is composed of 413 US public pages divided to Conspiracy and Science news. The first category (Conspiracy) includes pages diffusing alternative information sources and myth narratives—pages which disseminate controversial information, usually lacking supporting evidence and most often contradictory of the official news. The second category (Science) includes scientific institu
a selectively sensorimotor mental simulation
desutter2017-embodied-spatial-thinking-stem
Embodiment in this sense is a fundamentally brain-based phenomenon, where, “[the] function of the sensorimotor resources is to run a simulation of some aspect of the physical world, as a means of representing information or drawing inferences” (Wilson, 2002 , p. 633).
a symbolic linguistic tool bodily manipulated in a social practice
fabry2019-mind-wandering-reader-predictive-enculturation
Research on reading comprehension has articulated the need to attend to the specifics of the text, on the one hand, and to the skills and capacities of the reader on the other hand (see McNamara and Magliano, 2009 ), rather than rely on the representation of situation models alone, as it underlies much of the mind-wandering research drawing on reading. We propose enculturated predictive processing
a thing standing for another or the relation between them
malafouris2021-mark-making-human-becoming
Generally speaking, representation can be understood in a double sense: We could think of representation as a thing (in the broadest sense of the term) which stands for another but also as the relation between a thing and that which stands for. We may distinguish between two major types of representations, namely, ‘internal’ and ‘external’. ‘External’ representations are those material signs or si
a viewer's descriptive or experience-based account of what an artwork means
trondle2018-installation-art-aesthetic-experience
The above emotions were also combined with a list of artwork appraisals and also with an assessment of meaning using the open-ended question, “What did the artwork mean?” This has been shown to be effective in augmenting emotional and evaluative scales (see Pelowski et al., 2012 ; Pelowski, 2015 ). Specifically, answers can be divided into three general types that can further be used to demarcate
algorithmically filtered visibility of bodies and weight norms
clark2021-weight-stigma-social-media
Structural weight stigma describes weight discrimination and negative beliefs encoded into societal systems such as medical institutions and consumed media.
an accumulated model of reality skewed by asymmetric evidence updating
rollwage2018-metacognitive-failure-radical-beliefs
Our computational model fits indicate that more radical participants assign undue probability to chosen options when updating their confidence, which over repeated exposure to multiple samples of evidence may summate, such that even small asymmetries in information processing could lead to a highly skewed representation of reality.
an additive mathematical model of a person's socially embedded expression
coviello2014-emotional-contagion-social-networks
More formally, suppose we can represent one person's emotional expression mathematically as follows: (1) This model assumes that emotional expression y jt by person j at time t is an additive linear function of other factors measured in the same time period including a time-specific factor θ t (perhaps it is a holiday), an individual-specific factor f j (some people are always happier than others)
as machine-readable structure, whose point is that a formal query can be run over it
lod2023-art-history
In terms of representing the research process it is not worth making this part machine -readable as a basis for formal queries.
census-weighted estimation of national public opinion
petrescu2016-public-acceptability-nudging-obesity
As our samples were not nationally representative (see Results for details), we weighted the data using UK and USA census data to generate percentage estimates allowing us to draw conclusions that reflect nationally representative samples.
depicted action and emotion conveyed by a cultural artifact
mastandrea2019-art-wellbeing-aesthetic-emotion
This suggests that dynamic artworks may engage motor systems via features that represent actions and emotions ( Freedberg and Gallese, 2007 ).
emotion expressed or alluded to in an artwork but not necessarily felt by its recipient
menninghaus2017-measuring-aesthetic-emotions
It should be noted that the measures listed in Table 1 are not limited to measures of subjectively felt emotions. Rather, we also included measures of emotions that are represented or expressed in the respective stimuli or of potential emotional effects that are attributed to the stimuli (e.g., when respondents rate whether a film is moving or music is joyful, without also reporting on whether the
expert semantic grouping of theory constructs into labeled domains
cane2012-theoretical-domains-behaviour-change
Invitations were emailed to potentially eligible participants giving a brief overview of the study and inquiring as to their expertise. If they considered themselves to have expertise in behaviour change theory and reported not knowing about the original framework, they were invited to participate and emailed the relevant web link to the task they were allocated to. Eligible participants were alte
language expressing culturally relevant psychological categories
jackson2021-text-thought-language-psychological-science
Insofar as language represents the psychological categories that are relevant to its speakers, it is a useful tool for psychologists to measure the extent to which a latent psychological construct (the latent meaning attached to clusters of observations; Fried, 2017 ) is shared within a culture over time or across cultures.
limits on population inference from one segment of online information seekers
bento2020-information-seeking-local-covid-news
First, our state-level data from Google Trends database do not allow us to adequately understand intrastate variation of search volumes following the announcements or to generalize conclusions about population search behavior (as Google Trends only captures the search behavior of a particular segment of information seekers).
normalized word-category frequencies standing in for otherwise unobserved psychological status
su2020-covid-lockdown-weibo-twitter-psycholinguistic
The present study uses the Chinese version of LIWC and Italian version of LIWC to extract the psycholinguistic features from social media users’ posts. Examinations of the features allow us to access the changes of psychological status before and after the lockdown in Wuhan and Lombardy.
observable popularity proxies for otherwise latent collective attention
lorenz-spreen2019-accelerating-collective-attention
We measure various proxies for the collective attention given to individual cultural items in different data sources.
perspectival content locating a subject relative to the environment
milliere2018-psychedelics-meditation-self-consciousness
This idea typically combines two claims: first, in virtue of being structured by an egocentric frame of reference 6 , visual experience represents the location of the point of origin of this reference frame relatively to environmental landmarks; secondly, the location of this point of origin is represented as the location of the subject (i.e., where I am located with respect to objects in the visu
reproducing hospital conditions at home to display responsible motherhood
yuill2020-womens-decision-making-informed-choice-birth
She [participant] used biomedical knowledge to support her view that birth can safely be conducted at home when risks have been excluded by prenatal care. For this purpose she and her husband had searched medical databases to find research on home births. To secure her own low-risk status she had extra examinations done during her pregnancy. She organised her home birth to represent conditions in
social-cognitive modeling of human and supernatural mental states
norenzayan2012-mentalizing-deficits-belief-personal-god
Specifically, the social-cognitive capacity to represent and reason about minds-termed mentalizing, theory of mind, or mind perception [6] , [7] -also enables the mental representation of God and other supernatural agents [2] , [7] .
sufficient subgroup presence for model development and generalization
chen2020-predictably-unequal-algorithmic-clinical-prediction
Subgroup validity may also be a concern in the context of sampling bias, where a minority group may be insufficiently represented in model development data (e.g., certain ethnic groups in the Framingham population 25 ) and the model might be tailored to the majority group. When effects found in the majority group generalize well to the minority group, this is not problematic but generalization acr
the proportional presence of gender and cultural groups within a faculty's teaching workforce
fan2019-gender-cultural-bias-student-evaluations
Fig 4 shows the relationship between proportional representation of the female (E = English speaking background /NE = non-English speaking background) and male (NE) teachers against the estimated relative odds or the size of the effect, values on the y-axis below the value 1 shows increasing size of negative effect. The proportions were calculated ignoring those for whom cultural background was mi
the referential meanings of garden landscapes and character imagery transform as viewers engage, unveiling a constructed Eastern beauty
silk-road-heritage-the-artistic-representation
Export paintings, serving as pivotal mediums of cross-cultural exchange, have provided Western countries with significant insight into the exotic cultures of the East. German artist Beuys [ 48 ] posited that such art forms have facilitated the artification and legitimate dissemination of "social dialogue." Set against specific historical backdrops, export paintings stand as tangible evidence of Si
understanding information and constructing a technologically mediated picture of the world
danaher2020-internet-cognitive-enhancement
The issue with digital literacy is that it is often understood as an acquisition of technical skills for operating computers. Most of the time, digital literacy becomes an engineering class and is equated with the promotion “of more efficient uses of the medium – for example, via the development of advanced search skills (or so-called «power searching») that will make it easier to locate relevant
visual instructional material whose left-right segregation rests on a neuromyth
ruiz2018-educational-psychology-neuroscience-literacy-neuromyths
Regardless of their origins, neuromyths are widespread and have proven difficult to dispel. For example, many educators (and members of the public) believe that the left hemisphere is logical, associated with language and analytic thinking, whereas the right hemisphere is intuitive, associated with spatial reasoning and creativity. This neuromyth likely has its origins in misunderstandings of semi
whether vulnerable groups are visible in training datasets
cirillo2021-bias-big-data-ai-open-science
More generally, if AI is used as a diagnostic or therapeutic approach in patients who are invisible in the datasets that AI algorithms are trained with, these may fail to diagnose or treat entire patient groups, such as ethnic and gender minorities, immigrants, children, the elderly, and people with disabilities.
a psychological and emotional response that occurs when a person, in this case, a nurse, knows the morally right action to take in a situation but is unable to do so due to institutional or hierarchical constraints
miller2023-self-deception-clinical-nursing
negative feelings that arise when one knows the morally correct response to a situation but cannot act because of institutional or hierarchal constraints
timmins2024-moral-distress-student-nurses
not defined in this paper's own words; distress arising when a nurse is constrained from doing what they hold to be ethically right
wu2026-digital-compassion-fatigue-nurses
Moral distress illustrates the point: it may co-occur with digital compassion fatigue when technological constraints prevent nurses from providing the care they judge right, yet its trigger is ethical constraint rather than mediated exposure to suffering, and its core impairment concerns moral rather than compassionate functioning.
The emotional and psychological turmoil that arises when family caregivers experience ethically challenging and complex decision‐making situations that prevent them from acting according to their moral values and beliefs is characterised by self‐directed negative feelings and emotions, internal conflicts, and feelings of powerlessness and helplessness
ananzeh2026-moral-distress-family-caregivers
a conceptual definition of moral distress in the context of family caregiving is described as follows: The emotional and psychological turmoil that arises when family caregivers experience ethically challenging and complex decision‐making situations that prevent them from acting according to their moral values and beliefs
a lingering negative stress reaction
gustavsson2023-moral-stress-conceptual-analysis
phenomenal: subjective feeling or what-it-is-like experience
farisco2018-large-scale-brain-simulation-and-disorders-o
Whether access and phenomenal consciousness are really two different forms of consciousness or rather two different aspects of the same underlying conscious activity continues to be debated ( Pennartz, 2015 ). Still, it is commonly agreed that while access consciousness refers to the interaction between different states, particularly the availability of one state’s content for use in reasoning and
not defined in this paper's own words; possible basis of subjectivity and mental states
bertolini2022-robots-ai-legal-subjects
Trying to identify and condense the philosophical debate on what is a “subject” is a dauntingly difficult task and one which is not our intention to embark on. In essential terms, we may define a subject as an entity that relates with another entity that exists outside itself—the object— through a relationship which the subject enters by means of personal experience and/or consciousness ( Thiel, 2
not defined in this paper's own words; subjective awareness whose source and capacities are under dispute
wahbeh2022-what-if-consciousness-is-not-an-emergent-pro
The nature of consciousness is considered one of science’s most perplexing and persistent mysteries. We all know the subjective experience of consciousness, but where does it arise? What is its purpose? What are its full capacities? The assumption within today’s neuroscience is that all aspects of consciousness arise solely from interactions among neurons in the brain. However, the origin and mech
not defined in this paper's own words; the phenomenon interpreted through 4E, Aristotelian, and neurophysiological perspectives
stanciu2023-consciousness-4e-cognition-and-aristotle-a-f
The new approach in cognitive science largely known as “4E cognition” (embodied/embedded/enactive/extended cognition), which sheds new light on the complex dynamics of human consciousness, seems to revive some of Aristotle's views. For instance, the concept of “nature” ( phusis ) and the discussion on “active intellect” ( nous poiêtikos ) may be particularly relevant in this respect. Out of the va
not defined in this paper's own words; the phenomenon whose physical identity is disputed
cooke2021-what-is-consciousness-integrated-information
Any successful naturalistic account of consciousness must state what consciousness is, in terms that are compatible with the rest of our naturalistic descriptions of the world.
not defined in this paper's own words; the disputed target that cannot be reduced to its neural correlates
farisco2018-large-scale-brain-simulation-and-disorders-o
In the case of consciousness, a first main obstacle to the attempt of simulating it is the lack of a shared definition of the target object. Generally speaking, one can investigate consciousness through simulating NCCs unless some form of dualism is true. Specifically, if operationalised in terms of NCC, it is theoretically plausible to investigate consciousness through simulating NCC.
not defined in this paper's own words; wakefulness together with awareness of self and environment
gervais2023-a-scoping-review-for-building-a-criticality
Though scientists and philosophers have not established a single definition of consciousness, it is generally agreed that conscious beings are aware of themselves, their surroundings, and their own perception. As such, consciousness is thought to require the dual capacity for wakefulness (arousal) and awareness of oneself and the environment ( Blume et al., 2015 ). In healthy individuals, wakefuln
not defined in this paper's own words; the total of internally represented and communicable human experience
ouwersloot2020-reintroducing-consciousness-in-psychopatholo
“Consciousness is the total of a human person’s experience consisting of thinking, feeling, perceiving, remembering, fantasizing, dreaming, etc., that is internally represented and where she can communicate about.
structure: the individual relation to surroundings and to reflection
ouwersloot2020-reintroducing-consciousness-in-psychopatholo
In Sartre’s view, the concept of the structure of consciousness denotes the relation of the individual to his/her surroundings. In the structure of consciousness, he discerns three positions. The first position is where the person behaves without thinking. The individual acts in an immersed or automatic way and Sartre calls this “the non-reflexive consciousness.” It corresponds to the kind of “pre
having an experience for which there is something it is like to be
albantakis2023-integrated-information-theory-4-consciousness
A scientific theory of consciousness should account for experience, which is subjective, in objective terms [ 1 ]. Being conscious—having an experience—is understood to mean that “there is something it is like to be” [ 2 ]: something it is like to see a blue sky, hear the ocean roar, dream of a friend’s face, imagine a melody flow, contemplate a choice, or reflect on the experience one is having.
not defined in this paper's own words; phenomenological experience identified with a maximally irreducible causal structure
oizumi2014-iit-phenomenology-mechanisms-consciousness
E xistence : Consciousness exists – it is an undeniable aspect of reality. Paraphrasing Descartes, “I experience therefore I am”.
IIT: intrinsic irreducible cause-effect structure quantified by phi
wahbeh2022-what-if-consciousness-is-not-an-emergent-pro
Integrated information refers to a system’s constituents that are discriminated by their respective information. The whole cannot be reduced to the information of each part, called the “causal-effect power” ( Oizumi et al., 2014 ). These irreducible maxima of additional integrated information generated by the system as a whole compared to its parts are termed and quantified as Φ (“phi”) and affect
state: a global condition of being conscious rather than not conscious
farisco2018-large-scale-brain-simulation-and-disorders-o
More specifically NCC can be depicted in two basic ways: either as referring to a general, global state of consciousness, i.e., as neural correlates that mark the difference between being and not being conscious; or as referring to particular contents of consciousness, i.e., as neural correlates that are sufficient for a specific object to enter consciousness
system account: a self-organizing extended reference system
forti2025-what-is-consciousness-and-what-it-is-for-an
How does consciousness enable one to know what the world is like? Within the limits of this paper, it is only possible to make a tentative hypothesis. My proposal is that consciousness is a self-organizing extended reference system.
IIT specifically: the Maximally Irreducible Conceptual Structure
cooke2021-what-is-consciousness-integrated-information
In IIT, consciousness is held to be equivalent to a specific aspect of the integrated information associated with a system, the Maximally Irreducible Conceptual Structure (MICS) [ 16 ].
internalist visual model: a process within the brain constructing detailed representations
stanciu2023-consciousness-4e-cognition-and-aristotle-a-f
The study of visual consciousness actually became one of the empirical research domains that substantially enhanced 4E cognition and was in turn supported by it (Gibbs, 2006 offers a list of many other applications of 4E cognition, but, for the sake of clarity and due to the limited space ascribed to this article, I will only concentrate on the example of visual consciousness). Formerly, visual co
not defined in this paper's own words; a system that handles extended information and provides immediate spatial knowledge
forti2025-what-is-consciousness-and-what-it-is-for-an
In this paper, I outline a new theory on consciousness, the Extended Information Theory. This theory jointly addresses issues related to the nature of consciousness and those related to its functional role. The phenomenal analysis of the simplest aspects of experience allows us to identify the structure of consciousness within consciousness itself. The simplest forms of experience are not found in
awareness of the process by which an intervention changes behavior
petrescu2016-public-acceptability-nudging-obesity
In the present study the wording used was “people will not be conscious (i.e. not aware)” of the way in which the intervention would affect their behavior.
analytic idealism: phenomenal awareness distinct from cognition and metacognition
wahbeh2022-what-if-consciousness-is-not-an-emergent-pro
Bernardo Kastrup proposes “analytic idealism” as a model for reality, in which the ground of existence is universal phenomenal consciousness ( Kastrup, 2021 ). Analytic idealism is a metaphysics that postulates consciousness as Nature’s sole fundamental ground and that all natural phenomena are ultimately reducible to universal consciousness. He describes phenomenal consciousness as a raw subjecti
dimensional: a whole varying in degree of disturbance
ouwersloot2020-reintroducing-consciousness-in-psychopatholo
A dimensional line of thought is that in dissociative disorders consciousness can be disturbed more or less severely. According to this theory, consciousness is to be considered a “whole”; and it is a construct that has a dimensional quality.
IIT: integrated information
cooke2021-what-is-consciousness-integrated-information
The description of consciousness that is offered in IIT is that consciousness is integrated information. Information should not be understood here as relating to Shannon information [ 19 ] but is instead the intrinsic cause–effect power of a system, the “differences that make a difference” [ 16 ]. A system that consists of fully independent components has no intrinsic cause–effect power, no differ
not defined in this paper's own words; an ill-understood trait wrongly attributed to algorithms via anthropomorphism
can-computers-create-art
Unfortunately, there has been a considerable amount of media hype around AI techniques. In the news media, algorithms are often anthropomorphized, as if they have the same consciousness as humans (e.g., (Wilson 2017)), and sometimes they are described as artists (Dvorsky 2017; Perez 2018; Pogue 2018). In fact, we do not really know what consciousness is (despite many theories), or what it would me
4E visual skill: activity related to bodily movement and environmental interaction
stanciu2023-consciousness-4e-cognition-and-aristotle-a-f
They joined the trend that ceased to interpret visual consciousness as a brain process that creates mental models and started viewing it more as a skill that is related to the movements of the agent. Visual processing also came to be considered as an activity that is extended and partially controlled by the agent—that means that agents have to “do” something in order to become visually conscious o
Aristotelian mediation: sense experience bridges body and soul, perception and thinking
stanciu2023-consciousness-4e-cognition-and-aristotle-a-f
Another important issue that Aristotle discusses in On the Soul 3.2 (425b22-26) and may be relevant for the 4E cognition proponents' views on (visual) consciousness is that of sense experience ( phantasia ) as a bridge between body and soul, on the one hand, and between perception and thinking, on the other hand. Aristotle asserts that “to perceive” means to form an opinion corresponding exactly t
Living Mirror: inference performed by every living system
cooke2021-what-is-consciousness-integrated-information
The Living Mirror theory holds that consciousness is equivalent to the form of inference performed by all living systems in order to survive [ 12 ]. As a result, all living systems are conscious, even those without nervous systems.
a claimed target of intervention that may instead reflect nonspecific motor interruption
schleim2021-neurorights-history-brain-control
There are many other ways of recording data or intervening in the brain which could not be addressed here, such as psychosurgery, psychopharmacology, or brain imaging and electrical stimulation devices already available for consumers at large. One central aspect, on my account, for the ethical and legal assessment will be whether the psychological meaning of recorded signals can be derived from th
a global state whose self-related dimensions can vary independently
milliere2018-psychedelics-meditation-self-consciousness
Self-consciousness itself may be best construed as a multidimensional construct including somatosensory, agentive, narrative and social components (Gallagher, 2000 , 2013 ; Zahavi, 2014 ; Seth and Friston, 2016 ).
an embodied process rather than a substance
cooke2021-what-is-consciousness-integrated-information
Consciousness is held to be a process that exists in the embodied interaction of the organism with its environment. The representations inside the organism that we might call Bayesian beliefs are an important aspect; however, they are only one part. In this view, consciousness is a process, not a substance.
an inner domain whose voluntary alteration and protection are matters of right
ienca2021-on-neurorights
A pioneering step toward neurorights was marked by Boire’s (2001) and Sententia’s (2004) work on the notion of “cognitive liberty” in the early 2000s. Sententia ( 2004 , p. 227) defined cognitive liberty as “the right and freedom to control one’s own consciousness and electrochemical thought process.” It should be noted that this field of ethical-legal enquiry has emerged in full continuity with t
emerging practical responsiveness to new semiotic possibilities
malafouris2021-mark-making-human-becoming
It is through the engagement with those marks that a whole new semiotic field and practical know how opens up for human creativity. The lines from Blombos provide some of the earliest evidence of that. However, what we witness with the Blombos engravings is not the emergence of a modern representational mind but something way more important and interesting: the beginning of human preoccupation (in
foundational kinesthetic awareness of self-movement
popova2020-enactivism-ecological-psychology-agency
Returning to the early interaction situation, the picture of learning to perceive and act upon social affordances “movement first” is enriched by noting that these are one’s own felt movements that are met with the enactions of caregivers. This feeling of movement becomes enfolded in an enacted project. In social situations we thus learn not only how our body should move in a given point of a soci
function: intentionality, selectivity, and flexibility
ouwersloot2020-reintroducing-consciousness-in-psychopatholo
Sartre’s concept of “function” expresses the individual’s cognitive operations on the environment. Perception, expression, and self-control ( Table 1 ) are cognitive processes that can be subsumed by this concept. “Function” describes what consciousness enables a person to do. These are processes like intentionality, selectivity, and flexibility.
global workspace: globally broadcast information access
wahbeh2022-what-if-consciousness-is-not-an-emergent-pro
Cognitive scientist Bernard J. Baars first proposed the GWT in 1983. GWT is a cognitive architecture inspired by artificial intelligence where a centralized resource is available through which specialized processors share and receive information ( Baars, 2005 ; Baars et al., 2021 ). The theory is based on the observation that there are highly specialized brain regions that process information loca
higher-order theory: representation of lower-order representations
wahbeh2022-what-if-consciousness-is-not-an-emergent-pro
The HOTs family includes, for example, the self-organizing meta-representational account theory (SOMA; Cleeremans et al., 2020 ), the adversarial framework for probabilistic computation ( Gershman, 2019 ), and the perceptual reality monitoring theory ( Lau, 2019 ). In this view, consciousness is defined as a higher-order representation of lower-order representations. In other words, subjective exp
holistic: an indivisible whole or stream
ouwersloot2020-reintroducing-consciousness-in-psychopatholo
Farthing (1992) writes that in spite of the chain of many impressions and multiple experiences, most people feel that their consciousness is one indivisible whole. Both William James, who said that “Consciousness is an integral thing not made of parts” ( James, 1890 ), and Descartes, who said that “I cannot distinguish in myself any parts, but apprehend myself to be clearly one and entire” ( Desca
idealist usage: fundamental ground from which physical reality arises
wahbeh2022-what-if-consciousness-is-not-an-emergent-pro
To begin an exploration of some of these non-physical theories, we present theoretical frameworks proposed by scientists from multiple disciplines, most of which include the idea that consciousness is fundamental, meaning that consciousness precedes the physical substrates ( Chalmers, 1996 ; Currivan, 2017 ; Kastrup, 2017 , 2021 ; Goff, 2019 ; Faggin, 2021a ). Traditional materialists envision a w
inference theories: biologically instantiated inference
cooke2021-what-is-consciousness-integrated-information
Another class of theories holds that consciousness is a form of biologically instantiated inference [ 10 , 11 , 12 , 22 , 23 , 24 , 25 , 26 , 27 , 28 , 29 , 30 , 31 ].
non-local usage: awareness extending beyond conventional brain, body, space, and time
wahbeh2022-what-if-consciousness-is-not-an-emergent-pro
These and other documented phenomenological experiences suggest a different nature of consciousness: one that may not be exclusively generated by neuronal activity and exhibits properties that transcend the conventional constraints of spacetime and, therefore, the physical body. The term “non-local consciousness” has been proposed to denote these purported transcendent properties of consciousness
nonlocalized network phenomenon: healthy and pathological dynamics recruit distributed systems
stanciu2023-consciousness-4e-cognition-and-aristotle-a-f
Another network recruitment that challenges the localization of cognitive functions and strengthens the above argument referring to visual consciousness can be found in the relationship between consciousness and pathology—for instance, epilepsy. The dynamics of conscious states with respect to epileptic activity is an interaction between two functional networks: one physiological—the default mode
phenomenal property: objectual contents extend into their spaces of belonging
forti2025-what-is-consciousness-and-what-it-is-for-an
In this paper I argue that the fundamental property of consciousness is that its objectual contents extend into space. A conscious content, like an object, cannot but extend into the space to which it belongs. But we cannot simply say that a conscious content is extended. If an object that extends has a sufficient level of definition, it cannot help but extend in a certain way. Thus, it can be sta
process assembly: integration and coordination of perception, feeling, thought, memory, and behavior
ouwersloot2020-reintroducing-consciousness-in-psychopatholo
Clinical psychologists taking a descriptive approach conceptualize consciousness as something that can be described as an assembly of psychological processes. Consciousness “does” its work with these processes. For instance, perception, feeling, thinking, remembering, and behavior are analyzed, integrated, coordinated, and manipulated in consciousness.
quality: its clarity, breadth, concentration, or clouding
ouwersloot2020-reintroducing-consciousness-in-psychopatholo
The concept “quality of consciousness” indicates how consciousness is narrowed, broadened, or heightened or is clear, concentrated, or clouded ( Holmes et al., 2005 ).
self-modelling account: temporally and counterfactually deep inference
cooke2021-what-is-consciousness-integrated-information
One such proposal is that consciousness is temporally deep inference with a sufficient amount of counterfactual depth [ 39 , 40 ] to enable the self-modelling of the organism [ 10 ].
simulation view: a transparent brain-generated model of world and self
farisco2018-large-scale-brain-simulation-and-disorders-o
Given the above summarized description of consciousness as a simulation suggested by both neuroscience and philosophy, to simulate the conscious brain means to simulate a simulating system, resulting in a kind of second order simulation (or metasimulation).
state: the current integrated balance of psychic factors
ouwersloot2020-reintroducing-consciousness-in-psychopatholo
Sartre describes consciousness as a psychical phenomenon that can have different states. With the concept “state of consciousness,” he addresses the various specific ways of integration of perception, memory, language, wakefulness, psychomotor ability, and sense of self (or identity). A “state of consciousness” is a “whole” with a characteristic balance, strength, and emphasis in these psychic fac
synonymous with experience and phenomenology
oizumi2014-iit-phenomenology-mechanisms-consciousness
Explaining these facts in a parsimonious manner calls for a theory of consciousness. (Below, consciousness, experience, and phenomenology are taken as being synonymous).
the graded first-person phenomenal experience of a self, including basal sentience
levin2022-technological-approach-mind-everywhere
• Consciousness—the first-person phenomenal experience of any Self—that which makes my toothache irreducibly different to me than anyone else’s toothache or third-person descriptions of toothaches. The degree and content of consciousness is “what it is like” to be that Self, as opposed to studying it from the outside, whether or not the Self is advanced enough to be able to verbalize it or to thin
used variously for awareness, subjective experience, or the mind-body relation across lay, scientific, philosophical, and mystical audiences
wahbeh2022-what-if-consciousness-is-not-an-emergent-pro
From a lay perspective, the fact of consciousness (here meaning awareness ) is so self-evident that the only question that may arise is why anyone would consider consciousness to be mysterious in the first place, akin to asking a fish, “What is water?” From a scientific perspective, the unsolved mystery is how consciousness emerges from brain activity. How does a three-pound lump of tissue inside
true positive/total predicted positive
cunningham2019-automated-posture-estimation-cerebral-palsy
not defined in this paper's own words; confidence assigned to probabilistic mappings and prediction errors
constant2021-representation-wars-active-inference
In active inference, the mapping between causes (e.g., states and policies) and consequences (e.g., sensory outcomes) are parameterized in terms of probabilistic mappings that necessarily have a precision . In other words, the contingencies implicit in likelihood mappings can have different degrees of reliability, ambiguity, or uncertainty. For instance, if my child starts running toward the sea,
not defined in this paper's own words; correctness of included orthogroup assignments
emms2015-orthofinder-whole-genome-comparisons
To determine if this was the case we assessed the performance of OrthoMCL using the OrthoBench dataset [ 5 ]. OrthoBench is the only publicly available benchmark dataset of manually curated orthogroups. The dataset consists of 70 orthogroups of protein coding genes covering 12 species within the Metazoa where each orthogroup contains all the genes derived from a single gene in the last common ance
not defined in this paper's own words; the narrowness of a confidence interval on an appropriate scale
greenland2016-statistical-tests-p-values-confidence-intervals-power
Most of the above misinterpretations translate into an analogous misinterpretation for confidence intervals. For example, another misinterpretation of P > 0.05 is that it means the test hypothesis has only a 5 % chance of being false, which in terms of a confidence interval becomes the common fallacy: 19. The specific 95 % confidence interval presented by a study has a 95 % chance of containing th
not defined in this paper's own words; the quantity that improves where it should degrade
Levi2022-error-correction-and-improved-precision-of-s
We found that signal routing via an intermediary (the DA PYR assembly) did not consistently degrade decoding quality (p = 0.23, U test; Figure 6 B) or precision (p = 0.08, U test; Figure 6 C).
the confidence or inverse variance assigned to a prediction error, which dopamine is proposed to encode
friston2012-dopamine-affordance-active-inference
In this account, dopamine controls the precision or salience of (external or internal) cues that engender action.
the percentage of reads assigned to the correct genus/phylum out of the number of classified reads
menzel2016-kaiju-taxonomic-classification
true positive assignments divided by true plus false positive assignments
emms2015-orthofinder-whole-genome-comparisons
OrthoBench [ 5 ] is the only manually curated dataset of orthogroups for the assessment of orthogroup prediction algorithms. It was used in this work for assessing OrthoFinder as it has been independently evaluated, it underpins the testing of multiple different methods and it is a well-defined and stringent test of the problem that OrthoFinder was designed to solve. Criteria such as functional si
a percentage of correct predictions of completely modified cases over all modified predictions
liu2019-deepmod-nanopore-dna-modifications
confidence governing the weighting and learning of sampled information
constant2019-regimes-expectations-social-conformity
From the point of view of active inference, one can distinguish two aspects of attention: namely, salience and precision ( Parr and Friston, 2017 ). In the setting of policy selection, salience refers to the epistemic value or affordance of an action; i.e., the uncertainty reduction afforded by performing an action that may not have immediate pragmatic value, such as flipping a light switch to ill
the ratio between the true positive links over all the tested positives
leao2022-npomix-machine-learning-mass-spectrometry
We defined “precision” P as the temporal jitter (half-width of the jittering interval, δ) at which Q begins degrading
Levi2022-error-correction-and-improved-precision-of-s
all redundant and ambiguous parts should be eliminated
andersen2022-definition-of-stigma
estimated inverse variance of prediction-error signals and the predictive-process sense of attention
fabry2019-mind-wandering-reader-predictive-enculturation
Whatever perceptual and active inferences contribute to the reduction of prediction errors is modulated by the estimated precision (i.e., the inverse variance) of prediction error signals (Hohwy, 2013 ; Clark, 2015 ; Seth, 2015b ). It has been suggested that precision estimation is equivalent to attention (Feldman and Friston, 2010 ; Hohwy, 2013 ; Clark, 2016 ). Eye movements, generating virtual s
measures the ability of a method to correctly identify the target behaviour
jeantet2020-multi-sensor-loggers-sea-turtle-behaviour
replicability of catch data collection
pauly2016-catch-reconstructions-global-marine-fisheries
the extent to which an OTU contains amplicons from one species without over-grouping
rognese2016-vsearch-metagenomics
We independently evaluated the clustering accuracy of USEARCH and VSEARCH as described for Swarm ( Mahé et al., 2014 ) using two mock datasets, one with an even and one with uneven composition of 57 archaea and bacteria. The datasets were first dereplicated. Then the taxonomy of the unique sequences was assigned by a search against the set of rRNA reference sequences representing the species in th
those functions that prioritize and organize the patterns of variation that can sustain health at a level in future, changing conditions
saad2020-philosophy-of-health
‘a change in behaviour (knowledge, attitudes and/or skills) that can be observed or measured and that occurs because of exposure to environmental stimuli’
makhene2023-decolonisation-nursing-curriculum
not defined in this paper's own words; multiple neural systems and changes situated in broader educational settings
thomas2018-educational-neuroscience-progress-prospects
While ‘learning’ is something that (hopefully) happens in the classroom, the term has multiple realisations in the brain. To illustrate, here is a thumbnail sketch that identifies eight interacting learning systems in the brain: (a) There is a system for memorising specific moments, which produces episodic or autobiographical memory. This is the hippocampus and the structures around it. This syste
not defined in this paper's own words; process through which didactic education affects knowledge
lewis2018-classification-causality-implementation-mechanisms
Proximal outcomes are direct, measurable, and typically observable, products of the implementation strategy that occur because of its specific mechanism of action. That is, affecting a proximal outcome in the intended direction can confirm/disconfirm activation of the putative mechanism, offering a low-inference way to establish evidence for a theorized mechanism. Most often, mechanisms themselves
a change in the underlying syntactic representations
fazekas2020-children-prediction-mistakes-learning
developmental addition of words ordered by age of acquisition
stella2018-multiplex-mental-lexicon-learning
We simulate lexicon growth over time t ( n ) by considering subgraphs of the multiplex lexicon where the first n ≤ 8531 words in a given ranking r are considered. 8531 is the total number of words in our network. Rankings indicate the way words are acquired in the lexicon over time and can be based on word features or age of acquisition reports. The rankings we use are based on: (i) smeared age of
explicit and reportable versus implicit; probed here with one debriefing question, and the conclusion hedged to some cases
Kumar2014-representations-of-specific-acoustic-pattern
Subjective reports from the participants after the experiment showed that most were not aware of any stimulus re-occurring during the experiment, suggesting that in some cases the learning occurred implicitly.
optimization of a generative model's parameters
constant2021-representation-wars-active-inference
Learning here is a technical term.
not defined in this paper's own words; capacity for action within structural constraint
metzl2014-structural-competency-stigma-inequality
Medical sociology contributes important analyses of the relationships between notions of structure and agency as they pertain to illness and health. Complicating structural vulnerability’s contention that structure constrains agency, sociologists study ways in which persons navigate resource-poor environments by making volitional choices that impact morbidities and mortalities. Bourdieu’s (1977) n
autonomous action based on internal states and goals
oizumi2014-iit-phenomenology-mechanisms-consciousness
By contrast, a (strongly) integrated system is autonomous, since it can act and react based on its internal states and goals.
pragmatic capacity for prospective and flexible action
popova2020-enactivism-ecological-psychology-agency
To be sure, agency is one of the key notions for ecological psychology: grounding perception in self-controlled activity in the world has successfully changed the perspective not only in research on perception but in cognition in general. As Edward Reed notices, Eleanor Gibson lists agency as “the core phenomenon for psychology to explain” ( Reed, 1996 , p. 12), linking it to the key issues of aut
not defined in this paper's own words; multiple philosophical and legal capacities
bertolini2022-robots-ai-legal-subjects
Indeed, if we are to define what a robot can and cannot do by referring to the notions of subjectivity or personhood, agency, responsibility or liability, it is first necessary to understand what we mean by these concepts, which have complex and possibly indeterminate meanings.
not defined in this paper's own words; autonomous, asymmetric, normative organism-world engagement
popova2020-enactivism-ecological-psychology-agency
Agency, in the enactive approach, is defined under three main topics: self-individuation (autonomy) , interactional asymmetry , and normativity .
not defined in this paper's own words; world-involving regulation according to self-generated norms
di-paolo2020-pregnant-agencies
Agency adds to autopoiesis and adaptivity the capability of an organism not only to interact but to regulate its interactions with its associated milieu, already specified by the process of self-individuation (see Figure 1 ). As autopoietic, the organism self-maintains, but mere interactions with its environment do not allow it to counteract environmental conditions if needed. In becoming adaptive
not defined in this paper's own words
pisor2020-economic-games-human-behaviour
In summary, these findings show that the relaxation of constraints on behaviour can allow individuals increasing agency with which to act on their private preferences.
not defined in this paper's own words; autonomy and self-endorsement in learning
ng2018-growth-mindset-intrinsic-motivation
First, educators should design a task that has intrinsic value for students to be engaged in doing. For instance, an interesting task will instill curiosity into students, when compared to an uninteresting one. Inculcating the value of doing the task or task value will definitely stimulate the students’ interest. Second, teachers should provide the autonomy or choice for students. Autonomy or the
not defined in this paper's own words; autonomous generation of meaningful action in a coupled world
van-der-schijff2018-4e-music-pedagogy-self-organization
In being embodied, embedded, and extended, cognition is also enactive . This means that the living systems are not simply responders to environments. Rather, they bring forth their own domain of meaning—most fundamentally—through the development of repertoires of actions that are guided by principles related to the organism’s internal coherence (e.g., homeostasis, thermodynamics, regulation, nutri
the manifested capacity of a subject to perform intentional actions
bertolini2022-robots-ai-legal-subjects
From a philosophical perspective, agents are subjects who can act—i.e., perform actions—while agency denotes the manifestation of such capacity ( Schlosser, 2015 ). However, “actions are doings, but not every doing is an action” ( Himma, 2009 ): according to the main variations of the “standard conception”, an event may be deemed as an action only if brought about intentionally ( Anscombe, 1957 ;
embodied capacity to choose and preserve autonomy within maternity-care relations
yuill2020-womens-decision-making-informed-choice-birth
The review outcomes, which included 10 studies of home births and one of free birth, suggest that birthing outside of the hospital is a common route women take if they are concerned with control over their bodies and agency in their care. Pursuing home birth, in which limited medicalisation is ideal, can be viewed as a choice that is informed by and reflects women’s desires for autonomy and integr
informed choice developed through risk education
hausman2015-evidence-libertarian-paternalism
Investing in risk-savvy citizens, by contrast, enables a sustainable solution: citizens who see through manipulation and can make informed decisions themselves.
authority to act for a principal and create legal relations between that principal and third parties
bertolini2022-robots-ai-legal-subjects
Indeed, in a narrower sense, the term “agency” also refers to that institution, or rather set of norms, allowing and regulating the fiduciary relationship whereby a subject—the “agent”—is expressly or implicitly authorized to act on behalf of another subject—the “principal”—to create legal relations between the latter and third parties. Thus, an agent who acts within the scope of authority conferr
capacity to change one's environment, life course, and actions
frank2019-human-biases-autonomous-vehicle-moral-dilemmas
Study 5 tests another alternative explanation for people’s moral decisions, specifically whether the prevalent decision to sacrifice the passenger is caused by the inference of passenger agency. The concept of agency refers to humans’ capacity to change their immediate environment, shape the course of their lives, and control their actions 33 . In this and other research on the moral dilemmas of a
intentional and responsible capacity to act in morally novel situations
de-cremer2023-ai-tools-organizational-ethics
When we expect that AI systems will be ethical decision-makers in organizations, we are ultimately expecting that these systems would be able to reason, think and make judgment calls about the most morally appropriate course of action, across a wide range of managerial contexts (Mittelstadt, 2019 ; De Cremer, 2022 ). Crucially, given that organizations operate in a volatile, uncertain, complex, an
retained human authority and responsibility for the final clinical decision
lysaght2019-ai-assisted-decision-making-healthcare
Maintaining professional integrity when interacting with the AI-assisted CDSS and incorporating it into practice. This will involve implementing systems that encourage doctors to interact with AI-assisted CDSS in ways that augment their clinical decision-making without compromising their primary responsibilities and duties to patient care. At this present time, developers should program the AI alg
a capacity to act that requires a separate argument before it creates legal entitlements
ienca2021-on-neurorights
A “right to agency, or the freedom of thought and free will to choose one’s own actions” has been advocated by Yuste et al. (2021) . Although these authors use these three notions as synonyms, as indicated by the disjunctive logical operator “or,” agency, freedom of thought and free will typically denote quite distinct concepts. Agency, as it is widely discussed in the philosophy of action literat
authorship and practical control over one's digital choices
kozyreva2020-citizens-internet-cognitive-tools
The main ethical ambiguity of persuasive choice architectures and commercial nudging resides in their close ties to other types of influence, such as coercion and, in particular, manipulation. Coercion is a type of influence that does not convince its targets but rather compels them by eliminating all options except for one (e.g., take-it-or-leave-it choices). Manipulation is a hidden influence th
intentionality embodied by an active material trace
malafouris2021-mark-making-human-becoming
I begin with our first question about the process of making: Where does the meaning and agency of ‘making’ reside? What kind of actions, intentions, anticipations, thoughts or feelings does the making of these simple marks we have drawn entail? The easiness by which the literate reader of this article is able to perform any such simple actions, as well as to perceive and project meaning to their p
the alignment or conflict between decision-maker and subject interests in prediction-supported choices
chen2020-predictably-unequal-algorithmic-clinical-prediction
In many of the non-medical examples, there are clearly competing interests—for example, between society’s need for safety and security and an individual’s claim to freedom and freedom from harassment; between a lending institution’s responsibility to remain financially healthy and an individual’s desire for a loan. In these conditions, predictions can be said to be “polar”—i.e., one end of the pro
graded decision and adaptive-action capacities indexed by the model level needed for communication, prediction, and control
levin2022-technological-approach-mind-everywhere
• Agency—a set of properties closely related to decision-making and adaptive action which determine the degree to which optimal ways to relate to the system (in terms of communication, prediction, and control) require progressively higher-level models specified in terms of scale of goals, stresses, capabilities, and preferences of that System as an embodied Self acting in various problem spaces. T
the cognitive, psychological, time, and material resources a recipient must use to benefit from an intervention
adams2016-population-interventions-agency
There are a number of reasons why high-agency population interventions may reinforce socioeconomic inequalities. Exerting agency requires individuals to rally their cognitive, psychological, time, and material resources [ 7 ]—all of which tend to be socioeconomically patterned. More socioeconomically advantaged people, with better health literacy (a cognitive resource) [ 17 ], may find it easier t
a disputed feeling of control over bodily movement or thought
milliere2018-psychedelics-meditation-self-consciousness
Firstly, the sense of agency is an ambiguous concept, which has been construed both as a feeling of control over one's bodily movements allegedly produced by comparator mechanisms, and as a feeling of control over the production of one's thoughts.
autonomy threatened when design installs habits and goals not voluntarily chosen
danaher2020-internet-cognitive-enhancement
Persuasive design creates different types of distractions. The first ones are functional, meaning we are directed away “from information and actions relevant to our immediate tasks and goals” (Williams 2018 , 50). This is the most common type of distraction and it happens, for example, when we interrupt our work flow in order to check email or other notifications. The second type of distractions a
choice retained despite environmental steering
bucher2020-nudges-real-life-food-purchasing
Nudging has been proposed as a promising environmental intervention strategy for modifying food choices. The term ‘nudge’ was originally coined by Thaler and Sunstein in 2008 and defined as: ‘ Any aspect of the choice architecture that alters people’s behaviour in a predictable way, without forbidding any options or significantly changing their economic incentives’ (p.6 ) [ 8 ]. Nudging became pop
individual freedom or autonomy potentially undermined by a nudge
petrescu2016-public-acceptability-nudging-obesity
As noted previously, nudging to improve health (and other outcomes) has been criticised by ethicists and others for potentially undermining autonomy and being coercive [ 10 , 11 , 15 ].
user autonomy preserved by prompting reflection rather than censoring content
pennycook2022-nudging-social-media-accuracy
Another important practical question is how accuracy prompts may interact with other approaches to fighting misinformation. One appeal of accuracy prompts relative to most other interventions is that accuracy prompts entirely preserve user autonomy and do not require any centralized definition of truth versus falsehood. Nonetheless, accuracy prompts may interact beneficially with more traditional
a user's capacity to influence many contacts through ordinary public expression
coviello2014-emotional-contagion-social-networks
Our estimates of the social contagion of emotional expression suggest that there may be large-scale spillovers in online networks. What people feel and say in one place may spread to many parts of the globe on the very same day. Yet the 1.5∶1 estimated ratio of the indirect to the direct effect is actually somewhat lower than other kinds of network effects measured experimentally. For the spread o
an organism's active contribution within reciprocal organism-environment dependence
baggs2020-ecological-psychology-enactivism-action
We noted that both approaches propose that adaptive behavior emerges from dynamic interactions. However, whereas Ecological Psychology has emphasized “generic agency” and lawful constraints in co-dependence, enactivists have emphasized individual contribution to meaning that is “brought forth” (enacted) by active agency, in lived experience. Ecological psychologists share with enactivists the focu
argued to result from relationships between human beings and their environment
carter2024-child-centred-care-concept
collective use of social media to contest stereotypes and build inclusive spaces
clark2021-weight-stigma-social-media
However, social media could also be used as a positive agent of change.
culturally attributed beliefs, desires, concerns, and responsiveness of gods
norenzayan2012-mentalizing-deficits-belief-personal-god
Believers intuitively treat gods as intentional agents with mental states who enter into social relationships with humans, using supernatural powers to assuage existential concerns, respond to human desires, and monitor their social behaviour [1] – [5] .
enculturated action selected through representational or deontic pathways
constant2021-representation-wars-active-inference
Having said this, the dual aspect architecture in Figure 3 means that the representationalist and dynamic pathways can happily live side-by-side, mutually informing each other – but both are sufficient for enactive engagement with the niche on their own. The distinction between the pathways – or routes to (subpersonal) action selection have some important implications. For example, deontic action
increasing choice over one's proximal cultural memberships
smith2019-cultures-persons-individual-variability
Over the course of this developmental process, the individual becomes less dependent on others for survival and better able to exercise greater agency in choosing his or her proximal cultural groupings and the micro-cultures of relationships within these proximal cultures ( Bandura, 2001 ). This general process is individualized and sorted ( Fowler et al., 2011 ) at each stage by the genetic profi
inferred responsibility from proximity to a vehicle's apparent control position
frank2019-human-biases-autonomous-vehicle-moral-dilemmas
The logistic regression on the Study 5 sample, reported in Table 2 , finds that the passenger’s seating position in the back seat results in a 2.23 times higher likelihood of the pedestrian being sacrificed relative to the front-seat position ( OR 2.23, 95% CI: 1.24–4.03). The effect is highly significant (p = 0.007) and supports the hypothesis that people’s moral decisions are affected by the inf
voluntary mental self-determination protected against coercive intervention
schleim2021-neurorights-history-brain-control
As already stated in the introduction, the four main neurorights are: (1) cognitive liberty; (2) mental privacy; (3) mental integrity; and (4) psychological continuity. The first, sometimes also called the right to mental self-determination, has two aspects: access to neurotechnologies and protection against their coercive and unconsented use; cognitive liberty is also considered the most fundamen
willingness to make a hypothetical vaccination choice within sociopolitical constraints
baumgaertner2018-ideology-trust-vaccination
Our solution to this problem is as follows. We designed two hypothetical questions which correspond to slightly different scenarios. Question 1 simulates a low-risk setting. We asked our interviewees to imagine that they are currently “missing the vaccine for the following diseases but there is no immediate risk of getting infected.” Respondents then gave separate answers for pertussis, measles, a
the 1992 sense, Schmidt: PLANT HORMONE-CONTAINING substances - which the 2017 definition explicitly rules out
yakhin2017-biostimulants-in-plant-science-a-g
“Plant hormone-containing substances that can stimulate growth when exogenously applied.”
the industry council definition: stimulating natural processes for nutrient uptake, efficiency and abiotic stress tolerance, with no direct action against pests
yakhin2017-biostimulants-in-plant-science-a-g
“Contain substance(s) and/or micro-organisms whose function when applied to plants or the rhizosphere is to stimulate natural processes to enhance/benefit nutrient uptake, nutrient efficiency, tolerance to abiotic stress, and crop quality.
AND THE BOUNDARY WITH PGRs IS AN ATTRIBUTION RULE, NOT A COMPOSITION RULE: `biostimulants can contain traces of natural plant hormones, but their biological action should not be ascribed to them, otherwise they should be registered as plant growth regulators.` The same bottle is one product or the other depending on what its effect is credited to.
yakhin2017-biostimulants-in-plant-science-a-g
“From a legal point of view, biostimulants can contain traces of natural plant hormones, but their biological action should not be ascribed to them, otherwise they should be registered as plant growth regulators” (Bulgari et al., 2015)
DEFINED BY EXCLUSION FROM TWO LEGAL CATEGORIES: `biostimulants cannot by definition be pesticides or fertilizers`, with seven citations behind the exclusion. The category's edges are drawn by its neighbours.
yakhin2017-biostimulants-in-plant-science-a-g
Likewise, biostimulants cannot by definition be pesticides or fertilizers (Russo and Berlyn, 1991; Karnok, 2000; Hamza and Suggars, 2001; Banks and Percival, 2012; Du Jardin, 2012; Torre et al., 2013, 2016)
THE EFFICIENCY SENSE, defined by enhancing nutrient use efficiency alongside an existing fertilisation plan
yakhin2017-biostimulants-in-plant-science-a-g
“Material that, when applied to a plant, seed, soil or growing media - in conjunction with established fertilization plans, enhances the plant’s nutrient use efficiency, or provides other direct or indirect benefits to plant development or stress response.
THE EXPLICITLY NON-NUTRITIONAL SENSE: the aim is NOT to supply nutrition but to stimulate metabolism
yakhin2017-biostimulants-in-plant-science-a-g
“Are organic products composed of peptides, amino acids, polysaccharides, peptides, humic acids, and/or phytohormones, etc. for immediate uptake and availability within the plant.
THE HORMONE-DEPENDENT SENSE, where the important benefits are said to REST on influencing hormonal activity
yakhin2017-biostimulants-in-plant-science-a-g
Many important benefits of biostimulants are based on their ability to influence hormonal activity.
THE HORMONE-EXCLUDING SENSE, where phytohormones are PROHIBITED by regulation
yakhin2017-biostimulants-in-plant-science-a-g
“It must be remind that the biostimulant activity does not have to derive from the addition of phytohormones (Attached 6, codicil 4.1).
THE MICROORGANISM SENSE, where the biostimulant is a living organism rather than a substance
yakhin2017-biostimulants-in-plant-science-a-g
“Both biocontrol microorganisms (BCMs) and plant growth-promoting microorganisms (PGPMs) can be defined as “biostimulant microorganisms,” able to foster plant growth and defence against pathogens throughout the crop life cycle, from seed germination to plant maturity.
THE NEGATIVE/REGULATORY SENSE, defined by what it is not: neither a fertilizer nor a pesticide
yakhin2017-biostimulants-in-plant-science-a-g
“Materials that are neither a fertilizer nor a pesticide, but when applied to a plant will enhance their health, growth, and protection.
THE NUTRITIONAL SENSE: it contributes to crop nutrition and healthy development by its mode of action
yakhin2017-biostimulants-in-plant-science-a-g
“Natural or synthetic products of either mineral or organic composition that by their mode of action positively contribute to crop nutrition and the development of healthy plants.
THE STRESS-MITIGATION SENSE, acting through the plant's own innate defence responses
yakhin2017-biostimulants-in-plant-science-a-g
“Single compounds or mixtures of compounds which mitigate the effects caused by abiotic stress agents, through the induction of innate plant defense responses.
THIS PAPER'S PROPOSED SENSE (2017): defined by EMERGENT PROPERTIES OF THE COMPLEX, and explicitly NOT by the presence of known nutrients, growth regulators or protective compounds. The differentia is what the effect is NOT reducible to
yakhin2017-biostimulants-in-plant-science-a-g
To distinguish biostimulants from the existing legislative product categories including essential nutrients, pesticides, or plant hormones a biostimulant should not solely function by virtue of the presence of elements or compounds of known function. We propose, therefore, a definition of a biostimulant as “a formulated product of biological origin that improves plant productivity as a consequence
The term biostimulants refers to substances of biological origin or microorganisms which, when applied to plants either via root drench, foliar spray, or a combination of both, is intended to stimulate natural processes in the plant that is responsible for efficient plant nutrient use efficiency and growth processes and/or an increase in the tolerance to abiotic and biotic stress, irrespective of the plant-beneficial nutrient content of the substances [ 1 , 2 ].
ali2021-biostimulant-properties-of-seaweed-extracts-in-plants
The term “biostimulant” was first proposed by Zhang and Schmidt (1997) to denote “ materials that, in minute quantities, promote plant growth .” The PBs referred to in the former article were humic substances and macro-algal extracts whose stimulatory effect on plants was essentially suggesting a hormonal mode of action.
rouphael2018-synergistic-biostimulatory-action-designing-the-next-generation
for the authors a class of crop input that can stand in for part of the agro-chemical inputs
shukla2019-ascophyllum-biostimulants
Plant biostimulants are a new class of crop input, offering a potential alternative to traditional, agro-chemical inputs, and, in most cases, can reduce the application rates of synthetic fertilizers and pesticides by enhancing their efficacy
the 1991 sense, Russo and Berlyn: “materials of little or no fertilizer value that accelerate plant growth” - defined by what it is worth as a fertiliser
yakhin2017-biostimulants-in-plant-science-a-g
“Materials of little or no fertilizer value that accelerate plant growth, usually when used at low concentrations.”
the 2001 sense quoted by Sharma: a PLANT-PROTECTION product working by stimulating defence or by competing with harmful organisms - a definition the others do not share at all
yakhin2017-biostimulants-in-plant-science-a-g
“Products intended to protect plants against harmful organisms by stimulating defence mechanisms in the plant or by competing with harmful organisms for space and nutrients in the phyllosphere or rhizosphere.”
the 2001 sense, McCarty: a term the literature itself calls AMBIGUOUS, covering microbes, hormones, soil conditioners and microbe energy sources
yakhin2017-biostimulants-in-plant-science-a-g
“An ambiguous term used to encompass non-nutritional growth-promoting substances such as microbes, plant growth hormones, soil conditioners and microbe energy sources.”
the 2003 sense, Beard in Schmidt et al.: defined by a RESIDUAL - a response that cannot be attributed to traditional plant nutrients
yakhin2017-biostimulants-in-plant-science-a-g
An organic material that, when applied in small quantities, enhances plant growth and development such that the response cannot be attributed to application of traditional plant nutrients.
the definition by exclusion: substances and materials other than nutrients and pesticides that modify plant physiology
yakhin2017-biostimulants-in-plant-science-a-g
“Substances and materials, with the exception of nutrients and pesticides, which, when applied to plants, seeds or growing substrates in specific formulations, have the capacity to modify physiological processes of plants in a way that provides potential benefits to growth, development and/or stress response.
the safety criterion written into one national definition - no risk to human, animal or natural environment
yakhin2017-biostimulants-in-plant-science-a-g
“They mean inorganic and organic substances or its mixtures positively affecting plant development or other physiological processes in plants.
the small-quantity criterion: an organic material whose response cannot be attributed to traditional plant nutrients
yakhin2017-biostimulants-in-plant-science-a-g
“Is an organic material that, when applied in small quantities, enhances plant growth and development such that the response cannot be attributed to the application of traditional plant nutrients.
not defined in this paper's own words; closeness of predictions to reference values
brockherde2017-bypassing-kohn-sham-machine-learning
Following a direct prediction approach with the ML-HK map increases the accuracy consistently on both 1D examples and 3D molecules.
not defined in this paper's own words; correctness of the selected answer
kung2023-chatgpt-usmle-medical-education
Exam items were first encoded as open-ended questions with variable lead-in prompts. This input format simulates a free natural user query pattern. With indeterminate responses censored/included, ChatGPT accuracy for USMLE Steps 1, 2CK, and 3 was 75.0%/45.4%, 61.5%/54.1%, and 68.8%/61.5%, respectively ( Fig 2A ). Accuracy of ChatGPT on USMLE. For USMLE Steps 1, 2CK, and 3, AI outputs were adjudica
not defined in this paper's own words; how close estimated haplotypes are to the truth
delaneau2019-haplotype-estimation
As expected, increasing P yields to appreciable improvements in accuracy: for instance, the P = 2 and P = 4 configurations decrease the error rate of P = 1 by 31 and 42% on the largest sample size, respectively.
not defined in this paper's own words; reduction of systematic negative bias
pauly2016-catch-reconstructions-global-marine-fisheries
Our reconstructed catch data, which combines the data reported to FAO with estimates of unreported catches (that is, reconstructed data are ‘reported FAO data+unreported catches') include estimates of uncertainty ( Fig. 1 ) associated with each national reconstruction. Note that many reconstructions are associated with high uncertainty, especially for earlier decades, for sectors such as subsisten
the percentage of all proteins from the test data that are classified into their correct protein structural classes
newaz2020-network-protein-structural-classification
100 minus the mean absolute percentage error of a model's predictions
sujeeun2020-nanofibrous-scaffold-performance
The MAPE is the most common statistical measure used to forecast error and is calculated as the average of the absolute percentage errors of predictions.
AS OPERATIONALISED HERE, for each TRUE lineage take the BEST MATCH among the inferred ones by Kendall rank correlation, then average over true lineages. A method that returns spurious extra lineages is not penalised for them by this score unless they displace a better match
street2018-slingshot-cell-lineage-and-pseudot
The accuracy of inferred pseudotimes was measured as follows: for each true lineage, identify the best match amongst all inferred lineages, according to the Kendall rank correlation coefficient between the true and inferred pseudotime variables. Averaging these values over all true lineages yields the accuracy score for a particular method on a particular dataset.
ON IMAGES FROM OTHER SOURCES, the same model, the same 38 classes: 31.40% and 31.69%. ONE WORD, TWO POPULATIONS, A THIRTY-EIGHT POINT GAP - and the paper reports both
mohanty2016-using-deep-learning-for-image-base
Using the best model on these datasets, we obtained an overall accuracy of 31.40% in dataset 1, and 31.69% in dataset 2, in successfully predicting the correct class label (i.e., crop and disease information) from among 38 possible class labels. We note that a random classifier will obtain an average accuracy of only 2.63%.
ON THE HELD-OUT SPLIT of the dataset the model was trained on: 99.35%
mohanty2016-using-deep-learning-for-image-base
The trained model achieves an accuracy of 99.35% on a held-out test set, demonstrating the feasibility of this approach.
an overall measure of the classification of traits into clusters
foley2021-colocalization-algorithm-genetic-risk
per-family binary: one classifier per family with equal positives and negatives, which is what every number in Table 2 is
asgari2015-protvec
In order to evaluate the strength of ProtVec, we performed classifications of 7,027 protein families and obtained a weighted average accuracy of 93 ± 0.06%, which exhibits a more reliable result than the existing methods.
Corona Virus Disease 2019
li2020-the-impact-of-covid-19-epidemic-declaration
the disease caused by severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2)
murphy2021-psychological-characteristics-associated-with-covid-19-vaccine
Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2), the virus that causes COVID-19, reached pandemic status on March 11th, 2020.
not defined in this paper's own words; the WHO's official name for the disease, released after this paper was accepted
zhou2020-a-pneumonia-outbreak-associated-wi
Note added in proof: Since this paper was accepted, the ICTV has designated the virus as SARS-CoV-2 15 ; in addition, the WHO has released the official name of the disease caused by this virus, which is COVID-19
the official WHO name of the disease caused by this virus, released after the paper was accepted
wu2020-new-coronavirus-respiratory-disease-china
Note added in proof: Since this paper was accepted, the ICTV has designated the virus as SARS-CoV-2 30 ; in addition, the WHO has released the official name of the disease caused by this virus, which is COVID-19 31 .
not defined in this paper's own words; the name whose appearance in a report sets off infection control and anxiety
simpson2020-radiological-society-of-north-amer
As a result, including “COVID-19” in a radiology report could trigger a cascade of events including infection control measures and anxiety for both the managing provider and the patient.
coronavirus disease 2019
liu2020-the-experiences-of-health-care-providers-during, mazza2020-a-nationwide-survey-of-psychological-distress-among, rossi2020-covid-19-pandemic-and-lockdown-measures-impact
the novel coronavirus
stanton2020-depression-anxiety-and-stress-during-covid-19
the pandemic of acute respiratory syndrome in humans described here as arising with SARS-CoV-2
renzo2020-eating-habits-and-lifestyle-changes-during-covid
On December 12th 2019, a new coronavirus (SARS-Cov2) emerged in Wuhan, China, sparking a pandemic of acute respiratory syndrome in humans (COVID-19).
The virus subsequently spread rapidly across the world and led to the pandemic known as COVID-19.
ozdin2020-levels-and-predictors-of-anxiety-depression-and
the misconception sense ('the computer does the creativity') versus the human decision-making sense the essay defends
can-computers-create-art
Computer animation is another technology that scared traditional artists. In the early days before they found Lasseter, the Lucasfilm Graphics Group made many attempts to interest Disney animators in their work (Price 2008). Smith later said: “Animators were frightened of the computer. They felt that it was going to take their jobs away. We spent a lot of time telling people, ‘No, it’s just a tool
Creativity is defined as an ability to interact with cognitive abilities, personal qualities, and environmental factors to produce novel and effective ways of solving problems.
Li2025-meta-analysis-of-fmri-studies-related-to-mat
not defined in this paper's own words; a proposed criterion for artisthood; also the thing a tool is said not to supply
can-computers-create-art
Finally, three related criteria that have intuitive appeal are the notions of creativity, growth, and responsiveness. They are important for human artists, so perhaps they should be for AI artists as well.
as operationalised in the imaging literature: alternative-use, metaphor, riddle and improvisation tasks standing in for the construct
Li2025-meta-analysis-of-fmri-studies-related-to-mat
The research for articles related to creativity keywords such as “creativity,” “divergent thinking,” “creative idea generation,” “insight,” “metaphor,” “improvisation,” “aha,” “original idea,” “remote associates,” “heuristic prototype,” “creative thinking” AND “neuroimaging,” “brain imaging,” “cerebral correlates” “functional magnetic resonance imaging” and its abbreviation.
domain-specific: mathematical creativity as general creativity combined with mathematical ability, and therefore not the same object
Li2025-meta-analysis-of-fmri-studies-related-to-mat
It has been suggested that mathematical creativity is a combination of general domain creativity and domain-specific mathematical ability ( Schoevers et al., 2020 ).
not defined in this paper's own words; a capacity treated as possibly not uniquely human but a socio-cultural spectrum AI may partly penetrate
humans-versus-ai-whether-and-why-we-prefer-human
Art created by AI has been met with both success and controversy (see Chatterjee, 2022 ); and, very recently, these creative products have permeated into mainstream culture like museums and artistic industries (Diaz, 2022 ; Kaleagasi, 2017 ; Kinsella, 2018 ; Zulić, 2019 ). Though contention ensues over whether artificial programs are capable of producing “creative” products (in line with the compu
uniquely-human sense versus a spectrum of abilities AI may be able to penetrate
humans-versus-ai-whether-and-why-we-prefer-human
Several interpretations can be drawn from these results. Firstly, participants may hold a nuanced view of creativity: while humans can achieve creativity across cognition and production, AI can produce only surface-level reflections of creative thinking according to raters. Artworks that are created by humans may reflect a profound human experience—and thus be deemed more monetarily worthy—that AI
not defined in this paper's own words; per-position count of overlapping features
lawrence2013-genomic-ranges-software
A common method of summarizing a genomic data set is to calculate the coverage, i.e., the number of features in the data set overlapping each position in the genome. This is useful in ChIP-seq analysis, where many peak detection methods operate on the coverage.
not defined in this paper's own words; retained-length value factor
bolger2014-trimmomatic-flexible-trimmer
The second factor models ‘coverage’, and provides a linear score based on retained sequence length
not defined in this paper's own words; the share of reactions a method can estimate
noor2013-gibbs-energy-component-contributions
Group contribution methods greatly increase coverage, albeit at the price of decreased precision.
the fraction of relevant reactions a method can estimate at all
noor2013-gibbs-energy-component-contributions
However, even this wide collection covers less than 10% of biochemical reactions in standard metabolic reconstructions, such as the E. coli model iAF1260 [5] .
representation sense: any protected overlap with a species distribution
venter2014-targeting-global-protected-area-expansion-biodiversity
We assessed the occurrence of threatened vertebrates within protected areas using a representation target and an adequacy target. The representation target was achieved if any portion of the species' distribution overlapped with the protected area network. To set adequacy targets we followed the method of Rodrigues et al. [23] to scale the target to the species' overall geographic range size. Comp
not defined in this paper's own words; engagement for inherent satisfaction
ng2018-growth-mindset-intrinsic-motivation
Intrinsic motivation is inherent, as it drives the direction of an individual’s behavior and self-determination [ 16 ]. Self-determination is important in the development of beings to become more effective and refined in their reflection of ongoing experiences [ 17 ]. When students experience the inherent satisfaction of the activity itself, they will show intrinsically motivated behavior. If stud
not defined in this paper's own words; internal motivation that external rewards may suppress
vlaev2019-financial-incentives-health-behavior
Motivating behavior change in health is much more complex than can be accomplished with a single strategy and offering incentives (both positive and negative) are just one route to achieving improvements in health outcomes. Financial incentives are increasingly seen as an important vehicle to bring about changes in behavior that lead to healthier lifestyles and supporters and critics alike can be
intrinsic motivation is the propensity to seek out pleasure, novelty, aesthetics, and spontaneous interest – it is motivation to perform a behavior or action for the inherent enjoyment that doing so provides
stevens2020-affective-determinants-physical-activity
the individual wanting to maintain the new behaviour
kwasnicka2016-behaviour-change-maintenance-theories
voluntary task engagement for inherent satisfaction
ng2018-growth-mindset-intrinsic-motivation
Most neuroscience studies have focused on research related to cognitive functions, such as attention, memory and decision-making. In addition to these cognitive studies, there is also the implicit nature of mindsets that lead to the malleability of self-attributes (e.g., intelligence) [ 6 ]. Subtle feedback and messages related to growth mindset can have noticeable effects on students’ attitudes a
the absolute DALY count, which rose between 2010 and 2021 mostly because populations grew and aged, against age-standardised DALY rates, which fell until 2019; one word names a count moving up and a rate moving down
ferrari2024-global-burden-371-diseases
Across the Level 1 causes, non-communicable diseases contributed the highest burden globally and was the only disease group for which DALYs increased between 2010 and 2021, from 1·47 billion (95% UI 1·32–1·64) in 2010 to 1·73 billion (1·54–1·94) in 2021 ( appendix 2 table S13 ). This increase was mostly due to population growth and ageing (165 of 204 countries increased in population between 2010
the absolute number of DALYs, which stays resolutely constant, against age-standardised DALY rates, which fall steadily; one word names both a quantity health systems must manage and a rate that shows health improving
vos2020-global-burden-369-diseases
Taking into account population growth and shifts in age structure, health continues to improve at the global level. The absolute burden of disease and its associated impact on health systems, however, remain resolutely constant. Some diseases, such as diabetes, are increasing in burden, and more general all-cause DALY stagnation in some high SDI countries points out that further gains are not inev
counted in DALYs, deaths, prevalent cases, YLLs and YLDs, as GBD 2019 estimates
roth2020-global-burden-cardiovascular-diseases
GBD 2019 is a multinational collaborative research study that estimates disease burden for every country in the world ( 1 , 4 ).
defined into subjective and objective burdens
setyawati2024-family-caregiving-islamic-perspective
not defined in this paper's own words; what much of the debate is rooted in
Levi2022-error-correction-and-improved-precision-of-s
Methodological considerations The question of whether neurons transmit information via rate or temporal codes has been discussed extensively ( König et al., 1996 ; Salinas and Sejnowski, 2001 ; Cohen and Kohn, 2011 ), and much of the debate is rooted in definitions.
a statement that aims at expressing the essential nature of X in a way that includes all instances of X while excluding all instances that aren't really X
andersen2022-definition-of-stigma
descriptive versus prescriptive or regulatory
artefacts-and-family-resemblance
On the other hand, the above considerations are meant to provide only a regulatory definition of artefacts, which: […] while modifying the original vague meaning of a word, sharply delineates its extension, but takes into consideration the original vague boundary of its extension, as suggested by the original meaning. (Ajdukiewicz 1974 , p. 75)
not defined in this paper's own words; whose ownership one respondent put the whole problem down to
Laubach2018-what-if-anything-is-rodent-prefrontal-cortex
One respondent wrote: “Depends on whose definition of the ACC is used.” We are not aware of anatomic studies or reviews on the ACC that do not include the prelimbic cortex (also known as area 32) as a core component of the ACC (e.g., the first anatomic collection dedicated to the ACC: Vogt and Gabriel, 1993 ).
not defined in this paper's own words; loss of all hope of improvement, which helpless nurses still keep
azizi2023-helplessness-nurses-covid
Helplessness differs from powerlessness and hopelessness, which in some cases have overlapped with these concepts
not defined in this paper's own words; one of the five attributes, a lasting loss of hope in the pandemic
lee2021-entrapment-covid-pandemic
Sustained hopelessness is positively correlated with demoralization and eventually influences suicidality and suicidal ideation
an emotional condition in which the individuals express a sense of giving up, an inability to improve and control one´s situation, leading to mental health decline and the desire for a hastened death
martins2024-spiritual-distress-hopelessness
little or no belief in a positive future
hua2025-demoralization-concept-analysis
Presence is the practice of engaging with patients in a manner that recognizes and respects their holistic essence
monteiro2025-spiritual-awakening-concept
a technique that engages patients by recognizing and respecting their holistic nature, fostering an authentic interpersonal environment, and treating patients as distinct individuals
coelho2025-spiritual-care-competence-palliative
it can mean both presence of family and presence of staff
larsson2023-feeling-safe-perioperatively
the subjective experience of actually being in the mediated virtual environment
oh2018-social-presence-systematic-review
Human and social capital are concepts that define positive individual and social power achieved through skills and solid social networks that are resources for development.
kobalgrum2022-social-sustainability-workplace
not defined in this paper's own words; a community's networks and shared values of trust, inclusion and mutual support
moya2022-social-resilience-definition
This set of values for social support constitute something that in sociology is referred to as social capital, which was soon associated with the development of resilience [ 56 , 71 ].
the ability to make connections with others in a social network, where trust, reciprocity and cooperation are paramount
feito2018-high-intensity-functional-training
the sum of the actual and potential resources embedded within, available through, and derived from the network of relationships possessed by an individual or a social unit
thomas2021-social-capital-financial-literacy
not defined in this paper's own words; surface structural protein containing RBD
roltgen2020-defining-the-features-and-duration
The virus causing COVID-19 belongs to the Sarbecovirus subgenus (genus Betacoronavirus ) together with the severe acute respiratory syndrome coronavirus (SARS-CoV) and has been designated SARS-CoV-2 ( 9 ). Coronaviruses contain four structural proteins, including spike, envelope, membrane, and nucleocapsid (N) proteins. The spike surface glycoprotein contains the receptor binding domain (RBD), whi
not defined in this paper's own words; the output signal
Huang2016-persistent-neural-activity-in-auditory-corte
LFPs and magnetic fields have been considered to partially reflect inputs to a region of tissue, in contrast to spike activity, which has been considered to preferentially reflect output to connected areas ( Buzsáki, 2004 ; Buzsáki et al., 2012 ; Hämäläinen et al., 1993 ).
a very local event in time
mazzoni2015-local-field-potential-integrate-and-fire
the signal
Levi2022-error-correction-and-improved-precision-of-s
When the number of spikes is fixed, the reliability profile necessarily increases monotonically. However, in the presence of spikes due to nonspecific inputs, the reliability profile may exhibit a local peak.
Electroencephalography (EEG) The EEG is an electrophysiological noninvasive technique for the recording of electrical activity arising from the human brain [ 38 ].
dzedzickis2020-human-emotion-recognition-review-of-sensors-and
electroencephalogram
chao2022-islamic-animal-ethics
electroencephalography
berendt2015-veterinary-epilepsy-definition, forenzo2024-deep-learning-bci-continuous-tracking
not defined in this paper's own words; lipid-bound vesicles secreted into the extracellular space, divided into three subtypes by how they are made rather than by what can be detected
doyle2019-overview-of-extracellular-vesicles
Extracellular vesicles (EVs) are lipid bound vesicles secreted by cells into the extracellular space \ [1, 2\]. The three main subtypes of EVs are microvesicles (MVs), exosomes, and apoptotic bodies, which are differentiated based upon their biogenesis, release pathways, size, content, and function
THE 2023 DEFINITION, ALL THREE CLAUSES NEGATIVE OR STRUCTURAL AND NONE ABOUT ORIGIN: `particles that are RELEASED FROM CELLS, are DELIMITED BY A LIPID BILAYER, and cannot replicate on their own`. Nothing about where in the cell they came from - which is the whole point of the accompanying deprecations.
welsh2024-minimal-information-for-studies-of
Definition: The term ‘extracellular vesicles’ (EVs) refers to particles that are released from cells, are delimited by a lipid bilayer, and cannot replicate on their own (i.e., do not contain a functional nucleus).
not defined in this paper's own words; selective processing of environmental information
danaher2020-internet-cognitive-enhancement
Cognition is hereby understood as the process of organizing and managing information and it includes acquiring (perception), selecting (attention), representing (understanding) and retaining (memory) information and using it to guide behavior (reasoning and coordination of motor outputs) (Bostrom and Sandberg 2009 , 312). Cognitive enhancement thus is the increase or augmentation of the cognitive
not defined in this paper's own words; selective emphasis on perceptual information
thierry2016-neurolinguistic-relativity-language-cognition
In a recent study by Flecken, Athanasopoulos, Kuipers, and Thierry ( 2015 ), this was precisely what we aimed to do. We presented two groups of native speakers of German or English with video animations of a black dot travelling along a trajectory (straight or curved) toward a shape (square or hexagon). Given that speakers of English, an aspect‐language, are drawn to pay attention equally to traje
not defined in this paper's own words; looking time and fixation allocation within an installation
trondle2018-installation-art-aesthetic-experience
Due to lack of previous study and specific hypotheses, we were primarily interested in assessing general areas of attention (by placing attention on eye fixations), and considering whether viewers appreciated the installed elements as stand-alone artworks or as components that interact with the ambient environment. This latter approach was hypothesized to be an important aspect of installation art
not defined in this paper's own words; selection of preference dimensions for a sharing decision
pennycook2022-nudging-social-media-accuracy
The second line of theorizing involves the importance of attention. A core tenet of psychological theory is that when attention is drawn to a particular dimension of the environment (broadly construed), that dimension tends to receive more weight in subsequent decisions ( Ajzen 2001 ; Simon and Newell 1971 ). While attention has been a primary focus in psychology, it has only recently begun to be
not defined in this paper's own words; content-steered allocation of audience processing
geise2023-integrating-media-content-reception-effects
Another example could be suspense: We know that suspense in media strongly affects the audience, and screenwriters and directors possess a lot of knowledge about how to elicit this phenomenon (e.g., Brewer and Lichtenstein, 1982 ; Douchet, 1985 ; Vorderer et al., 2006 ). Moreover, some prior work has focused on the brain mechanisms of suspense precisely because of its potential to take control of
not defined in this paper's own words; estimated precision of prediction-error signals
fabry2019-mind-wandering-reader-predictive-enculturation
Whatever perceptual and active inferences contribute to the reduction of prediction errors is modulated by the estimated precision (i.e., the inverse variance) of prediction error signals (Hohwy, 2013 ; Clark, 2015 ; Seth, 2015b ). It has been suggested that precision estimation is equivalent to attention (Feldman and Friston, 2010 ; Hohwy, 2013 ; Clark, 2016 ). Eye movements, generating virtual s
not defined in this paper's own words; context-sensitive contributor to aesthetic experience
conway2013-neuroaesthetics-trouble-beauty
Experiences of beauty typically require attention and are accompanied by feelings of pleasure [11] , [27] , [44] . In the same way that basic studies at the interface of sensory neuroscience and art have been productive—not in addressing why art objects are beautiful but in uncovering the strategies that artists use to generate artwork—basic investigations of the mechanisms of attention, decision
not defined in this paper's own words; error and feedback monitoring
ng2018-growth-mindset-intrinsic-motivation
There is a small body of existing growth mindset studies using neuroscience methods. The study by Moser et al. [ 30 ] suggested that individuals with a growth mindset are receptive to corrective feedback, exhibiting a higher Pe (error positivity) waveform response, which is correlated with a heightened awareness of and attention to mistakes. Enhanced Pe amplitude was associated with enhanced atten
not defined in this paper's own words; selection of language-relevant aspects of experience
stephens2011-swearing-euphemisms-linguistic-relativity
By contrast, according to Slobin, thinking-for-speaking has more pervasive effects on attention, memory, and cognition generally [15] . For example, it is well established that attention plays a critical role in encoding information into episodic memory [16] . Accordingly, the fact that different languages require participants to attend to different aspects of the world when speaking may have cons
not defined in this paper's own words; sustained absorbed orientation toward a story
dijkstra2016-pronouns-literary-reading-perspective
Immersion is a multidimensional experience based on factors, whose contribution to the experience of being immersed varies with the situation. Factors which often reoccur in notions of immersion in narratives include the experience of mental imagery, emotional engagement with protagonists, transportation into the story world, and attention during reading [ 5 , 15 ]. Experiencing imagery during nar
not defined in this paper's own words; what the central executive controls
Camina2017-the-neuroanatomical-neurophysiological-and-p
The central executive is a system of attention control with limited processing capacity.
not defined in this paper's own words; neural selection, psychological capacity, time, data, commodity, and target of control
williams2020-struggle-human-attention
Epistemologically, attention is a multidisciplinary term that groups together diverse processes. To clarify what human attention is and how it works, we start by understanding the research development of the concept. Then, we observe it from the point of view of neurophysiology, neuropsychology, and economics to reveal its operation within the individual emotional and sensory system, as well as it
as selection: a mechanism for selecting and prioritizing representations, under which WM is attention to memory representations and the relation is conceptual, not empirical
oberauer2019-working-memory-attention
A different perspective on the relation between WM and attention emerges when attention is defined not as a resource but as a mechanism for selecting and prioritizing representations. In this perspective, attention does not explain the capacity limit of WM. Rather, we should consider WM as an instance of attention – specifically, WM is attention to memory representations. Holding a set of represen
perceptual engagement cultivated by aesthetic experience
mastandrea2019-art-wellbeing-aesthetic-emotion
Aesthetic experience has been associated with mindfulness meditation, as it leads to enhancing the capability of perceptually engaging with an object ( Harrison and Clark, 2016 ).
One definition of attention characterizes it as a limited resource for information processing (e.g., Wickens, 1980 ). Another concept of attention is as a process of (or mechanism for) selection of information to be processed with priority (e.g., Chun et al., 2011 ; Desimone & Duncan, 1995 )
oberauer2019-working-memory-attention
not defined in this paper's own words; reader resources allocated to salient text features
fechino2020-jakobson-levi-strauss-neurocognitive-poetics
According to different studies, one key feature for poetry is the rhyme scheme. It is considered as a voice-punctuation of the poem [38] and is a sound foregrounding (FG) that attracts easily readers’ attention and contributes to the poem’s musicality [65 p. 367] . FG includes all kinds of text defamiliarization and is considered as a deviation from common language [44] [66] [67] . Nevertheless, t
coordination around shared representational tools during learning
desutter2017-embodied-spatial-thinking-stem
Gestures, for example, have been shown to play an important role in learning interactions: they externalize imagistic aspects of thought and coordinate shared attention around representational tools during learning (Alibali & Nathan, 2012 ) and speech-gesture discordance indicates a learner’s receptiveness to instruction (Alibali & Goldin-Meadow, 1993 ; Breckinridge-Church & Goldin-Meadow, 1986 ).
aggregate traffic allocated to a topic
wu2015-production-information-attention-economy
Phenomena like these have been already observed in a wide range of information-rich environments 1 , 14 , 19 , 20 , 25 . During the period of increased attention we see a previously unobserved phenomenon, namely that new articles about the Olympic Games are created at a higher frequency. A weaker pattern is observed for Hurricane Sandy too. To quantify the temporal relation between demand and prod
a finite individual and collective market resource
kozyreva2020-citizens-internet-cognitive-tools
However, as new informational environments evolved and business models of Internet companies were refined, the goals and incentives of Internet design shifted as well. Human collective attention became a profitable market resource for which different actors compete. Fierce competition for human attention has led to the growing fragmentation of collective attention, with ever greater proliferation
active selection of relevant features while other features are ignored
colzato2008-religion-controls-visual-attention
Perceiving our world is an active process. We do not passively register the objects and events we encounter but explore and investigate them, attend to features and characteristics we find interesting and ignore those that we do not. As emphasized by the New Look perspective to human perception [1] , this suggests that our perception and attention reflect our moods, needs, expectations, and belief
measurable visibility through readers, social media, and mainstream news coverage
munafò2016-open-science-researchers-succeed
A similar study of over 1,700 Nature Communications articles found that OA articles receive 2.5–4.4 times the number of page views, and garnered more social media attention via Twitter and Facebook than non-OA articles ( Wang et al., 2015 ).
not defined in this paper's own words; spotlight or bottleneck metaphor that may summarize multiple mechanisms
thomas2018-educational-neuroscience-progress-prospects
Yet there are risks in a pure psychology approach. Psychological theory infers hidden causal mechanisms to explain and predict observed behaviour. For example, it infers mechanisms such as ‘working memory’ and ‘attention’, which are then imbued with certain properties: working memory has a ‘limited capacity’; attention works like ‘a spotlight’ or enforces a ‘bottleneck’ on perception. What is the
a model mechanism that visualizes factors learned for a prediction
lysaght2019-ai-assisted-decision-making-healthcare
While methods are available to allow users to visualise the factors that the machine has learned in making a particular prediction (e.g. graphical-based networks and attention mechanisms), some techniques are indecipherable even to software engineers (Burrell 2016 ).
aggregate crisis-focused search behavior following locally salient news
bento2020-information-seeking-local-covid-news
There was no observable trend in the search behavior in the days leading up to the announcements, suggesting the first “local” case indeed heightened the collective attention to the pandemic.
culturally trained engagement with material affordances
malafouris2021-mark-making-human-becoming
These experiential properties of marks and mark making practices are not something the modern observer can easily attend to without a great deal of perceptual unlearning . Our modes of attention have been entrained, and our modes of perception educated to see in the mark more than just a trace. For us, humans in the present, these engravings are not simply indexes of past creative gestures; rather
population-level content consumption rather than individual resource selection
lorenz-spreen2019-accelerating-collective-attention
Thus, we use the term collective attention in a sense that is closely related to the computational social science notion 11 – 13 , that measures various forms of population-level content consumption patterns 14 – 16 .
aggregate likes, comments, shares, and views received by content
bessi2016-user-polarization-facebook-youtube
By means of the Mantel test [ 22 ] we find a statistically significant (simulated p-value <0.01, based on 10 4 Monte Carlo replicates), high, and positive ( r = 0.987) correlation between the correlation matrices of Science and Conspiracy. In particular, we find positive and high correlations between users’ actions on YouTube videos for both Science and Conspiracy, indicating a similar strong mono
aggregate news volume allocated to an issue over calendar time
kereselidze2016-pandemic-media-attention-risk-perception
In all researched countries media attention, defined as the number of published news reports on influenza A H 1 N 1 , was highest in week 18 [ Table 2 ], when the WHO declared pandemic phase 4 and shortly thereafter, pandemic phase 5. Media attention rapidly waned in all countries and was followed only by smaller peaks in news coverage over the remaining course of the pandemic Figs 1 – 5 . Media a
allocation across correlated sensory and action dimensions
lynott2019-lancaster-sensorimotor-norms
In terms of processing and representing concepts, what does it mean that Minkowski 3 outperforms other measures in predicting lexical processing behavior? Firstly, it suggests that in modeling human performance we need to take into account multiple sensorimotor dimensions, and that reliance on a single, dominant dimension of perception or action experience is inadequate for capturing performance.
an analytic shift from individual encounters to above-individual forces
metzl2014-structural-competency-stigma-inequality
This paper describes a shift in medical education away from pedagogic approaches to stigma and inequalities that emphasize cross-cultural understandings of individual patients, toward attention to forces that influence health outcomes at levels above individual interactions. It reviews existing structural approaches to stigma and health inequalities developed outside of medicine, and proposes chan
an engrossed aesthetic stance toward difficult music
mencke2019-atonal-music-uncertainty-pleasure
Critically, AM affords an exemplary form of aesthetic musical experiences for systematic investigation since listening to AM tends to be a fully engrossing activity and is rarely done in parallel with other activities (running, doing homework and so on).
as a resource: a continuous quantity that can be split arbitrarily and allotted to different processes depending on task demands
oberauer2019-working-memory-attention
The idea of attention as a resource is that the cognitive system has a limited resource that can be used for carrying out so-called attention-demanding processes. The resource is assumed to be a continuous quantity that can be split arbitrarily and allotted to different processes, depending on task demands.
context-dependent admission of preference dimensions into a decision
pennycook2022-nudging-social-media-accuracy
Thus, even if people have a strong preference for not sharing inaccurate content (i.e., β F is as large, or larger than, other β values), how accurate content is may still have little impact on what people decide to share if the context focuses their limited attention on other dimensions . The accuracy-based account of misinformation sharing, then, is the hypothesis that β F is not smaller than th
coordinated stakeholder concern directed toward population-health consequences
clark2021-weight-stigma-social-media
Addressing weight stigma on social media will take a concerted effort across an expansive set of stakeholders, but the benefits to population health are consequential and well-worth our collective attention.
distributed aesthetic openness to actual and possible qualities
popova2020-enactivism-ecological-psychology-agency
Second, as described by Bence Nanay, a philosopher of perception, art objects require a distributed form of attention: because the aesthetic object and event is removed from everyday experience (i.e., is perceived as framed differently), we are both focused on the object and paying attention to everything that this object is or, potentially, can be ( Nanay, 2016 , pp. 24–25).
hyper-focus and preoccupation directed toward trigger sounds
schroder2020-misophonia-phenomenology-large-sample
We consider preoccupation an additional core symptom of misophonia, since approximately all subjects in our sample report hyper focusᵃ. Hyper focus was also reported in 82% of the sample of Edelstein et al[ 49 ] and an intervention targeting hyper focus has a clear effect on misophonia symptoms[ 59 ].
observable allocation of likes across news sources and topics
bakshy2020-selective-exposure-facebook-news-diet
In this paper, we perform a thorough quantitative analysis to characterise users’ attention dynamics on news outlets on Facebook. In particular, we study how 14 million Facebook users distribute their activity among 50000 posts, clustered by topics, produced by 583 pages (news outlets) listed by the Europe Media Monitor over a six-year time span. The downloaded data from each page include all of t
observable engagement with instructions and survey content
bosch2019-online-panels-social-science-research
MTurk participants who passed the initial screener also performed well on the attention manipulation checks. Specifically, 90% passed all four attention checks, and 98% passed three of them. Of the participants who passed the initial screener on Prime Panels, 78% passed all four attention checks, and 91.5% passed three of them. The performance of Prime Panels participants who failed the initial sc
orientation captured by surprise regardless of pleasingness or comprehensibility
menninghaus2017-measuring-aesthetic-emotions
The A esthemos includes the following scales to measure specific epistemic emotions [ 5 , 10 , 132 , 154 ] and pleasures of the mind [ 118 ]: (12) surprise, (13) interest, (14) intellectual challenge, and (15) insight. In line with the distinction between pleasingness and meaning as sources of enjoyment [ 2 , 110 , 139 , 140 ], we identified an epistemic emotions factor (F7_3) representing the sea
orientation toward products through signs, labels, and physical placement
bucher2020-nudges-real-life-food-purchasing
The harvest plot of information nudges using signage is shown in Fig. 4 and study characteristics and main findings are presented in Table 2 . Two studies could not be visualized in the harvest plots and are presented in Additional file 3 . Eight studies received a moderate quality rating, three studies received a weak quality rating, and three studies received a strong quality rating. Studies exa
part of a combined memory-attention-decision-process domain
cane2012-theoretical-domains-behaviour-change
The refined framework contains 14 domains and 84 component constructs (the number of component constructs in each domain is defined in brackets): ‘Knowledge’ (3), ‘Skills’ (7), ‘Social/Professional Role and Identity’ (9), ‘Beliefs about Capabilities’ (8), ‘Optimism’ (4), ‘Beliefs about Consequences’ (5), ‘Reinforcement’ (7), ‘Intentions’ (3), ‘Goals’ (6), ‘Memory, Attention and Decision Processes’
selective focus and heightened processing linking limited awareness to voluntary action
williams2020-struggle-human-attention
Neurophysiology defines attention as the ability to focus selectively on an object or task, and it is essential for a series of actions of the brain that link different cognitive functions. Similarly, it is understood as an activity increase in a certain brain area involved in the processing of a stimulus. Some researchers propose that attention is “the interface between the vast amount of stimula
sustained scholarly and public focus on a misconception after its formal definition
ruiz-martin2021-persistence-neuromyths-education
This result highlights that neuromyths are still the subject of attention almost two decades after their definition.
the informational analogue of price
wu2015-production-information-attention-economy
Our result shows that in many cases demand for information precedes its supply. We propose a model to interpret this finding, analogous to the law of supply and demand 26 . An increase in demand indicates a willingness to pay a higher price for a physical good, which in turn leads to an increase in supply. In the domain of information, attention plays the role of price: an increase in demand for i
the social target of language inferred from pronoun and content-word frequencies
su2020-covid-lockdown-weibo-twitter-psycholinguistic
In Wuhan, the uses of the first-person plural pronouns, second-person plural pronoun increase after a lockdown, while the use of first-person singular pronoun decreases. Previous reports confirm that first-person singular pronouns show attention to the self, whereas most other pronouns suggest attention to other individuals [ 36 ]. Moreover, “we” implies a sense of group identity sometimes [ 37 ].
trained monitoring and regulation of present mental contents
milliere2018-psychedelics-meditation-self-consciousness
Meditation refers to a set of cognitive training techniques and practices that aim to monitor and regulate attention, perception, emotion and homeostasis (e.g., breathing rate) (Fox and Cahn, forthcoming; Tang et al., 2015 ).
minimum standard: the original researcher can repeat an analysis on original data
sandve2013-ten-simple-rules-reproducible-computational-research
As a minimal requirement, you should at least be able to reproduce the results yourself. This would satisfy the most basic requirements of sound research, allowing any substantial future questioning of the research to be met with a precise explanation. Although it may sound like a very weak requirement, even this level of reproducibility will often require a certain level of care in order to be me
not defined in this paper's own words; the ability to recreate scientific computational output
wilson2014-best-practices-scientific-computing
In order to maximize reproducibility, everything needed to re-create the output should be recorded automatically in a format that other programs can read. (Borrowing a term from archaeology and forensics, this is often called the provenance of data.) There have been some initiatives to automate the collection of this information, and standardize its format [43] , but it is already possible to reco
not defined in this paper's own words; the capacity for scientific studies to be repeated, improved, and checked
johnson2016-mimic-iii-critical-care-database
Despite this advance, interoperability of digital systems remains an open issue, leading to challenges in data integration. As a result, the potential that hospital data offers in terms of understanding and improving care is yet to be fully realized. In parallel, the scientific research community is increasingly coming under criticism for the lack of reproducibility of studies 2 .
not defined in this paper's own words; the capacity to verify or reproduce research evidence and claims
munafo2017-manifesto-reproducible-science
Here we propose a series of measures that we believe will improve research efficiency and robustness of scientific findings by directly targeting specific threats to reproducible science. We argue for the adoption, evaluation and ongoing improvement of these measures to optimize the pace and efficiency of knowledge accumulation. The measures are organized into the following categories 16 : methods
not defined in this paper's own words; the ability to replay, verify, refine, and extend a computational analysis
gentleman2004-bioconductor-open-software-development
We would like to address the reproducibility of published work in CBB. Reproducibility is important in its own right, and is the standard for scientific discovery. Reproducibility is an important step in the process of incremental improvement or refinement. In most areas of science researchers continually improve and extend the results of others but for scientific computation this is generally the
peer standard: others have a practical possibility of reproducing results
sandve2013-ten-simple-rules-reproducible-computational-research
With this basic level of reproducibility in place, there is much more that can be wished for. An obvious extension is to go from a level where you can reproduce results in case of a critical situation to a level where you can practically and routinely reuse your previous work and increase your productivity. A second extension is to ensure that peers have a practical possibility of reproducing your
AS REDEFINED HERE, with the ordinary reading explicitly refused: NOT that another researcher would obtain the same result, but that random and systematic error are minimised against the total observed variability
koelmans2019-microplastics-in-freshwaters-and-d
Reproducibility does not imply that another researcher would obtain the same result, which is due to the variability in conditions inherent to nature. Reproducibility in the context of analytical chemistry refers to minimizing the contribution of random or systematic error to the total observed variability.
describes whether an AI experiment exhibits the same behaviour when repeated under the same conditions
koshiyama2024-algorithm-auditing-ai-risks
publication of portable source code with data so algorithmic claims can be replayed and checked
gentleman2004-bioconductor-open-software-development
Experimental protocols in molecular biology are fully published lists of ingredients and algorithms for creating specific substances or processes. Accuracy of an experimental claim can be checked by complete obedience to the protocol. This standard should be adopted for algorithmic work in CBB. Portable source code should accompany each published analysis, coupled with the data on which the analys
the ability to repeat and improve clinical studies using openly available underlying data
johnson2016-mimic-iii-critical-care-database
Here we report the release of the MIMIC-III database, an update to the widely-used MIMIC-II database (Data Citation 1). MIMIC-III integrates deidentified, comprehensive clinical data of patients admitted to the Beth Israel Deaconess Medical Center in Boston, Massachusetts, and makes it widely accessible to researchers internationally under a data use agreement ( Fig. 1 ). The open nature of the da
not defined in this paper's own words; interwoven experience of fear, risk, and safety
yuill2020-womens-decision-making-informed-choice-birth
Fear, risk and safety appear to be part and parcel of uncertainty. Fear about childbirth is strongly connected to the unknown, whether it concerns pain levels, interventions or entire approaches to maternity care, as opposed to concrete calculations of risk, displaying how uncertainty is remains enmeshed with ‘being in control’.
not defined in this paper's own words; structural and source uncertainty in gridded climate data
abatzoglou2018-terraclimate-high-resolution-global-dataset
Uncertainty in observational gridded climate datasets that use station based data can arise from a variety of sources ranging from procedural choices for interpolating and extrapolating data spatially, to changes in data availability through time, to climate inhomogeneities that lead to structural uncertainty in climate datasets 46 , 47 . TerraClimate uses three different datasets, each of which c
not defined in this paper's own words; quality-related range attached to reconstructed time series
pauly2016-catch-reconstructions-global-marine-fisheries
Our reconstructed catch data, which combines the data reported to FAO with estimates of unreported catches (that is, reconstructed data are ‘reported FAO data+unreported catches') include estimates of uncertainty ( Fig. 1 ) associated with each national reconstruction. Note that many reconstructions are associated with high uncertainty, especially for earlier decades, for sectors such as subsisten
the spread of projected outcomes across modelling choices and input data
thuiller2019-uncertainty-global-biodiversity-scenarios
We demonstrate the overwhelming influence of SDMs and RCPs on future biodiversity projections, followed by dispersal strategies and GCMs.
fear, risk, and safety concerns about unknown aspects of pregnancy, birth, and care
yuill2020-womens-decision-making-informed-choice-birth
‘Uncertainty’, along with the following two analytical themes, encompasses several different experiences that are related to mothers’ concerns about the unknown and the course of pregnancy, childbirth and maternity care, all of which shape women’s decision-making and the options they ultimately pursue. Uncertainty about the unknowns of pregnancy and childbirth is most prominent among first-time mo
graded and cross-cutting construct membership rather than categorical assignment
cane2012-theoretical-domains-behaviour-change
To identify if any constructs should be considered for multiple allocation to domains the membership values from the Fuzzy Cluster Analysis were examined. This revealed that the majority of constructs (74/112) were strongly associated with only one cluster ( i.e. , showed membership values over 80% to one specific cluster, see Additional file 5 ). A further 32 constructs showed moderately high ass
situations where relevant possibilities or probabilities are unknown and optimal behavior cannot be fixed
hausman2015-evidence-libertarian-paternalism
The term risk refers to situations where all alternatives, consequences, and probabilities are known for certain, as in the Bayesian textbook problems mentioned above or when playing the roulette wheel in a casino. Here, one can calculate the expected loss in the long run, and no heuristics are needed. The term uncertainty refers to real-world situations where not everything is known, where surpri
a method for the conceptualization and evolution of a concept in its context
sadathoseini2023-healing-cross-cultural-concept
combines both theoretical analysis and experimental observations
kalantari2024-conscience-based-nursing-care
a way to create, develop and expand concepts, especially in nursing, and consists of three phases, theory (literature review), fieldwork and the final analysis
azizi2023-helplessness-nurses-covid
ML predicts the wavefunction, and quantum chemistry derives every property from it
schutt2019-machine-learning-molecular-wavefunctions
Here we present a deep learning framework for the prediction of the quantum mechanical wavefunction in a local basis of atomic orbitals from which all other ground-state properties can be derived.
combines the inductive and deductive approaches and integrates theoretical analysis with empirical investigations
jang2020-staff-family-partnership-long-term-care
reflects social and cultural characteristics through participants’ experiences and translates highly abstract and ambiguous concepts into practice
ahn2025-dignity-in-care-older-patients
intrinsic causal difference available to the system itself
oizumi2014-iit-phenomenology-mechanisms-consciousness
In IIT, information is meant to capture the “differences that make a difference” from the perspective of the system itself – and is therefore both causal and intrinsic.
a cue that resolves outcome uncertainty without changing contingency
mellers2016-savouring-prediction-error-choice
When people anticipate possible future outcomes, they often prefer their fate to be revealed in advance by a predictive cue, even when this cue does not influence outcome contingency. This is usually called ‘observing’, or ‘information-seeking’, behavior.
extended: irreducible spatially extended units handled by consciousness
forti2025-what-is-consciousness-and-what-it-is-for-an
Extending in a certain way is not only a property related to how objects appear. As it implies knowledge, it is a property that can be related to conscious function, hence to the handling of information ( Lycan, 1996 ; Mangan, 1998 ; Earl, 2014 ). I assume that, in order to know how an object extends, consciousness must handle extended information. Extended information is characterized by the fact
not defined in this paper's own words; percent explained variance about which color was shown
Hahn2021-working-memory-capacity-of-crows-and-monkeys
Parallel to the behavioral results and in line with the results from monkeys, we found a strong effect of ipsilateral load on the information maintenance, as there was a sharp drop in information when the load increased from one item to two items ( Figure 4A , blue and yellow curves). The addition of a third item only slightly decreased the maintained information further ( Figure 4A , red curve).
point-like: computational units handled by non-conscious systems
forti2025-what-is-consciousness-and-what-it-is-for-an
The fundamental difference between non-conscious and conscious processes is that the former handle Point-Like Information, while the latter handle Extended Information. If we accept this dichotomy, then all information-related systems should be distinguished based on whether they are extended or point-like, depending on whether they are conscious or NC systems, respectively. Consciousness is diffe
structured ambient energy rather than a transmitted signal
baggs2020-ecological-psychology-enactivism-action
In contrast, Ecological optics focuses on the level of the whole organism living and acting in its natural surround, and the structured arrays (in light, sound, pressure) that are consequences of the structure of the surround. These arrays are what perceptual systems are sensitive too, which allow the organism to detect, coordinate with, and change its surround as the organism goes through its lif
the pursuit of combined and inter-related human, animal and environmental health
hinchliffe2018-healthy-publics-enabling-cultures
not defined in this paper's own words; an approach linking animal, human and environmental health
horecka2022-animal-sheltering-research
Access to care is an aspect of the One Health approach to considering animal welfare due to the zoonotic potential of various diseases that can find reservoir in companion animals ( 90 ).
a global strategy highlighting the need for an approach that is holistic and transdisciplinary and incorporates multisector expertise in dealing with the health of mankind, animals, and ecosystems
destoumieuxgarzon2018-one-health-concept
in practice narrowed to zoonoses, with the environment as mere backdrop
destoumieuxgarzon2018-one-health-concept
Thus, a quick review of scientific investigations claiming to adhere to the “One Health” concept clearly reveals that they only mention the environment and its biotic and abiotic components as the scene of transmission, often reduced to global planetary changes or the Anthropocene.
still to take in plant health as a full component
destoumieuxgarzon2018-one-health-concept
The issue of plant health as a full component of “One Health” concept is a challenge to be urgently resolved ( 119 ).
understanding drivers of AMR as located within and between agricultural, human health and environmental domains
chandler2019-antimicrobial-resistance-infrastructure
concerned with the effective and ethical understanding and use of digital technologies
sun2022-digital-resilience-school-education
the combined ability of individuals to effectively, critically, creatively, and responsibly use digital technologies
li2026-artificial-intelligence-literacy-nursing
AI literacy intersects with concepts such as digital literacy and information literacy in the field of nursing and health education, but each has a different focus and connotative boundaries
the technological skills needed to use digital technologies effectively and critical thinking skills to evaluate digital health information
cho2025-digital-literacy-dementia-caregivers
digital literacy refers to a broad set of competences around the use of digital media, computers, and information and communication technologies (ITC), being understood as part of other forms of literacy, such as computer, Internet, media, and informational literacy [ 35 ]
polancolevican2022-social-media-literacy-concept
the cognitive and technical skills required to successfully navigate DHTs
razaq2025-digital-health-equity-concept
not defined in this paper's own words; aggregation of findings to establish general truths
yuill2020-womens-decision-making-informed-choice-birth
As the review encompassed published qualitative data, we employed a meta-synthesis approach to explore the relevant literature, which is anchored around “bringing together and breaking down of findings, examining them, discovering essential features and, in some way, combining phenomena into a transformed whole”.[[ 21 ] p314] This new interpretation of, or ‘going beyond’ [ 22 ] research is one of
not defined in this paper's own words; statistical synthesis of study effects
page2021-prisma-systematic-review-reporting-guideline
Many innovations in the conduct of systematic reviews have occurred since publication of the PRISMA 2009 statement. For example, technological advances have enabled the use of natural language processing and machine learning to identify relevant evidence, 22 23 24 methods have been proposed to synthesise and present findings when meta-analysis is not possible or appropriate, 25 26 27 and new metho
Meta-analysis refers to the use of statistical techniques in a systematic review to integrate the results of included studies.
moher2009-prisma
Statistical methods (meta-analysis) may or may not be used to analyze and summarize the results of the included studies
moher2009-prisma
not defined in this paper's own words; pooling many studies to test a shared question
brussow2020-gut-dysbiosis-concept
A meta‐analysis can increase the statistical power of many small studies by detecting true signals against a background of false positives.
characteristics of a concept
pryor2026-adult-social-care-nursing-concept
the components or characteristics of a concept
al-asfoor2024-health-system-resilience
the describing characteristics of the concept
menassa2023-healthy-ageing-concepts-definitions
characteristics of the concept that make it possible to identify situations that can be characterised under the concept and constitute the essential definition of a concept
smith2020-rapid-implementation
features of a concept
rahimi2024-saturation-qualitative-research
the fundamental features that characterise a given concept
lu2025-patient-public-involvement-research
The attributes constitute the real definition of the concept, which can be represented by situations or words that adequately characterize the concept [ 15 ]
lima2023-resilience-older-people
critical features (signs and symptoms) of a concept, which appears again and yet again during the analysis of the concept
nukpezah2020-happiness-children-long-term-illness
precise terms that can be used to clarify a concept, aiding in differentiating it from other similar concepts
al-hamad2024-refugee-cohabitation-host-families
the characteristics that repeatedly appear in the literature as central to a concept
muswede2026-political-astuteness-nurse-leadership
the constituent elements or features that comprise the construct of hope
antunes2023-hope-in-nursing-care
“qualities or characteristics that are frequently associated with a concept, and providing additional insight into its meaning”
konlan2024-clinical-readiness-nursing-students
A concept analysis is a process to guide the exploration of a concept that may be vague or ambiguous.
hughes2018-public-involvement-concept-analysis
a systematic process of developing, clarifying, and refining the phenomenon under analysis
sun2022-psychological-birth-trauma
a systematic analysis process aimed at developing, clarifying, and refining a specific phenomenon
hou2025-autonomy-support-telehealth
a systematic process aimed at exploring the structure and function of a given concept by closely examining its fundamental components
jeong2025-vicarious-resilience-nurses
a process of examining the main elements of the concept that the researcher wants to better understand the concept by reviewing its components
zeydani2023-community-based-nursing
a systematic method for deconstructing a concept to enhance understanding and develop a rigorous definition that facilitates its measurement and empirical application
zhang2026-digital-social-prescribing-concept
a valuable approach used in nursing to bring clarity to concepts that are often used with ambiguity
antunes2023-hope-in-nursing-care
used to examine the basic elements of a concept to investigate its structure and function
sun2022-digital-resilience-school-education
a formal, rigorous process by which an abstract concept is explored, clarified, validated, defined, and differentiated from similar concepts to inform theory development and enhance communication
shin2020-community-health-outreach
a means for establishing conceptual clarity about a phenomenon
al-asfoor2024-health-system-resilience
a method for clarifying foundational ideas
smith2020-rapid-implementation
a useful framework to provide clarification for novel or ambiguous concepts and develop conceptual definitions to aid in health practice and policy
rusi2024-commercialization-human-milk-concept
approach by which concepts that are of interest to a discipline are examined in order to clarify their characteristics or attributes
hallyburton2022-diagnostic-overshadowing
the essential cluster of characteristics of a concept that consistently and frequently appear in the literature
ananzeh2026-moral-distress-family-caregivers
demonstrate the cluster of characteristics that are most frequently associated with the concept undergoing analysis
timmins2024-moral-distress-student-nurses
the characteristics of a concept that appear repeatedly in the literature and are consistently present when the concept occurs
abujaber2024-nursing-privilege
critical characteristics that help differentiate related concepts and clarify their meaning
carvalho2022-positive-mental-health-literacy
essential characteristics that frequently emerge in the literature and are consistently present when a concept manifests
shaban2024-eco-conscious-nursing
those characteristics, which are consistently associated with the concept and that act to differentiate it from other similar or related ones
balaam2017-migrant-women-pregnancy
a list of characteristics that “help you and others name the occurrence of a specific phenomenon as differentiated from another similar or related one”
shin2020-community-health-outreach
encompass the core of a concept and allow for easy identification
xiao2024-filial-piety-caregiving
an imbalance in the composition and metabolic capacity of our microbiota
wilkins2019-dysbiosis-definition
not defined in this paper's own words; altered microbial composition with cascading host consequences
berg2020-microbiome-definition-re-visited-o
Historically, the field of microbiome research has emerged from environmental microbiome research (microbial ecology) and provides an interdisciplinary platform for many fields, e.g., agriculture, food science, biotechnology, bioeconomy, mathematics (informatics, statistics, modeling), plant pathology, and especially human medicine. The new field has already delivered novel and important concepts
an altered microbial composition that disrupts the microbiota's physiological functions; the direction of causation is named as an open question in this paper's own abstract
thursby2017-introduction-to-the-human-gut-micr
However, there is potential for these mechanisms to be disrupted as a result of an altered microbial composition, known as dysbiosis.
a catchall definition lacking scientific value, after Hooks and O'Malley
brussow2020-gut-dysbiosis-concept
This vague definition led, in the view of these authors, to a catchall definition lacking scientific value, which has hampered the microbiome field to progress from an association‐focused to an explanatory science.
a pre-scientific notion of microbial imbalance, after Olesen and Alm
brussow2020-gut-dysbiosis-concept
In a short comment, ‘Dysbiosis is not an answer’, Olesen and Alm ( 2016 ) dismissed dysbiosis as a major organizing concept in microbiome science, arguing that it is based on pre‐scientific thoughts of microbial imbalances and resembling somewhat the humoural theory of human health.
any change in composition of resident commensal communities relative to the community found in healthy individuals
brussow2020-gut-dysbiosis-concept
not defined in this paper's own words; departure from a healthy composition, associated with intestinal AND extra-intestinal disease, and proposed as a biomarker while its direction of causation is unsettled
rinninella2019-what-is-the-healthy-gut-microbiota
Indeed, dysbiosis of gut microbiota is associated not only with intestinal disorders but also with numerous extra-intestinal diseases such as metabolic and neurological disorders.
not defined in this paper's own words; care that attends to the patient as a whole person with their own values and preferences
larsson2023-feeling-safe-perioperatively
Thus, person-centred care could make patients feel a greater sense of participation, control and presence, that is, feeling safe in a perioperative context
not defined in this paper's own words; care that attends to the whole person, prevention included
hickmann2022-patient-engagement-empowerment-terms
Person-centred care would, therefore, include the entire topic of prevention
not defined in this paper's own words; a way of giving nursing care built around the whole, unique person and a balance of power
byrne2020-person-centred-care-nursing-definition
The aims of this literature review were to better understand the current literature about person-centred care (PCC) and identify a clear definition of the term PCC relevant to nursing practice
based on a philosophy of care that promotes personal choice and autonomy for people in receipt of care
ostaszkiewicz2020-dignity-protective-continence-care
the recognition and engagement with the person’s values and preferences, which are used to guide care
egan2021-transitioning-long-term-care-id
In this article, we have chosen to use the term “person‐centred care” (referred to as PCC), as opposed to patient‐centred care, in agreement with Ekman et al 's distinction between patient‐centred care and PCC, by which PCC refrains from reducing the person to just their symptoms and/or disease.
santana2017-how-to-practice-person-centred-care-a
a holistic approach to care that is respectful and individualised, that includes negotiation of care, choice and where persons receiving care are empowered to be involved in health decisions at the level they choose
carter2024-child-centred-care-concept
not defined in this paper's own words; patient-centered care
kehyayan2025-value-based-healthcare-concept
applying them through informed leadership strategies is crucial for achieving transformative, patient-centered care (PCC)
participants, concept and context
laukka2022-leadership-digital-health
participants, concept, and context
ehmann2021-work-related-health-literacy-concept
population, concept, and context
konlan2024-clinical-readiness-nursing-students
patient-centered care
boeykens2022-goal-oriented-care
person-centred care
byrne2020-person-centred-care-nursing-definition, carter2024-child-centred-care-concept
not defined in this paper's own words; standard deviation over mean, here of interspike intervals
christensen2021-perineuronal-nets-grid-cell-network
This was accompanied by a reduction in spiking variability, measured by the coefficient of variation (CV) of interspike intervals (ISI) (Fig. 2 h and Supplementary Fig. 5 ).
standard deviation divided by the mean
horvath2013-dna-methylation-age-human-tissues
yield s.d. divided by mean yield per political unit
ray2015-climate-variation-crop-yield
In general the coefficient of variation, or yield variability normalized by mean yields ( Fig. 1 ), has been lower in the top crop production regions of the world on account of their higher yields ( Supplementary Fig. 1 ) and conversely higher in the areas of lower yields and of less consequence to global crop production but exceptions such as the Australian wheat belt exist.
not defined in this paper's own words; the measure the paper uses for total uncertainty across the ensemble
tabari2020-climate-flood-extreme-precipitation
The total uncertainty of flood changes expressed as the coefficient of variation (CV) of the changes across the full ensemble is decomposed into hazard quantification method, GCM and IM uncertainties
not defined in this paper's own words; relative dispersion of read counts among samples
elshire2011-genotyping-by-sequencing-high-diversity-species
The six lanes of the maize IBM population sequencing run yielded 120,438,739 GBS reads that contained the barcode and the Ape KI cut-site (or 20,073,123 reads per lane). On average, 436,372 reads were produced per DNA sample and 95% of samples generated at least 125,000 reads. Evenness of sample representation among the maize IBM RILs was acceptable but not optimal. In our best lane from the IBM f
broad in Recital 159 (fundamental, applied, privately funded research and more)
becker2024-gdpr-purpose-definition
Within the legal framework established by the GDPR, ‘scientific research’ is an important concept whose exact meaning can differ across contexts. Recital 159 of the GDPR frames the concept in a broad manner:
not defined in this paper's own words; research increasingly dependent on custom software and computation
wilson2014-best-practices-scientific-computing
Software is as important to modern scientific research as telescopes and test tubes. From groups that work exclusively on computational problems, to traditional laboratory and field scientists, more and more of the daily operation of science revolves around developing new algorithms, managing and analyzing the large amounts of data that are generated in single research projects, combining disparat
not defined in this paper's own words; the research process whose reliability, efficiency, and credibility the manifesto seeks to improve
munafo2017-manifesto-reproducible-science
Improving the reliability and efficiency of scientific research will increase the credibility of the published scientific literature and accelerate discovery. Here we argue for the adoption of measures to optimize key elements of the scientific process: methods, reporting and dissemination, reproducibility, evaluation and incentives. There is some evidence from both simulations and empirical studi
a research project set up in accordance with relevant sector related methodological and ethical standards, in conformity with good practice
becker2024-gdpr-purpose-definition
narrow, a particular research project pursued by the controller
becker2024-gdpr-purpose-definition
However, depending on the context, ‘scientific research’ can also have a narrower meaning, referring to a particular research project pursued by the controller.
refers to the social ties between persons in networks
vernooij-dassen2022-social-health-framework
Structure includes PCC domains related to the health‐care system or the context in which care is delivered and provides the foundation for PCC – the necessary materials, health‐care resources and organizational characteristics.
santana2017-how-to-practice-person-centred-care-a
a particular changing manifestation of a system's interacting components
van-der-schijff2018-4e-music-pedagogy-self-organization
As Mingers [ 37 ] notes, it is important to make a clear distinction between the concept of ‘structure’ and the concept of ‘organization’. Maturana defines the latter as the sets of functional relations that determines the system as a unity, while the former is understood as one of the possible manifestations of its interactive components—“thus all cells have the same autopoietic organization, but
infer source population structure and ancestry proportions for sampled genomic data
walton2025-panmictic-population-concept
material infrastructures, bureaucratic frameworks, and assumptions in language and attitude that shape biomedical interactions
metzl2014-structural-competency-stigma-inequality
Structure is of course a term with a complex theoretical past, from Marx to Giddens to Levi-Straus. In our formulation, structure implies the buildings, energy networks, water, sewage, food and waste distribution systems, highways, airline, train and road complexes, and electronic communications systems that are concomitantly local and global, and that function as central arteries in some locales
not defined in this paper's own words; arid, semi-arid and dry sub-humid lands
burrell2020-drylands-desertification-climate-change
Drylands cover 41% of the earth’s land surface and include 45% of the world’s agricultural land.
lands with an Aridity Index below 0.65
hassani2021-soil-salinization-climate
Drylands, including hyper-arid, arid, semi-arid, and dry sub-humid lands, are characterized by a multi-annual Aridity Index (AI) of less than 0.65 mm mm −1 , computed as the ratio of total precipitation to potential evapotranspiration 36 , 37 .
not defined in this paper's own words; arid and semi-arid regions
liu2020-soil-moisture-dryness-stress-ecosystem
As SM stress is strongest in drylands, the projected expansion of drylands 33 is likely to increase the influence of SM on the future global carbon cycle.
areas with aridity level above 0.35
hu2021-aridity-biodiversity-soil-multifunctionality
In last decades, catalytic nanomaterials with natural enzyme-like activities (termed as nanozymes) have been developed as emerging artificial enzymes.
yao2018-ros-scavenging-mn-3-o-4-nanozymes
first coined for enzymes combined with gold particles, and now used for nanomaterials with enzyme-like activity
lou-franco2020-gold-nanozymes-concept
These discoveries led to the term “nanozyme” being coined in the early 2000s by Paolo Scrimin’s group [ 76 ], in analogy to the nomenclature of catalytic polymers (“synzymes”) reported by Klotz et al. [ 77 ]. This term initially referred to a combination of enzymes and AuNPs, which would offer multiple possibilities for diagnostic assay development [ 78 ].
Thus, the term “Nanozyme” was coined to describe the properties of this emerging generation of enzyme mimetics or artificial enzymes 7 .
fan2018-in-vivo-guiding-nitrogen-doped-carbon-nanozyme
Nanozymes that integrate the functions of both nature enzymes and nanomaterials have sparked increasing interest due to their higher stability against stringent conditions, controlled synthesis at low cost and tunable catalytic activities 18 – 20 .
wang2018-biomimetic-nanoflowers-by-self-assembly-of-nanozymes
An ontology provides a conceptualization of a domain of knowledge, allowing communication between researchers and makes the information readable and ‘understandable’ for computers ( 5 ).
kohler2013-the-human-phenotype-ontology-project-linking-molecular
not defined in this paper's own words; formal relationship definition for terms in a domain
wieczorek2012-darwin-core-evolving-community-biodiversity-data-standard
Though the Darwin Core is defined in an RDF document, integration of biodiversity data in the semantic web is in its early stages. One of the major challenges for Darwin Core in the semantic web context is the lack of a well-defined ontology - a formal definition of relationships between terms in a defined domain. An ontology would define the relationships between concepts such as biological entit
Taxonomies are simplistic schemes that help in the hierarchical classification of concepts or objects [ 1 ]. They are usually limited to a specific domain and to a single relationship type connecting one node to another. Ontologies share the hierarchical structure of taxonomies. In contrast to taxonomies, however, they often have multiple relationship types and are really designed to provide a formal naming of the types, properties and interrelationships of entities or concepts in a specific discipline, domain or field of study [ 2 , 3 ].
djoumbou-feunang2016-classyfire-automated-chemical-clas
not merely a collection of predefined terms that are used to describe data
eilbeck2005-sequence-ontology
preparation of inanimate microorganisms and/or their components that confers a health benefit on the host
vinderola2022-postbiotics-concept
a preparation of inanimate microorganisms and/or their components that confers a health benefit on the host
salminen2021-the-international-scientific-association-of-probiotics-and
The panel defined a postbiotic as a “preparation of inanimate microorganisms and/or their components that confers a health benefit on the host”.
not defined in this paper; named only as one of the terms in the expanding biotics category
swanson2020-isapp-consensus-statement-synbiotics
In addition, the expansion of the entire ‘–biotics’ category, including terms such as postbiotic 10 and pharmabiotic 11 , almost certainly further contributes to confusion.
named from the Greek for after and life, for microbes no longer alive
vinderola2022-postbiotics-concept
Postbiotic is a term derived from the Greek for ‘post’, meaning after, and ‘bios’, meaning life. Further, the ‘biotic’ family of terms (probiotics, prebiotics, synbiotics and postbiotics) coalesces around microbes (or their substrates) ( Table 1 ). Therefore, the term postbiotic appropriately refers to substances derived after the microorganisms are no longer alive, or, in other words, inanimate,
continuous top-down prediction updated by bottom-up prediction error
mencke2019-atonal-music-uncertainty-pleasure
These top–down predictions continuously encounter bottom-up sensory input and in the event that the model has generated an incorrect prediction, a PE signal is used to update the model ( Kopell et al., 2000 ; Fontolan et al., 2014 ).
hierarchical message passing that compares top-down predictions with bottom-up error
williams2018-predictive-processing-representation-wars
Predictive coding then characterises the nature of message-passing throughout this hierarchical generative model. Traditional approaches in perceptual psychology and neuroscience model perception as a process of bottom-up feature detection or evidence accumulation (e.g. Marr 2010 ). Roughly, perceptual systems detect increasingly sophisticated features of the environment as information passes from
Theoretically, predictive coding suggests that the brain is constantly making efforts to ‘fit’ internal models in perceiving through inferring the incoming sensory input. The discrepancies between the actual sensory data and the predicted sensory data (‘error’) are used to refine the model in an iterative process until the model optimized
Wang2018-frequency-selectivity-of-echo-responses-in-t
not defined in this paper's own words; hierarchical sensory prediction and error-driven model revision
pearce2018-statistical-learning-probabilistic-prediction-music
Research has established statistical learning and predictive processing as important mechanisms in many areas of cognitive science and cognitive neuroscience, 15 , 16 , 17 including language processing, 13 , 18 , 19 , 20 , 21 visual perception, 22 , 23 , 24 , 25 and motor sequencing. 26 In particular, predictive coding 15 , 17 , 27 , 28 , 29 is a general theory of the neural and cognitive processe
not defined in this paper's own words; persistent incorrect extrapolation about brain and learning
ruiz2018-educational-psychology-neuroscience-literacy-neuromyths
Attempts to bridge between neuroscience and education have been plagued by the recalcitrant presence of neuromyths. These are widely believed–but incorrect–statements about brain structure, function, and development. Common examples include overemphasizing the importance of hemisphere dominance and the existence of critical periods during early development [ 8 ]. Some neuromyths have their origins
not defined in this paper's own words; false educational claim derived from distorted or misapplied brain research
ruiz-martin2021-persistence-neuromyths-education
From an educational approach, a neuromyth was described as “a misconception generated by a misunderstanding, a misreading, or a misquoting of facts scientifically established (by brain research) to make a case for the use of brain research in education and other contexts” (OECD, 2002 ).
any incorrect statement included in the neuroscience survey
ruiz2018-educational-psychology-neuroscience-literacy-neuromyths
A potential limitation of defining neuromyths to be the most recalcitrant incorrect statements is that this may have stacked the deck against finding an effect of taking an educational psychology course. We therefore considered a broader definition of a neuromyth as any incorrect statement in the survey, and computed the number of the 31 incorrect items that were answered incorrectly (i.e., receiv
not defined in this paper's own words; incorrect beliefs about brain function and education
thomas2018-educational-neuroscience-progress-prospects
Educational neuroscience has received diverse critiques, challenges and sources of support. Some of these do not pertain to the field of science itself. For example, there is a great deal of research into so‐called neuromyths . Neuromyths are misconceptions about the brain and education among teachers and the public that are either not yet supported by the data or actively contradicted by existing
a critique of MI theory whose popularity may be waning
attwood2022-multiple-intelligences-semantics
Although there has been a substantial phase of popularity in the critique of “neuromyths” prompted, in part, by critical studies of MI theory during the 2000s and 2010s, this appears to be waning and perhaps partially reversing, at least temporarily ( Gardner, 2020 ; Rousseau, 2021 ).
an incorrect item endorsed by at least half of either group at pre-test
ruiz2018-educational-psychology-neuroscience-literacy-neuromyths
The second research question is whether taking an educational psychology course is associated with decreased belief in neuromyths. To address this question, we defined neuromyths in two ways. The first definition was operational, as incorrect items that were answered incorrectly (i.e., received a “yes” response) by at least 50% of the experimental or control participants at pre-test. Note that lar
not defined in this paper's own words; a test hypothesis assigning a null value such as zero to the targeted effect
greenland2016-statistical-tests-p-values-confidence-intervals-power
In most applications of statistical testing, one assumption in the model is a hypothesis that a particular effect has a specific size, and has been targeted for statistical analysis. (For simplicity, we use the word “effect” when “association or effect” would arguably be better in allowing for noncausal studies such as most surveys.) This targeted assumption is called the study hypothesis or test
The most common approach in the comparative analysis of transcriptomics data is to test the null hypothesis that the logarithmic fold change (LFC) between treatment and control for a gene’s expression is exactly zero, i.e., that the gene is not at all affected by the treatment.
love2014-deseq2
interacting lineages have not evolved exceptional hologenome-selected traits
moran2015-hologenome-helpful-hollow
the variable describing the ordering of cells along inferred paths
luecken2019-single-cell-rnaseq-best-practices
The ordering of cells along these paths is described by a pseudotime variable.
not defined in this paper's own words; the axis along which “cells’ approximate temporal progressions along inferred lineages” are reconstructed
reagor2023-pseudotime-lagged-causality
Many algorithms exploit these cell-to-cell differences to infer dynamic trajectories and reconstruct cells’ approximate temporal progressions along inferred lineages in pseudotime
`a one-dimensional variable representing each cell's transcriptional progression toward the terminal state`. It is a coordinate along a fitted curve, not an estimate of elapsed time, and a cell in two lineages gets TWO of them
street2018-slingshot-cell-lineage-and-pseudot
For each lineage, identification of pseudotimes , i.e., a one-dimensional variable representing each cell’s transcriptional progression toward the terminal state. This is achieved by a method which extends principal curves
not defined in this paper's own words; concentrated consumption of preferred sources or topics
bakshy2020-selective-exposure-facebook-news-diet
Selective exposure relates to the tendency of users to concentrate their activity on specific topics or pages while ignoring other ones. For instance, a user who focuses his/her activity on a single topic (or page) would display higher selective exposure than a user who interacts with multiple topics. Focusing on a single topic rather than on different ones entails a heterogeneity in the distribut
inequality in the distribution of user activity
bakshy2020-selective-exposure-facebook-news-diet
Therefore, a good proxy for selective exposure is a measure that quantifies heterogeneity in the distribution of users’ activity across different elements; namely, topics or pages.
with confirmation bias, the tendency to seek information adhering to preexisting opinions - offered as the explanation for how echo chambers emerge
cinelli2021-the-echo-chamber-effect-on-social
Selective exposure and confirmation bias (i.e., the tendency to seek information adhering to preexisting opinions) may explain the emergence of echo chambers on social media.
one begins with a model trained on data from one task and then retrains the model on data from a different, but related task
smith2019-neural-network-potential-transfer-learning
Transfer learning is a useful approach to build powerful classification network using few data, by fine-tuning the parameters of a network pretrained on a large dataset, such as ImageNet [ 26 ].
wang2017-automatic-image-based-plant-disease-severity-estimation
not defined in this paper's own words in this sentence
clark2024-interactive-machine-learning-marine-images
Transfer learning aided the production of two of the models, increasing analysis efficiency from 6 to 16 times faster than manual annotation for time-lapse images.
not defined in this paper's own words; initialization from pretrained network weights
pereira2022-sleap-multi-animal-pose-tracking
Other popular tools for animal pose estimation, however, make use of standard neural network architectures for which pretrained weights are available to enable transfer learning, which is thought to improve performance for datasets that have few labels 5 , 22 . SLEAP allows for the configuration of these types of models by using them as the backbone for the encoder portion of the model and connect
not defined in this paper's own words; pretraining on a related task or climate simulation before fine-tuning observations
rasp2020-weatherbench
Should overfitting be a problem, one could try transfer learning. In transfer learning, the network is pretrained on a similar task or dataset, for example, climate model simulations, and then finetuned on the actual data. This is common practice in computer vision and has been successfully applied to seasonal ENSO forecasting
not defined in this paper's own words; reusing a network trained on one data set for another task
lao2017-deep-learning-radiomics-glioblastoma
In computer vision domain, transfer learning and fine tuning are often used to solve the problem of a small data set
a method used in other fields where DL has been applied to reduce the amount of training data needed for effective models
forenzo2024-deep-learning-bci-continuous-tracking
Definitions of TL According to Matt, he defines TL, a category under ML is when the reuse of pre-existing models to solve current challenges.
hosna2022-transfer-learning-a-friendly-introduction
The alternative way to address the issue of data bias is to use transfer learning where the objective is to improve learning a new task through the transfer of knowledge from a related task that has already been learned 115 .
su2020-deep-learning-in-mental-health-outcome-research
a technique enhancing neural networks' ability to extrapolate between systems
subel2023-transfer-learning-turbulence-physics
Transfer learning (TL) is a technique that enhances NNs’ capabilities, e.g. enabling them to extrapolate from one system to another.
a criterion for discontinuing data collection and/or analysis in qualitative research
rahimi2024-saturation-qualitative-research
not defined in this paper's own words; a criterion for discontinuing data collection and/or analysis - defined variously across the literature and sometimes not defined at all
saunders2017-saturation-qualitative-research-exploring-conceptualization
However, despite having apparently attained something of the status of orthodoxy, saturation is defined within the literature in varying ways—or is sometimes undefined— and raises a number of problematic conceptual and methodological issues (Dey 1999; Bowen 2008; O’Reilly and Parker 2013).
not defined in this paper's own words; self-inhibition produced by recent topic consumption
lorenz-spreen2019-accelerating-collective-attention
The exponential decay with rate α accounts for finite memory of the public, as recently observed 13 . Content regarding the topic i that has been produced in the recent past is consumed and contributes to its boringness. Occurrences in the distant past do not contribute, allowing for the reoccurrence of topics. The quantity K accounts for the carrying capacity from the classical population growth
Also writing from a grounded theory standpoint, Urquhart (2013: p. 194) defines saturation as: ‘the point in coding when you find that no new codes occur in the data. There are mounting instances of the same codes, but no new ones’, whilst Given (2016: p. 135) considers saturation as the point at which ‘additional data do not lead to any new emergent themes’. A similar position regarding the (non)emergence of new codes or themes has been taken by others (e.g. Birks and Mills 2015; Olshansky 2015).3 These definitions show a change of emphasis, and suggest a second model of saturation. Whilst the focus remains at the level of analysis, the decision to be made appears to relate to the emergence of new codes or themes, rather than the degree of development of those already identified. Moreover, Urqhart (2013) and Birks and Mills (2015) relate saturation primarily to the termination of analysis, rather than to the collection of new data.
saunders2017-saturation-qualitative-research-exploring-conceptualization
Such conditions, called saturation, occur when the concentrations of certain cations and anions in solution reach a maximum limit value (solubility).
sambo2019-hydroponic-solutions-for-soilless-production-systems-issues
The criterion for judging when to stop sampling the different groups pertinent to a category is the category’s theoretical saturation. Saturation means that no additional data are being found whereby the sociologist can develop properties of the category. As he sees similar instances over and over again, the researcher becomes empirically confident that a category is saturated. He goes out of his way to look for groups that stretch diversity of data as far as possible, just to make certain that saturation is based on the widest possible range of data on the category.
saunders2017-saturation-qualitative-research-exploring-conceptualization
attributes: process-oriented, context-dependent, subjective, and requiring systematic and precise analysis
rahimi2024-saturation-qualitative-research
The attributes of saturation in this study were categorized into four themes: process-oriented, context-dependent, subjective, and requiring systematic and precise analysis.
first described by Glaser and Strauss (1967) in grounded theory and later carried into other qualitative approaches without adequate guidance, which leaves its meaning unclear
rahimi2024-saturation-qualitative-research
When the concept of saturation is taken from the context of grounded theory, without adequate guidance on its application in a broader context, it is not clear what it means and how it can be achieved
four incompatible readings in one literature: a theoretical category fully developed, no new codes appearing, pre-set codes exemplified, or data repeating themselves
saunders2017-saturation-qualitative-research-exploring-conceptualization
Extending previous literature that has highlighted the variability in the use of saturation (O’Reilly and Parker 2013; Walker 2012), we have scrutinized the different ways in which it has been operationalized in the research literature, identifying four models of saturation, each of which appears to make different core assumptions about what saturation is, and about what exactly is being saturated
the point during data analysis at which incoming data points (interviews) produce little or no new useful information relative to the study objectives
guest2020-thematic-saturation-method
not defined in this paper's own words; noise power over signal power, which the silencing improved
Lohse2020-neural-circuits-underlying-auditory-contrast
We measured the reliability of neuronal responses by taking the ratio of noise power of the responses to the signal power, NP/SP 39 (see Methods). Surprisingly, the reliability of responses to DRC stimuli was increased (i.e., lower NP/SP) in both MGBv (−23.8% median change, p = 1.0 × 10 −6 Wilcoxon signed-rank test) and CNIC of awake mice (–11.4% median change, p = 6.0 × 10 −6 ) when cortex was si
not defined in this paper's own words; consistency of repeated measurement under identical conditions
boateng2018-best-practices-developing-validating-scales
Reliability is the degree of consistency exhibited when a measurement is repeated under identical conditions ( 116 ). A number of standard statistics have been developed to assess reliability of a scale, including Cronbach's alpha ( 117 ), ordinal alpha ( 118 , 119 ) specific to binary and ordinal scale items, test–retest reliability (coefficient of stability) ( 1 , 2 ), McDonald's Omega ( 120 ),
not defined in this paper's own words; repeatability and internal consistency of measurements
boateng2018-best-practices-developing-validating-scales
Scale development and validation are critical to much of the work in the health, social, and behavioral sciences. However, the constellation of techniques required for scale development and evaluation can be onerous, jargon-filled, unfamiliar, and resource-intensive. Further, it is often not a part of graduate training. Therefore, our goal was to concisely review the process of scale development i
Reliability describes the interrelationship in terms of the number of items
vantilburg2021-social-emotional-existential-loneliness
determines the consistency of a set of measurements or of a measuring instrument
rich2013-accelerometer-minimum-wear-time
In order to identify units that were continuously responsive to DRC stimulation, we measured the signal power (SP) and noise power (NP) of the neural responses 39 . For all results, unless otherwise specified, we excluded units for which the ratio NP/SP > 60, indicating that these units did not respond reliably to the DRCs on repeated trials.
Lohse2020-neural-circuits-underlying-auditory-contrast
When the number of spikes is fixed, the reliability profile necessarily increases monotonically. However, in the presence of spikes due to nonspecific inputs, the reliability profile may exhibit a local peak.
Levi2022-error-correction-and-improved-precision-of-s
not defined in this paper's own words; confidence in a selected solubility value based on replication and agreement
sorkun2019-aqsoldb-aqueous-solubility-descriptors
Statistically, due to the fact that when sampling increases, reliability will increase, it can be concluded that G5 group is more reliable than G3 group and G4 group is more reliable than G2 group.
not defined in this paper's own words; environmental modification changing behavior without requiring deliberation
petrescu2016-public-acceptability-nudging-obesity
“Nudging”—modifying environments to change people’s behavior, often without their conscious awareness—can improve health, but public acceptability of nudging is largely unknown.
not defined in this paper's own words; choice influence without incentives or enforcement
hausman2015-evidence-libertarian-paternalism
A nudge is a tool for influencing people without using incentives, which are the lifeblood of economic theory, and without enforcing behavior, the essence of hard paternalism.
not defined in this paper's own words; microenvironmental choice-architecture change
adams2016-population-interventions-agency
In contrast, population interventions that require recipients to use little or no agency to benefit may be more effective and equitable. When food manufacturers reduce the salt content of bread, decreased salt intake occurs without individuals having to consciously engage with any information or actively change their behaviour [ 9 ]. So-called “nudge” interventions are one class of lower agency in
This is done by making a choice architectural change that alters people’s behaviour in a predictable way without forbidding any options or significantly changing their economic incentives
friis2017-nudge
a change to choice architecture that predictably alters behavior without banning options or materially changing incentives
bucher2020-nudges-real-life-food-purchasing
Nudging has been proposed as a promising environmental intervention strategy for modifying food choices. The term ‘nudge’ was originally coined by Thaler and Sunstein in 2008 and defined as: ‘ Any aspect of the choice architecture that alters people’s behaviour in a predictable way, without forbidding any options or significantly changing their economic incentives’ (p.6 ) [ 8 ]. Nudging became pop
an intervention that predictably alters behavior without forbidding options or substantially changing economic incentives
milkman2021-behavioural-nudges-covid-vaccinations
Nudges, defined as interventions that alter ‘people’s behavior in a predictable way without forbidding any options or significantly changing economic incentives’ 15 , could improve the uptake of COVID-19 vaccines 16 . Low-cost behavioural interventions such as these have been effectively applied to other health-related decisions 5 , such as healthy eating 17 , exercising 18 and influenza vaccinati
easy and reversible choice-architecture intervention steering behavior
kozyreva2020-citizens-internet-cognitive-tools
Nudging is a popular approach to behavioral policy that harnesses the power of choice environments and the knowledge of human psychology to design choice architectures in ways that steer people’s decisions toward a greater individual or public good ( Thaler & Sunstein, 2008 ). Nudging is based on the insight that it is possible to change people’s behavior—via their environment—without changing the
not defined in this paper's own words; vesicles released on fusion of a multivesicular body with the plasma membrane - and, in the same paper's tables, 30-100 nm particles carrying CD63/TSG101/Alix
zhang2019-exosomes-biogenesis-biologic-funct
Exosomes are nano-sized biovesicles released into surrounding body fluids upon fusion of multivesicular bodies and the plasma membrane.
not defined in this paper's own words; nanosized vesicles released by fusion of the multivesicular body with the plasma membrane - and, in practice, the 100,000x g pellet
hessvik2017-current-knowledge-on-exosome-bioge
Exosomes are nanosized membrane vesicles released by fusion of an organelle of the endocytic pathway, the multivesicular body, with the plasma membrane.
not defined in this paper's own words; EVs of endosomal origin, 30-150 nm, also called intraluminal vesicles, found in every body fluid that has been looked in
doyle2019-overview-of-extracellular-vesicles
Exosomes are a subtype of EV formed by an endosomal route and are typically 30–150 nm in diameter \ [1, 3, 4, 5\]. Specifically, exosomal vesicles form by inward budding of the limiting membrane of early endosomes, which mature into multivesicular bodies (MVBs) during the process
not defined in this paper's own words; the released intraluminal vesicles, as the biogenesis section names them
zhang2019-exosomes-biogenesis-biologic-funct
Exosomes are constitutively generated from late endosomes, which are formed by inward budding of the limited multivesicular body (MVB) membrane. Invagination of late endosomal membranes results in the formation of intraluminal vesicles (ILVs) within large MVBs [ 15 ]. During this process, certain proteins are incorporated into the invaginating membrane, while the cytosolic components are engulfed
BY SIZE AND MARKERS, in Table 1: `Size Homologous 30-100 nm`, `Markers ... CD63, TSG101, Alix, flottilin`, `Density 1.13-1.19 g/mL` - against MV at 100-1000 nm and apoptotic bodies at 1-5 um
zhang2019-exosomes-biogenesis-biologic-funct
Table 1 Characteristics of main extracellular vesicles Feature Exosome Apoptotic body MV Size Homologous 30–100 nm Heterogeneous 1–5 μm Heterogeneous 100–1000 nm Markers Membrane impermeable (PI negative) CD63, TSG101, Alix, flottilin Membrane permeable (PI positive) Annexin V, DNA, histones Membrane impermeable (PI negative) integrin, selectin, flotillin-2
small extracellular vesicles secreted by all cell types that transfer cellular cargoes in intercellular communication
gurung2021-the-exosome-journey-from-biogenesis-to-uptake
Exosomes are small extracellular vesicles secreted by all cell types playing intercellular communication roles in health and disease by transferring cellular cargoes such as functional proteins, metabolites and nucleic acids to recipient cells.
not defined in this paper's own words; shared beliefs, values, customs, behavior, and artifacts
colzato2008-religion-controls-visual-attention
However, research so far has completely ignored the influence of religion on attentional processing. Given that culture is commonly defined as a system of shared beliefs, values, customs, behaviors, and artifacts, this blind spot is surprising. It is even more surprising if one considers the recent history of increasingly dramatic international and societal conflicts based on apparent incompatibil
not defined in this paper's own words; normative context of recurring group interaction
smith2019-cultures-persons-individual-variability
We have argued that the culture of any type of group may be defined as the norms characterizing that type of group in situated interaction with the personalities of its members to yield each member’s response. This conceptualization of the cross-level relationship between culture and the psychology of its members opens up a host of possibilities for modeling individual behavior. Our vision has bee
not defined in this paper's own words; shared background influencing meaning and preference
specker2022-expertise-culture-visual-art-appreciation
Art across the world can differ in its subject matter, production methods, the role(s) played by the artist and the spectator, and its categorisation into different art forms and styles. Cultural differences can perhaps also explain why some artworks are thought to be beautiful to some spectators and not to others. Artists from diverse cultures often report distinct aesthetic experiences when look
a resource and source of evidence for health, not a barrier to biomedical intervention
hinchliffe2018-healthy-publics-enabling-cultures
In such instances, culture is not seen as a barrier to the implementation of better health; rather, culture offers us evidence, resources and possibilities for building and sustaining healthy publics.
a set of values, beliefs, norms, lifestyles, arts, and other human products that are learned, shared, and socially- transmitted between generations, guiding people's thoughts, behaviours, decisions, actions, and worldviews in a standardised manner over time and in different geographical locations
teixeira2023-transcultural-nursing-leadership
a point in data collection and analysis where new data or information does not contribute significantly to addressing the research question, or when existing data is replicated
rahimi2024-saturation-qualitative-research
the point in data collection and analysis when new incoming data produces little or no new information to address the research question
guest2020-thematic-saturation-method
New data tend to be redundant of data already collected. In interviews, when the researcher begins to hear the same comments again and again, data saturation is being reached… It is then time to stop collecting information and to start analysing what has been collected.
saunders2017-saturation-qualitative-research-exploring-conceptualization
is reached when no new analytical information arises anymore, and the study provides maximum information on the phenomenon
moser2017-qualitative-research-sampling-guidance
when other sources provided no added information, and a sense of closure is imminent
motsaanaka2022-clinical-learning-opportunity
not defined in this paper's own words; belief-consistent information selection
bessi2016-user-polarization-facebook-youtube
The diffusion of social media caused a shift of paradigm in the creation and consumption of information. We passed from a mediated (e.g., by journalists) to a more disintermediated selection process. Such a disintermediation elicits the tendencies of the users to a) select information adhering to their system of beliefs—i.e., confirmation bias—and b) to form groups of like minded people where they
not defined in this paper's own words; selective citation of evidence for human irrationality
hausman2015-evidence-libertarian-paternalism
I have devoted some space to studies that question the logical norm of descriptive invariance because these studies are rarely if ever discussed by libertarian paternalists, despite the importance they attribute to framing effects. You can call this a bias for people’s biases, or a confirmation bias: presenting studies that appear to demonstrate people’s systematic deviations from rationality but
not defined in this paper's own words; preference for content supporting favored narratives
bakshy2020-selective-exposure-facebook-news-diet
Selective exposure may lead to the emergence of echo chambers [ 19 , 20 ]—i.e. groups of like-minded people cooperating to frame and reinforce a shared narrative—thus facilitating fake news and more generally misinformation cascades [ 21 , 22 ]. This is especially valid when considering the way in which we have shifted from a paradigm where information was supplied by few official news sources med
not defined in this paper's own words; attention to evidence consistent with expectations or favored explanations
munafo2017-manifesto-reproducible-science
A hallmark of scientific creativity is the ability to see novel and unexpected patterns in data. John Snow's identification of links between cholera and water supply 17 , Paul Broca's work on language lateralization 18 and Jocelyn Bell Burnell's discovery of pulsars 19 are examples of breakthroughs achieved by interpreting observations in a new way. However, a major challenge for scientists is to
plastic particles <5 mm in diameter
kanhai2020-microplastics-arctic-sea-ice
plastic particles smaller than 5 mm in length
kooi2016-buoyant-plastics-depth-profile
not defined in this paper's own words; small plastic particles, here 32-651 um
pabortsava2020-atlantic-subsurface-plastic
The majority of the polymer-specific microplastics were <100 µm (PE = 68%, PP = 49% and PS = 67%) with the peak size distribution observed in the range 50–75 µm for all the polymer groups (Fig. 3 ).
any particle of synthetic plastic smaller than 5 mm
ross2021-polyester-fibres-arctic-ocean
not defined in this paper's own words; plastic particles under 5 mm - with the nano-scale included here and excluded by the other microplastics record in this corpus
smith2018-microplastics-in-seafood-and-the-i
Additionally, when plastics are exposed to natural forces like sunlight and wave action, plastics will degrade into microplastics—defined as plastic particles under 5 mm in size. This definition commonly includes plastic pieces in the nano-scale, < 1 μm in size.
water-insoluble, solid polymer particles that are <=5 mm in size - and A FORMAL DEFINITION FOR THE LOWER SIZE BOUNDARY DOES NOT EXIST
koelmans2019-microplastics-in-freshwaters-and-d
Microplastics are generally characterised as water-insoluble, solid polymer particles that are ≤5 mm in size ( Bergmann et al., 2015). A formal definition for the lower size boundary does not exist, but particles below 1 μm are usually referred to as nanoplastics rather than microplastic
pelagic plastic fragments under 5 mm in diameter
isobe2019-microplastics-upper-ocean
Recent studies have reported the presence of pelagic plastic fragments with diameters <5 mm (referred to as microplastics) in the open oceans including polar waters 1 – 6 , marginal seas 7 , 8 , and coastal waters 9 .
`synthetic solid particles or polymeric matrices, with regular or irregular shape and with size ranging from 1 um to 5 mm, of either primary or secondary manufacturing origin, which are insoluble in water`
campanale2020-a-detailed-review-study-on-potenti
Microplastics (MPs) are defined by [ 17 ] as “synthetic solid particles or polymeric matrices, with regular or irregular shape and with size ranging from 1 μm to 5 mm, of either primary or secondary manufacturing origin, which are insoluble in water.
smaller than 5 mm
romera-castillo2018-plastics-dissolved-organic-carbon
not defined in this paper's own words; learning predictive models from data
schutt2019-machine-learning-molecular-wavefunctions
Machine learning (ML) methods reach ever deeper into quantum chemistry and materials simulation
not defined in this paper's own words; automation used to identify relevant evidence
page2021-prisma-systematic-review-reporting-guideline
Many innovations in the conduct of systematic reviews have occurred since publication of the PRISMA 2009 statement. For example, technological advances have enabled the use of natural language processing and machine learning to identify relevant evidence, 22 23 24 methods have been proposed to synthesise and present findings when meta-analysis is not possible or appropriate, 25 26 27 and new metho
not defined in this paper's own words; data-driven modeling used to construct atomistic potentials
smith2017-ani1-dataset-organic-molecules
Machine learning (ML) methods are emerging as a powerful approach to constructing various forms of transferable atomistic potentials.
not defined in this paper's own words; data-driven models fitted to reference calculations
smith2019-neural-network-potential-transfer-learning
Machine learning (ML) methods have seen much success in the last decade due to increased availability of data and improved algorithms 18 – 20 .
not defined in this paper's own words; family of predictive algorithms
jiang2021-graph-neural-networks-molecular-representation
Molecular property modelling, which assists in hunting for chemicals with desired pharmacological and ADME/T (absorption, distribution, metabolism, excretion, and toxicity) properties, is one of the most classical cheminformatics tasks [ 1 , 2 ]. A variety of machine learning (ML) approaches, such as Naive Bayes (NB) [ 3 – 5 ], k-Nearest Neighbors (k-NN) [ 6 ], logistic regression (LR) [ 7 , 8 ],
not defined in this paper's own words in this sentence
dang2023-human-centred-ai-mobile-health, sujeeun2020-nanofibrous-scaffold-performance
However, the application of machine learning (ML) to mobile health sensing poses unique challenges due to noisy sensor measurements, high-dimensional data, sparse and irregular time series, heterogeneity in data, privacy concerns and resource constraints.
not defined in this paper's own words; computational methods used across materials-property prediction, simulation, design, and synthesis-route prediction
reiser2022-graph-neural-networks-materials-chemistry
Machine learning plays an increasingly important role in many areas of chemistry and materials science, being used to predict materials properties, accelerate simulations, design new structures, and predict synthesis routes of new materials.
not defined in this paper's own words; supervised models trained on soil profiles and predictors
hassani2021-soil-salinization-climate
As a result of these practical limitations, we utilize Machine Learning (ML) algorithms as an alternative approach to predict the future of primary soil salinization on a global scale.
mathematical algorithms that have been coded into computer programs
kibble2020-integrative-machine-learning-obesity-twins
15 Machine learning, a branch of AI, can be broadly described as data analytical methods that learn from data without being explicitly programmed, with patterns identified based on the data itself.
collins2021-protocol-for-development-of-a-reporting-guideline
Deep learning overview ML aims at developing computational algorithms or statistical models that can automatically infer hidden patterns from data 12 , 13 .
su2020-deep-learning-in-mental-health-outcome-research
Machine Learning Terminology and Definitions Typically, ML methodologies involves a learning process with the objective to learn from “experience” (training data) to perform a task.
liakos2018-machine-learning-in-agriculture-a
algorithms that improve automatically through experience
jackson2021-text-thought-language-psychological-science
Many of these insights derive from the advancement of “machine learning”—computer algorithms that can improve automatically through experience.
a subset of AI centred on software that learns autonomously from data
najjar2023-redefining-radiology-a-review-of-artificial-intelligence
Machine learning, a subset of AI, is centred around the development of software that learns autonomously from accessed data.
not defined in this paper's own words; the source of the nonlinear function classes that make the detection step possible where earlier data-driven methods failed
Davies2021-advancing-mathematics-by-guiding-human-intui
The key contributions of machine learning in this regression process are the broad set of possible nonlinear functions that can be learned given a sufficient amount of data.
not defined in this paper's own words; error reduction by changing sampled states
williams2018-predictive-processing-representation-wars
So far this process is extremely reactive. An overarching imperative to minimize prediction error, however, can be satisfied in one of two ways: either by updating top-down predictions to bring them into alignment with the incoming data, or by updating the incoming data to bring it into alignment with top - down predictions . Whereas the former constitutes “reactive inference” (Sims 2016 ), the la
not defined in this paper's own words; free-energy-based account of perception and action
constant2021-representation-wars-active-inference
In line with much of Bayesian statistics, active inference claims that the brain is fundamentally in the business of finessing a generative model of the causes of its sensations; as if the brain was a scientist, trying to infer the causal architecture of its own relation to its world. Put another way, under active inference, the brain is a dynamical system that models the action-relevant causal st
coupled perception and action that minimize surprise and sustain organismic integrity
allen2016-cognitivism-autopoiesis-embodied-mind
From this fundamental property of existence, it follows that any biological organism will possess the following characteristics: Ergodicity By placing an upper bound on entropy, an organism will necessarily occupy (the neighbourhood of) some states more often than others. This means that the average probability of being in a given state is equal to the probability of the system being in that state
not defined in this paper's own words; belief and policy updating under expected free energy
constant2019-regimes-expectations-social-conformity
According to active inference, expectations are continuously updated according to Bayesian principles that underlie perceptual synthesis; namely, attention and perception ( Helmholtz, 1962 ; Dayan et al., 1995 ; Kersten et al., 2004 ; Knill and Pouget, 2004 ; Yuille and Kersten, 2006 ; Hohwy, 2016 ; Palacios et al., 2017 ). Active inference assumes that adaptive behavior can be described as realiz
a framework treating perception, learning, and action as processes that minimize differences between expectation and experience
constant2024-narrative-active-inference
Active inference is a theory of perception, learning and action, which aims to provide a unified explanation of these basic cognitive functions, as all operating under the same imperative to minimize the difference between what was expected and what was experienced (i.e., prediction error). Originally developed in computational neuroscience as a theory of the structure, function, and dynamics of t
predictive coding with classical motor reflexes
friston2012-dopamine-affordance-active-inference
an example of a concept in which none of the attributes are present
sun2022-digital-resilience-school-education
does not include any defined attributes of the concept [ 17 ]
cao2023-nursing-professionalism-concept
not defined in this paper's own words; its contrary case holds none of the attributes of impressionability
gwon2018-impressionability-concept
This contrary case does not contain any attributes of impressionability. Rather, this is the complete opposite to impressionability
the direct opposite of a model case, which indicated a clear example of what the concept was not and thus lacked all the defining attributes
motsaanaka2022-clinical-learning-opportunity
represents a scenario that contradicts or opposes the defining attributes of the concept being analysed
abujaber2024-nursing-privilege
represents the opposite of the concept’s meaning
pereira2024-positive-nursing-practice-environment
a clear instance of what the concept is not
teixeira2023-transcultural-nursing-leadership
helps to improve the clarity of the concept under scrutiny by presenting a case that does not reflect the concept
hou2022-violence-against-nurses-emergency
a scenario that starkly contrasts with the core attributes of eco-conscious practices in nursing
shaban2024-eco-conscious-nursing
one where there is an absence of the key defining attributes previously identified
balaam2017-migrant-women-pregnancy
not defined in this paper's own words; ability to avoid false positives
mcmurdie2014-rarefying-microbiome-data-inadmissible
In simulations evaluating performance in the detection of differential abundance, we found an improvement in sensitivity and specificity when normalization and subsequent tests are based upon a relevant mixture model ( Figure 6 ). Multiple t-tests with correction for multiple inference did not perform well on this data, whether on rarefied counts or on proportions. A direct comparison of the perfo
not defined in this paper's own words; diagnostic accuracy measure
benchimol2015-record-routinely-collected-health-data
The risk of misclassification bias in studies using routine health data, as in many other epidemiological studies, may threaten the validity of study findings [ 31 ]. Although the risk of misclassification is amplified in studies using databases containing large populations, such studies offer an opportunity to study rare or uncommon diseases [ 32 ]. Validation of identification methods has been i
not defined in this paper's own words; how detailed and unambiguous an intervention's description is
carroll2007-a-conceptual-framework-for-impleme
Detailed or specific interventions have been found to be more likely to be implemented with high fidelity than ones that are vague. For example, a study of guidelines intended for General Practitioners (GPs) found that detailed and clear recommendations were almost twice as likely to be followed as vague and non-specific recommendations [ 23 ]. The specificity of these guidelines was assessed by a
not defined in this paper's own words; true-negative performance metric
ainsworth2020-performance-characteristics-of-fiv
Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) has caused a global pandemic in 2020. Testing is crucial for mitigating public health and economic effects. Serology is considered key to population-level surveillance and potentially individual-level risk assessment. However, immunoassay performance has not been compared on large, identical sample sets. We aimed to investigate the perfo
not defined in this paper's own words; true-negative rate reported for family classification
asgari2015-protvec
For the evaluation we report specificity (true negative rate), sensitivity (true positive rate), and the accuracy of family classifications
not defined in this paper's own words; reported at 88% at the same cut-off, jointly fixing the operating point
ettman2020-prevalence-of-depression-symptoms
Depression symptoms in both studies were assessed using the Patient Health Questionnaire–9, a clinically validated survey with a sensitivity of 88% and a specificity of 88% at a cutoff score of 10 or higher.
measures the ability of a method to avoid wrongly considering other behaviours as the target behaviour
jeantet2020-multi-sensor-loggers-sea-turtle-behaviour
not defined in this paper's own words; how precise a GO term's underlying concept is - the property depth fails to measure
schlicker2006-a-new-measure-for-functional-simil
One problem is that the depth of a term in the GO graph is not representative of the specificity of the underlying concept. Different terms on the same rank (same depth in the GO graph) usually are not equally specific.
the lawful correspondence between ecological information and available affordances
heft2018-history-philosophy-ecological-psychology
Ecological information is informative of the environment because it specifies the available affordances. ‘Specificity’ refers to the idea by which the presence of ecological information corresponds to the direct perception of affordances. Some authors interpret the meaning of specificity as in legal contracts: as a guarantee for the presence of certain elements (for example, a certain pattern of l
not defined in this paper's own words; FAIR integration dimension
wilkinson2016-fair-guiding-principles-data-stewardship
This article describes four foundational principles—Findability, Accessibility, Interoperability, and Reusability—that serve to guide data producers and publishers as they navigate around these obstacles, thereby helping to maximize the added-value gained by contemporary, formal scholarly digital publishing. Importantly, it is our intent that the principles apply not only to ‘data’ in the conventi
not defined in this paper's own words; ability of heterogeneous biodiversity sources to be combined and used
wieczorek2012-darwin-core-evolving-community-biodiversity-data-standard
Biodiversity data derive from myriad sources stored in various formats on many distinct hardware and software platforms. An essential step towards understanding global patterns of biodiversity is to provide a standardized view of these heterogeneous data sources to improve interoperability. Fundamental to this advance are definitions of common terms. This paper describes the evolution and developm
not defined in this paper's own words; cross-package operation without cumbersome conversion
lawrence2013-genomic-ranges-software
The primary argument for storing ranges in specialized, formal data structures is efficiency, in terms of both implementation and language. The notion of ranges can be made explicit in the application programming interface (API), permitting the expression of algorithms in a succinct and readable language that illustrates concepts instead of exposing implementation details. Another goal is interope
not defined in this paper's own words; direct transfer among SwissDrugDesign tools
daina2017-swissadme-free-web-tool
The SwissADME Web tool enables the computation of key physicochemical, pharmacokinetic, drug-like and related parameters for one or multiple molecules. In one hand, efforts were put in the backend to embed free open-access and fast predictive models showing statistical significance, predictive power, intuitive interpretation, and straightforward translation to molecular design. These models are ad
not defined in this paper's own words; the ability of digital systems to work together, identified here as an unresolved integration issue
johnson2016-mimic-iii-critical-care-database
Despite this advance, interoperability of digital systems remains an open issue, leading to challenges in data integration. As a result, the potential that hospital data offers in terms of understanding and improving care is yet to be fully realized. In parallel, the scientific research community is increasingly coming under criticism for the lack of reproducibility of studies 2 .
the FAIR objective that digital objects can be automatically integrated across formats, standards, and resources
wilkinson2016-fair-guiding-principles-data-stewardship
We will consider the current approach to this problem from a variety of data discovery and integration perspectives. If the desired datasets existed, where might they have been published, and how would one begin to search for them, using what search tools? The desired search would need to filter based on specific species, specific tissues, specific types of data (Poly-A, microarray, NGS), specific
Interoperability: Current State The Health Information and Management Systems Society defines interoperability as “the ability of different information technology systems and software applications to communicate, exchange data, and use the information that has been exchanged” [ 14 ].
gordon2018-blockchain-technology-for-healthcare-facilitating-the-transition
a possibility for action available to an organism in relation to its environment
heft2018-history-philosophy-ecological-psychology
‘Affordance’ is the ecological concept that has had a major diffusion since it was coined in the 1960s ( J. J. Gibson, 1966 , p. 285), although J. J. Gibson used some terms for affordances previously ( J. J. Gibson, 1950 , pp. 198–199). He proposed ‘affordance’ as an alternative for ‘value’ as it is used in philosophy. During the 1970s, J. J. Gibson (1977) refined the term while his colleagues sta
not defined in this paper's own words; environmental possibility specified relative to an organism
baggs2020-ecological-psychology-enactivism-action
Gibson ( 1979 ) developed the concept of affordance—what the environment affords the organism in support of action, nutrition, social action, and so forth, and proposed that affordances are specified in the energy arrays that an animal's or human's perceptual systems resonate to as they move through and adapt to and change their surround. This idea clearly meets the three criteria of relational co
not defined in this paper's own words; environmental property or emergent organism-environment relation
heft2018-history-philosophy-ecological-psychology
Despite its centrality within ecological psychology, there is not a single definition shared by all ecological psychologists. We can differentiate between those authors who claim that affordances are properties of the environment that are complemented by aspects of organisms, while there are other authors claiming that affordances are properties of the organism-environment system.
not defined in this paper's own words; relational opportunity or constraint for action
popova2020-enactivism-ecological-psychology-agency
In an often quoted definition: “[t]he affordances of the environment are what it offers the animal, what it provides or furnishes , either for good or ill” ( Gibson, 1979 , p. 127).
not defined in this paper's own words; relational opening for exploration rather than a fixed prescription
van-der-schijff2018-4e-music-pedagogy-self-organization
Similarly, one might also consider how a composition student may gain relevant knowledge of the harp by asking a professional harp player about its main features (e.g., the double-action pedals). The developing composer gains understandings of the possibilities of an instrument she does not play by interacting with the harpist as an extended cognitive resource. Likewise, when the harpist prepares
an object or an environment (implicitly) affects and structures human behavior by virtue of its material and formal properties
waldfuhrmann2021-classical-concert-listening
not defined in this paper's own words; what flips after reversal
Pho2018-task-dependent-representations-of-stimulus-a
We found that V1 selectivity did not change significantly after reversal (Fig.
not defined in this paper's own words; the part of tuning that survives normalisation
Chen2019-differential-cell-type-dependent-brain-state
2f, h ), but the temporal tuning selectivity (Fig.
not defined in this paper's own words; filtering of stimuli, thoughts, and feelings
ouwersloot2020-reintroducing-consciousness-in-psychopatholo
A disruption in the function of “filtering” or “selectivity” of consciousness leads to patients being overloaded by sensory stimuli, thoughts, and feelings when the filtering function is too loose as in manic disorder, attention disorders, and hyperactivity disorders.
Was the brain state change-induced quantitative differences in the fluorescence accompanied by qualitative changes in auditory tuning? To address this question, we normalized the frequency tuning curves by their respective maximum values. Compared to isoflurane anesthesia, tuning selectivity of the number 4 neuron was similar, whereas tuning selectivity of the number 22 neuron was increased during wakefulness.
Chen2019-differential-cell-type-dependent-brain-state
not defined in this paper's own words; the reciprocal of the number of clusters a gene set would annotate - the paper's own definition of how distinctive a marker is
zeisel2018-molecular-architecture-of-the-mous
We defined selectivity as the reciprocal of the number of clusters that would be assigned auto-annotation given the current gene set and the trinarization scores. That is, an annotation that would apply to k clusters would have selectivity 1/ k .
the potency of a prebiotic to stimulate a specific gut microbiota
davanidavari2019-prebiotics-definition
not defined in this paper's own words; virtual platforms for connection and content sharing
clark2021-weight-stigma-social-media
Social media, such as Instagram, Facebook, or Twitter, refers to online, virtual-based platforms that allow individuals to connect and share content, either in private or public capacities ( 8 ). Due to its widespread use and theoretical ability to connect individuals across different experiences and perspectives, social media has a potentially prominent role in both exacerbating and lessening wei
internet platforms enabling people to connect and share experiences, information, and ideas virtually
clark2021-weight-stigma-social-media
The use of social media, which refers to internet-based platforms that enable people to connect virtually to share experiences, information and ideas ( 8 ), has become ubiquitous.
not defined in this paper's own words; channel for official and user-generated outbreak information
gao2020-mental-health-problems-and-social
Introduction A public health emergency of international concern-novel coronavirus disease (COVID-19) outbroke[ 1 ] in Wuhan, China on 31 December 2019, which has been spread to 24 countries outside of China and infected 37,558 patients globally (37,251 in China) by 9 February 2020[ 2 ]. The outbreak of COVID-19 in China has caused mental health problems among the public in China[ 3 ] and Japan[ 4
an umbrella term that describes a variety of online platforms
aichner2021-social-media-definitions
differ from other types of Internet platforms in that they are characterized by their mass use, they allow content creation, and are not only consumed passively
polancolevican2022-social-media-literacy-concept
The cases that do not reflect the defining attributes are called contrary cases
ananzeh2026-moral-distress-family-caregivers
contain none of the defining attributes
timoteo2024-legacy-end-of-life-care
examples that contain none of the defining attributes of the concept
zhang2026-digital-social-prescribing-concept
distinct examples that illustrate instances where the concept is absent or does not apply
muswede2026-political-astuteness-nurse-leadership
Generalized Linear Models
troudet2017-taxonomic-bias-biodiversity-data
Using a general linear model (GLM) to fit neuronal calcium traces, we classified the trial-active neurons (n = 126) as cue-responsive (22.2%), touch-responsive (11.9%), mixed-responsive (11.9%) and suppressed (17.5%) based on the dynamics of their calcium responses to the trial period; the remaining 36.5% of ‘unclassified’ active neurons responded neither to auditory cues nor to texture presentation
Mohan2018-sensory-representation-of-an-auditory-cued-t
not defined in this paper's own words; the model that splits one trace into three components
Pho2018-task-dependent-representations-of-stimulus-a
Open in a new tab Generalized linear model (GLM) of V1 and PPC responses.
studies the influence of various independent factors on a dependant variable
lazard2012-cochlear-implant-factors-model
emphasizes the active engagement of patients in their care and treatment decisions
kehyayan2025-value-based-healthcare-concept
care provision that is consistent with the values, needs, and desires of patients and is achieved when clinicians involve patients in healthcare discussions and decisions
gartner2022-patient-centered-care-pathway
providing care that is respectful of, and responsive to individual patient preferences, needs, and values and ensuring that patients values guide all clinical decisions
boeykens2022-goal-oriented-care
not defined in this paper's own words; often “described by statements of what” it was not, e.g. doctor-centered or disease-centered
scholl2014-patient-centeredness-concept
Furthermore, patient-centered care has often been described by statements of what is was not, rather than explanations of what is was, e.g. doctor-centered, disease-centered [16] .
not defined in this paper's own words; nonverbal associations altered by lexical compounds
thierry2016-neurolinguistic-relativity-language-cognition
Effects such as those reviewed above are eminently predictable for one who is positively predisposed toward the premises of the linguistic relativity hypothesis: A difference in terminology relates to a difference in perceptual processing. A stronger argument in favor of linguistic relativity, then, would be to identify not merely concepts that can be distinguished on the basis of specific lexical
not defined in this paper's own words; structured long-term knowledge supporting meaning
jefferies2024-multidisciplinary-semantic-glossary
Tulving characterized semantic memory as a vast repository of meaning that underlies language and many other cognitive processes. This perspective on lexical and conceptual knowledge galvanized a new era of research undertaken by numerous fields, each with their own idiosyncratic methods and terminology. For example, “concept” has different meanings in philosophy, linguistics, and psychology. As s
similarity revealed when a cue word elicits words it brings to mind
stella2018-multiplex-mental-lexicon-learning
Free associations indicate similarities within semantic memory, i.e. when given a cue word “house”, human participants respond with words that remind them of “house”, for example “bed” or “home”. Networks of free associations play a prominent role in capturing word acquisition in toddlers 11 , 32 and also word identification 3 , 13 . Networks of synonyms are also found to play a role in lexical pr
knowing
garciapelegrin2021-evolution-storytelling
the degree to which the words’ meaning has social relevance by describing or referring to the following: a social characteristic of a person or group of people, a social behaviour or interaction, a social role, a social space, a social institution or system, a social value or ideology, or any other socially relevant concept
diveica2023-socialness-social-semantics
relevance to social characteristics, interaction, roles, spaces, institutions, systems, values, or ideologies
dove2022-social-semantics-abstract-concepts
the extent to which each word has social relevance by describing or referring to a social characteristic of a person or group of people (e.g. ‘trustworthy’), a social behaviour or interaction (e.g. ‘to fight’), a social role (e.g. ‘teacher’), a social space (e.g. ‘pub’), a social institution (e.g. ‘hospital’) or system (e.g. ‘nation’), a social value (e.g. ‘righteousness’) or ideology (e.g. ‘femin
a graded dimension rather than necessarily a discrete semantic category
dove2022-social-semantics-abstract-concepts
On the other hand, socialness can be framed as one of many dimensions that coexist to define a single representational space underlying general semantics.
an inclusive, broad construct rather than a narrow aspect of social experience
diveica2023-socialness-social-semantics
Thus, taking a crucial next step for understanding the construct of socialness, we aimed to collect ratings using an inclusive definition designed to capture all manner of features that are deemed to be socially relevant.
Autoencoder Autoencoder is a special variant of the DFNN aimed at learning new (usually more compact) data representations that can optimally reconstruct the original data vectors 16 , 20 .
su2020-deep-learning-in-mental-health-outcome-research
not defined in this paper's own words; networks trained to reconstruct their input through a compressed layer
wang2021-scgnn-graph-neural-network-single-cell
Unlike the previous autoencoder applications in scRNA-Seq data analysis, which only captures the top-down distributions of the overall cells, scGNN can effectively aggregate detailed relationships between similar cells using a bottom-up approach.
not defined in this paper's own words; network trained to reconstruct its input from a learned representation
voulodimos2018-deep-learning-for-computer-vision
An autoencoder is trained to encode the input **x** into a representation **r**( **x**) in a way that input can be reconstructed from **r**( **x**) \ [33\]. The target output of the autoencoder is thus the autoencoder input itself. Hence, the output vectors have the same dimensionality as the input vector. In the course of this process, the reconstruction error is being minimized, and the correspo
not defined in this paper's own words; opacity of machine-learning decision production
lysaght2019-ai-assisted-decision-making-healthcare
This lack of transparency is referred to as the ‘black box’ of AI.
not defined in this paper's own words; models whose decision process cannot be inspected
cirillo2021-bias-big-data-ai-open-science
Several powerful AI algorithms are employing a so-called “black box” approach, where it is difficult or even impossible to understand how the obtained results have been achieved. 66 Explainable AI by contrast includes interpretable AI models, where the strengths and weaknesses of a decision-making process are transparent. 67 AI applications often have to deal with a trade-off between model perform
a machine-learning system whose input and output are visible but whose internal rule formation is not
fritts2022-doctors-ai-human-responsibility-artificial-risks
The stark difference between ML and GOFAI, however, is not about the goals, but about the way they are achieved: the role played by the programmers of AI technology has radically changed in this paradigm shift. AI programmers are not called to program knowledge and rules into computing machines, but to feed data and tweak complex mathematical functions until they are able to process (i.e., classif
Critical Assessment of Structure Prediction
wang2017-protein-contact-deep-learning
Critical Appraisal Skills Programme
mansfield2021-loneliness-conceptual-review
not defined in this paper's own words; biennial benchmark challenge for testing structure-prediction accuracy
varadi2021-alphafold-protein-structure-database
AlphaFold is an AI system developed by DeepMind that makes state-of-the-art predictions of protein structures from their amino-acid sequences ( 9 ). CASP (Critical Assessment of Structure Predictions) is a biennial challenge for research groups to test the accuracy of their predictions against actual experimental data. In 2020, the organizers of the CASP14 benchmark recognized AlphaFold as a solut
not defined in this paper's own words; population-level allocation of content consumption
lorenz-spreen2019-accelerating-collective-attention
Thus, we use the term collective attention in a sense that is closely related to the computational social science notion 11 – 13 , that measures various forms of population-level content consumption patterns 14 – 16 .
not defined in this paper's own words; population-level concentration of searches on a public crisis
bento2020-information-seeking-local-covid-news
Because the extent of the epidemic is likely to be underestimated at this stage, it is crucial to know how much the early case announcements induce heightened collective attention and information-seeking behavior.
not defined in this paper's own words; aggregate topical traffic
wu2015-production-information-attention-economy
Phenomena like these have been already observed in a wide range of information-rich environments 1 , 14 , 19 , 20 , 25 . During the period of increased attention we see a previously unobserved phenomenon, namely that new articles about the Olympic Games are created at a higher frequency. A weaker pattern is observed for Hurricane Sandy too. To quantify the temporal relation between demand and prod
a maximal substrate with greater system integrated information than overlapping candidates
albantakis2023-integrated-information-theory-4-consciousness
In general, multiple candidate systems with overlapping units may have positive values of φ s ( T e , T c , s ) . By the exclusion postulate, the substrate of consciousness must be definite; that is, it must comprise a definite set of units. But which one? Once again, we employ the principle of maximal existence ( Box 2 ): among candidate systems competing over the same substrate with respect to a
not defined in this paper's own words; locally maximally integrated set of mechanisms
oizumi2014-iit-phenomenology-mechanisms-consciousness
Complex: A set of elements within a system that generates a local maximum of integrated conceptual information Φ Max . Only a complex exists as an entity from its own intrinsic perspective.
made so by the professions or organizational levels targeted, or by a need to tailor
mohler2015-credeci-2-guideline
Characteristics that make interventions complex are different professions or different organizational levels targeted by the intervention (context of the intervention) and/or a need to tailor the intervention for specific settings (flexibility of the intervention) [ 4 ].
clusters of users exposed to news and opinions in line with their previous beliefs
pratelli2024-entropy-twitter-echo-chambers
not defined in this paper's own words; given as another name for the structural communities
rathje2022-social-media-vaccine-hesitancy
Community detection analysis revealed that Twitter networks in the US and the UK are divided into structural communities (or “echo chambers”) broadly reflecting liberal and conservative attitudes.
not defined in this paper's own words; environments where a user's opinion is reinforced by repeated interaction with similar peers - defined broadly here because the construct's very existence is contested
cinelli2021-the-echo-chamber-effect-on-social
We can broadly define echo chambers as environments in which the opinion, political leaning, or belief of users about a topic gets reinforced due to repeated interactions with peers or sources having similar tendencies and attitudes.
Interclass Correlation Coefficient
bodroza2024-personality-testing-large-language-models
Intraclass correlation coefficient
clark2020-fetal-face-automatic-segmentation, rich2013-accelerometer-minimum-wear-time
not defined in this paper's own words; the tonotopically organized central nucleus, one of three subdivisions pooled here on the strength of a null
Goyernd-a-novel-class-of-inferior-colliculus-princip
Disc-shaped neurons maintain their dendritic arbors within isofrequency lamina and make up the majority of neurons in the tonotopically organized central nucleus of the IC (ICc).
not defined in this paper's own words; hierarchical minimization of prediction error
wahbeh2022-what-if-consciousness-is-not-an-emergent-pro
Predictive processing approaches in computational neuroscience, such as the hierarchical generative model, consider the brain as a machine that matches bottom-up inputs with top-down expectations through cortical processing, aiming to minimize the error in these predictions ( Clark, 2013 ). In this bi-directional model, top-down connections from higher levels encode the predictions in the lower le
not defined in this paper's own words; error-minimizing cognition with multiple philosophical variants
allen2016-cognitivism-autopoiesis-embodied-mind
Recent developments in cognitive science and neuroscience have led to a growth of interest in “predictive processing” theories of mind and cognitive function (Clark 2013 ; Friston 2010 ; Hohwy 2013 ). These diverse approaches share a common ground in situating top-down, error-minimising predictions as the key locus of information processing, as opposed to more classical accounts which emphasize fe
hierarchical prediction error minimization
williams2018-predictive-processing-representation-wars
Predictive processing attempts to bridge this gap (Friston et al. 2017 ). It claims that (approximate) Bayesian inference occurs through hierarchical predictive coding and prediction error minimization. There are two concepts central to an understanding of this process: the concept of a hierarchical probabilistic generative model , and the concept of predictive coding . I introduce both in turn.
lead halide perovskite solar cells
zhao2016-polymer-scaffold-self-healing-perovskite
polymer solar cells
bin2016-non-fullerene-polymer-solar-cells, sun2018-low-cost-polymer-donor-solar-cells
pancreatic stellate cells
briones-andrade2024-pancreatic-cancer-mathematical-model
not defined in this paper's own words; selective reporting that can occur within studies and reviews
moher2009-prisma
Different types of reporting biases may hamper the conduct and interpretation of systematic reviews. Selective reporting of complete studies (e.g., publication bias) [28] as well as the more recently empirically demonstrated “outcome reporting bias” within individual studies [40] , [41] should be considered by authors when conducting a systematic review and reporting its results. Though the implic
authors frequently provide analyses of outcomes in their published papers that were not the prespecified primary and secondary outcomes in their protocols, while ignoring their prespecified outcomes (that is, selective outcome reporting)
schulz2010-consort
not defined in this paper's own words; manipulation of which outcomes and analyses are reported, described as common even in randomized trials
ioannidis2005-false-findings
For example, there is strong evidence that selective outcome reporting, with manipulation of the outcomes and analyses reported, is a common problem even for randomized trails [ 25 ].
not defined in this paper's own words; self-aware capacity required for moral answerability
fritts2022-doctors-ai-human-responsibility-artificial-risks
Floridi & Sanders, ( 2004 ) argue that artificial autonomous agents can be considered moral agents, and that they constitute an instance of “mind-less morality”. In disagreement with them, Véliz, ( 2021 ) argues that “the main reason why algorithms can be neither autonomous nor accountable is that they lack sentience”. Sentience “is necessary for moral agency” because it implies the necessary mora
the capacity for conscious and subjective experiences of pain, suffering and pleasure
stucki2020-legal-animal-rights
not defined in this paper's own words; felt experience of pleasure and pain
cervantes2021-moral-zombies-algorithms-agents
The zombie thought experiment is yet to be applied to the realm of morality, but there is an analogous question to be explored regarding sentience and moral agency. Applying the zombie thought experiment to moral agency can help us assess whether moral agency is something independent of conscious experience, or sentience. By sentience I mean the capacity, at a minimum, to have a subjective experie
not defined in this paper's own words; investigation with participants, interventions, and outcomes
page2021-prisma-systematic-review-reporting-guideline
Study —An investigation, such as a clinical trial, that includes a defined group of participants and one or more interventions and outcomes. A “study” might have multiple reports. For example, reports could include the protocol, statistical analysis plan, baseline characteristics, results for the primary outcome, results for harms, results for secondary outcomes, and results for additional mediato
not defined in this paper's own words; the present observational investigation
gao2020-mental-health-problems-and-social
Design and participants This cross-sectional study was online conducted during Jan 31 to Feb 2, 2020. Chinese citizens aged≥18 years old were invited to participate online survey though Wenjuanxing platform( https://www.wjx.cn/app/survey.aspx ). In total, 5,851 participants took part in the survey. After removing the participants without completed questionnaires, 4872 participants from 31 province
not defined in this paper's own words; FLOTILLA's class combining data, tools, and plotting functions
wolf2018-scanpy-large-scale-single-cell-gen
Hence, only the latter provides a data analysis framework that solves more than one specific task. In contrast to SCANPY , however, FLOTILLA is neither targeted at single-cell nor at large-scale data and does not provide any graph-based methods, which are the core of SCANPY . Also, FLOTILLA is built around a complicated class STUDY , which contains data, tools, and plotting functions. SCANPY , by
topologically associating domains
albkhetan2018-chromatin-looping-statistical-model
contiguous regions with enriched physical contacts separated by insulator elements
brandani2024-bayesian-simulations-chromatin-condensation
not defined in this paper's own words; 0.5-1.0 Mb chromosome domains
chiariello2016-polymer-physics-chromosome-organisation
Chromosomes are folded into a sequence of 0.5–1.0 Mb long domains, known as TADs
not defined in this paper's own words; learning with many-layered neural networks
lao2017-deep-learning-radiomics-glioblastoma
Convolutional Neural Network (CNN) 12 is a typical artificial neural network in deep learning, which has achieved state-of-the-art performances on image and video recognition
not defined in this paper's own words; learning with multi-layer neural networks
cheng2016-computer-aided-diagnosis-deep-learning-breast
First , deep learning can directly uncover features from the training data, and hence the effort of explicit elaboration on feature extraction can be significantly alleviated.
deep learning algorithms attempt to model high-level abstractions in data by using multiple processing layers
koshiyama2024-algorithm-auditing-ai-risks
algorithms for learning deep neural network architectures with many hidden layers
sheehan2016-deep-learning-population-genetic-inference
The use of multiple layers of convolution and max-pooling (deep learning)
cunningham2019-automated-posture-estimation-cerebral-palsy
a machine learning approach based on the automatic learning of the relevant features found in the data
tiulpin2018-knee-osteoarthritis-deep-learning
not defined in this paper's own words in this sentence
newaz2020-network-protein-structural-classification
we aim to extract such features automatically via deep learning (DL).
not defined in this paper's own words; multi-layer representation-learning approach
jiang2021-graph-neural-networks-molecular-representation
Molecular property modelling, which assists in hunting for chemicals with desired pharmacological and ADME/T (absorption, distribution, metabolism, excretion, and toxicity) properties, is one of the most classical cheminformatics tasks [ 1 , 2 ]. A variety of machine learning (ML) approaches, such as Naive Bayes (NB) [ 3 – 5 ], k-Nearest Neighbors (k-NN) [ 6 ], logistic regression (LR) [ 7 , 8 ],
the application of multi-layered artificial neural networks to a wide range of problems
litjens2016-deep-learning-histopathology
neural-network feature learning through multiple hidden layers that combine low-level into abstract high-level features
liu2021-plant-diseases-and-pests-detection-based-on
The basic idea of deep learning is: using neural network for data analysis and feature learning, data features are extracted by multiple hidden layers, each hidden layer can be regarded as a perceptron, the perceptron is used to extract low-level features, and then combine low-level features to obtain abstract high-level features, which can significantly alleviate the problem of local minimum.
not defined in this paper's own words; pre-trained neural models of computer vision that embed images in feature spaces
epjds2023-compression-ensembles
Compression vectors can be rapidly compared, clustered, or used in image recognition and comparison tasks, as demonstrated below. Our method is comparable, but largely orthogonal to deep learning models of computer vision that also embed images in numeric vector spaces. Typically pre-trained on very large image databases, the latter excel at inferring image similarity (in the feature space), and c
not defined in this paper's own words; representation-learning approach for large messy multimodal data
rajkomar2018-scalable-accurate-deep-learning-electronic-health-records
Recent developments in deep learning and artificial neural networks may allow us to address many of these challenges and unlock the information in the EHR. Deep learning emerged as the preferred machine learning approach in machine perception problems ranging from computer vision to speech recognition, but has more recently proven useful in natural language processing, sequence prediction, and mix
layers of simple nonlinear models learning successively more abstract input representations
mcnutt2021-gnina-molecular-docking-deep-learning
Deep learning (DL) methods allow direct inference of features from inputs. They learn a representation of the inputs via layers of simple, non-linear models which transform the representation to higher abstractions to learn complex functions [ 29 ]. DL methods have demonstrated success in a variety of fields, such as computer vision and natural language processing [ 30 , 31 ]. In recent years, the
learning features directly from large image sets rather than hand-crafted extractors
litjens2016-deep-learning-histopathology
These systems function by learning relevant features directly from huge image databases (typically millions of images).
a machine-learning subset using multilayered artificial neural networks
najjar2023-redefining-radiology-a-review-of-artificial-intelligence
Deep learning, an ML subset, utilises multilayered artificial neural networks (aptly coined “deep”), enabling DL algorithms to model and understand complex data patterns.
AS DEFINED HERE: computational models of multiple processing layers learning representations at multiple levels of abstraction, MIMICKING how the brain perceives multimodal information - the definition carries a brain analogy inside it
voulodimos2018-deep-learning-for-computer-vision
Deep learning allows computational models of multiple processing layers to learn and represent data with multiple levels of abstraction mimicking how the brain perceives and understands multimodal information, thus implicitly capturing intricate structures of large‐scale data.
Deep learning refers to seeking meaning, relating and extending ideas, looking for patterns and underlying principles, checking evidence and relating it to conclusions, examining arguments cautiously and critically, and becoming actively interested in course content (see reference 29 ).
hattie2016-learning-strategies-a-synthesis-and-conceptual-model
`a subcategory of Machine Learning ... introduced in 1943 when threshold logic was introduced`, and in the abstract `a subset of ML`. Two containment words for the same relation in one paper, and only the second is on a list the gate holds
saleem2019-plant-disease-detection-and-classi
The Deep Learning (DL) approach is a subcategory of Machine Learning (ML), introduced in 1943 [ 1 ] when threshold logic was introduced to build a computer model closely resembling the biological pathways of humans.
events that occur before a concept and contribute to the occurrence of the concept
alshakhshir2024-spiritual-competence-nursing
events that must occur prior to the occurrence of the concept
hughes2018-public-involvement-concept-analysis
events that occur prior to the concept
jung2022-ehealth-literacy-older-adults
events that occur before the intended concept [ 17 ]
cao2023-nursing-professionalism-concept
events that precede the occurrence of the concept
motsaanaka2022-clinical-learning-opportunity
antecedents are defined as events that arise before the occurrence of the concept
monteiro2025-spiritual-awakening-concept
events or phenomena that precede the concept ( Rodgers, 2000 )
liang2022-social-isolation-cancer-concept
events occurring or in place before the concept can emerge
gartner2022-patient-centered-care-pathway
those events or incidents that must occur before or be in place prior to the occurrence of the concept
sun2022-psychological-birth-trauma
‘events or incidents that must occur or be in place prior to the occurrence of the concept’
razaq2025-digital-health-equity-concept
events or incidents that must occur or be in place prior to the occurrence of the concept
balaam2017-migrant-women-pregnancy, shin2020-community-health-outreach
events that occur prior to the occurrence of the concept, and they are required for the concept to exist
ananzeh2026-moral-distress-family-caregivers
Antecedents are the events that happen before a phenomenon occurs
gwon2018-impressionability-concept
factors that must be in place before a concept can occur
pryor2026-adult-social-care-nursing-concept
events or conditions that must occur before a particular concept can manifest and exist
pereira2024-positive-nursing-practice-environment
an event or incidental condition that happens before a concept occurs
kim2023-social-responsibility-nursing-organizations
The incidents necessary for a concept to exist or happen
zhao2021-compensatory-belief-health-behavior
antecedents are the events or incidents that need to take place before the concept occurs
larsson2023-feeling-safe-perioperatively
events or situations that must already exist before a concept can occur
cao2024-change-fatigue-nurses
events that must happen before the occurrence of filial piety
xiao2024-filial-piety-caregiving
factors that must be present before the occurrence of the concept
ostaszkiewicz2020-dignity-protective-continence-care
the events or attributes that must exist prior to the occurrence of a concept
carvalho2022-positive-mental-health-literacy
events or phenomena that can be grasped through the concept of past events, or phenomena that occurred prior to the occurrence of the concept
oh2022-nurses-clinical-decision-making
events that occur before the occurrence of the phenomenon under study and have an impact on its occurrence
rahimi2024-saturation-qualitative-research
the events or situations that need to happen before a concept can take place
kehyayan2025-value-based-healthcare-concept
the events that take place prior to the occurrence of digital resilience
sun2022-digital-resilience-school-education
factors that contribute to the actions a concept describes
hallyburton2022-diagnostic-overshadowing
phenomena usually found prior to concept occurrence
brenner2020-technology-dependent-concept
refer to the events or conditions that must exist before a concept is possible
kangasniemi2023-nurses-collegiality
Antecedents are the conditions that lead up to the concept of interest
hillman2020-medication-experience-concept
events, conditions or capacities that precede the emergence of a concept
muswede2026-political-astuteness-nurse-leadership
events or phenomena leading to resilience
al-asfoor2024-health-system-resilience
the pre-existing conditions or factors that must be present for the concept to manifest within the healthcare setting
shaban2024-eco-conscious-nursing
actions or instances that must occur first hand before a concept can result
nukpezah2020-happiness-children-long-term-illness
events that occur before or because of leadership in the context of digital health services
laukka2022-leadership-digital-health
the antecedents or what causes the concept
menassa2023-healthy-ageing-concepts-definitions
come before defining attributes, and all of them must be present for the concept to be realized
timoteo2024-legacy-end-of-life-care
events or happenings that occur before the phenomenon, including the relationships with its temporal and sociocultural context [ 15 ]
lima2023-resilience-older-people
events or incidents that precede the process of applying goal-oriented care
boeykens2022-goal-oriented-care
the foundational conditions and driving factors that are necessary for its emergence
lu2025-patient-public-involvement-research
a prerequisite for the concept to be experienced
timmins2024-moral-distress-student-nurses
preceding elements and conditions that are required for therapeutic adherence, although these elements are insufficient on their own
laranjeira2023-therapeutic-adherence-mental-disorders
pre‐existing actions or causes that are consistently associated with a concept
roberts2017-othering-nursing-concept
refer to the pre-existing events and contextual conditions that lay the foundational background and driving forces for the formation of a specific concept
zhang2026-digital-social-prescribing-concept
the prerequisites that must be met for decolonisation of the curriculum to take place
makhene2023-decolonisation-nursing-curriculum
variables that precede or influence hope
antunes2023-hope-in-nursing-care
A low level of intent to be vaccinated can be understood within the concept of hesitancy, the behavioural ‘delay in acceptance or refusal of vaccines despite availability of vaccine services’ (SAGE Working Group on Vaccine Hesitancy, 2014 ).
freeman2020-covid-19-vaccine-hesitancy-in-the-uk
The WHO Strategic Advisory Group of Experts Working Group on Vaccine Hesitancy define it as the “ delay in acceptance or refusal of safe vaccines despite availability of vaccination services ” ( MacDonald, 2015 ).
robertson2021-predictors-of-covid-19-vaccine-hesitancy-in
Vaccine hesitancy is defined as the delay in acceptance, reluctance, or refusal of vaccination despite the availability of vaccination services [ 2 , 3 ].
soares2021-factors-associated-with-covid-19-vaccine-hesitancy
Vaccine hesitancy is the term used to define refusal or reluctance in the acceptance of vaccination despite the availability of vaccination services [ 1 ].
sallam2021-high-rates-of-covid-19-vaccine-hesitancy
measured here as low self-reported confidence in the vaccine's safety and effectiveness
rathje2022-social-media-vaccine-hesitancy
In Study 1, we found that following the accounts of US Republican politicians or hyper-partisan/low-quality news sites were associated with lower confidence in the COVID-19 vaccine—even when controlling for key demographics such as self-reported political ideology and education.
not defined in this paper's own words; named by WHO as one of the top ten threats to global health in 2019, and treated here as the converse of confidence
figueiredo2020-mapping-global-trends-in-vaccine-c
In this context, WHO has named vaccine hesitancy as one of the top ten threats to global health in 2019 alongside climate change.
not defined in this paper's own words; quoted from WHO SAGE in the narrowed form - `vaccines` and `vaccine services` where the source wrote `vaccination` and `vaccination services`
betsch2018-beyond-confidence-development-of-a
The first international systematic endeavor was a working group of a WHO advisory body (Strategic Advisory Group of Experts on Immunization, SAGE), defining vaccine hesitancy as the “delay in acceptance or refusal of vaccines despite availability of vaccine services. Vaccine hesitancy is complex and context specific, varying across time, place and vaccines. It is influenced by factors such as comp
not defined in this paper's own words; mismatch between expected and obtained social reward
veissiere2018-hypernatural-monitoring-smartphone-addiction
Cue-activated reward anticipation and prediction errors and subsequent dopaminergic activity (adapted from Keiflin and Janak, 2015 ). (A) Before the cue is conditioned, the unexpected reward results in phasic activation of dopamine neurons and a positive reward prediction error. (B) Once a reward is conditioned, the cue (and not the reward) results in a positive reward anticipation and increased d
not defined in this paper's own words; mismatch between top-down and bottom-up signals
fabry2019-mind-wandering-reader-predictive-enculturation
According to recently developed predictive processing accounts, perceptual, active, and cognitive phenomena are realized by the minimization of the discrepancies between top-down predictions and bottom-up prediction error signals (Friston, 2005 , 2010 ; Clark, 2013 , 2016 ; Hohwy, 2013 ). The assumption is that the human cortex implements a hierarchical generative model. Each layer of the hierarch
not defined in this paper's own words; mismatch signal used to update expectations
mencke2019-atonal-music-uncertainty-pleasure
These top–down predictions continuously encounter bottom-up sensory input and in the event that the model has generated an incorrect prediction, a PE signal is used to update the model ( Kopell et al., 2000 ; Fontolan et al., 2014 ).
not defined in this paper's own words; difference between expected and experienced states
constant2024-narrative-active-inference
Active inference is a theory of perception, learning and action, which aims to provide a unified explanation of these basic cognitive functions, as all operating under the same imperative to minimize the difference between what was expected and what was experienced (i.e., prediction error). Originally developed in computational neuroscience as a theory of the structure, function, and dynamics of t
not defined in this paper's own words; dopamine-linked reward-learning signal
clithero2008-foundations-neuroeconomics
Aside from producing new hypotheses, neurobiological knowledge can also introduce constraints. Models of neural function have guided theories of executive control and decision making [ 76–82 ]. Likewise, integrating psychological concepts into models is not new to economics [ 83 , 84 ]. We argue that neuroscience can inspire models of behavior that conform to our current scientific knowledge, i.e.
not defined in this paper's own words; mismatch between expected and received sensory input
williams2018-predictive-processing-representation-wars
By combining generative models and predictive coding in this way, the brain can identify the multilevel set of interacting hidden causes that best explain its evolving sensory input by minimizing the error in its predictions of this input—a process thought to combine prior expectations enshrined in the generative model with incoming evidence in the Bayes optimal way outlined above (Clark 2013 ; Ho
not defined in this paper's own words; one of its two named fields
padial2010-the-integrative-future-of-taxonomy
Systematics: biological discipline that studies evolutionary patterns of biological diversity, including the fields of taxonomy and phylogenetics. Taxonomy: biological discipline that identifies, describes, classifies and names extant and extinct living beings and deals with the theory of classification. Taxonomic character: observable or quantifiable organismal trait used to separate species.
not defined in this paper's own words; the discipline comprising classification and naming, dated by this paper to Linnaeus
lefkowitz2018-virus-taxonomy-the-database-of-the
The process used to study any new biological entity begins by classifying it in relation to other known biological organisms, and then giving it a name ( 1 – 3 ). This process of classification and naming comprises the discipline of taxonomy, and has been an integral part of biological research since at least the 18th Century when Carl Linnaeus defined the principles of modern taxonomy
Taxonomies are simplistic schemes that help in the hierarchical classification of concepts or objects [ 1 ]. They are usually limited to a specific domain and to a single relationship type connecting one node to another. Ontologies share the hierarchical structure of taxonomies. In contrast to taxonomies, however, they often have multiple relationship types and are really designed to provide a formal naming of the types, properties and interrelationships of entities or concepts in a specific discipline, domain or field of study [ 2 , 3 ].
djoumbou-feunang2016-classyfire-automated-chemical-clas
not defined in this paper's own words; the catalogue of specific harms, built so that classifications are mutually exclusive while temporal categories may be crossed
langham2015-understanding-gambling-related-harm-proposed
Consistent with the guidelines for creating a taxonomy, the division of entities into classifications were mutually exclusive, yet they can cross categorical boundaries. That is, a harm that occurs in the general harm temporal category could also occur during a crisis or as a legacy harm.
not defined in this paper's own words; the hierarchical, data-driven arrangement of molecular cell types derived here
zeisel2018-molecular-architecture-of-the-mous
Here, we used RNA sequencing of half a million single cells to create a detailed census of cell types in the mouse nervous system. We mapped cell types spatially and derived a hierarchical, data-driven taxonomy.
not defined in this paper's own words; the list form the field answers `what is news?` with - offered here explicitly as a tool for analysis rather than a settled account
harcup2016-what-news
Thus, we reiterate that the above news value taxonomy should be seen as a tool for analysis and further research—designed to provoke discussion and, indeed, contestation— not something to be churned out as if it is the last word on the subject. And, whenever the question arises of why a particular story is seen as newsworthy, there will always remain an element of truth to the reply: “It just is!”
not defined in this paper's own words; quality assessed through scaling and data-processing statistics
evans2013-how-good-are-my-data-and-what-is-t
The new scaling program AIMLESS is described and tests of refinements at different resolutions are compared with analyses from the scaling step. Following integration of the observed diffraction spots, the process of ‘data reduction’ initially aims to determine the point-group symmetry of the data and the likely space group. This can be performed with the program POINTLESS . The scaling program th
not defined in this paper's own words; fitness and reliability of heterogeneous biodiversity records
wieczorek2012-darwin-core-evolving-community-biodiversity-data-standard
Data quality and fitness for use are primary concerns in the biodiversity community [42] , where information comes from heterogeneous sources spanning the globe over hundreds of years. Both data discovery and data quality assessment are hampered by this heterogeneity. Part of the solution depends on the use of common vocabularies, part on dictionaries of synonymous terms, and a great deal on appli
not defined in this paper's own words; validity of benchmark chemical records
jiang2021-graph-neural-networks-molecular-representation
Data quality is one of the fundamental questions in cheminformatics and the incorrect or inappropriate structures contained in datasets would hinder the effort of developing reliable prediction models. Here we found that some salts, inorganics, counterions, solvents, mixtures and even duplicates with inconsistent labels existing in the datasets provided by Xiong et al. [ 27 ], but we do not remove
HAS NO AGREED CRITERION IN THIS FIELD, which is the stated reason nothing is screened out: `the lack of consensus within the functional imaging community on criteria for quality assurance`
zuo2014-an-open-science-resource-for-estab
Consistent with the established FCP/INDI policy, all data contributed to CoRR was made available to users regardless of data quality. Justifications for this decision include the lack of consensus within the functional imaging community on criteria for quality assurance, and the utility of ‘lower quality’ datasets for facilitating the development of artifact correction techniques.
a multidimensional construct covering attention checks, scale reliability, and recoverable experimental effect sizes
bosch2019-online-panels-social-science-research
Our definition of data quality was multi-faceted. We examined not only the pass rate of attention checks, but also the internal reliabilities of validated scales, and the effect sizes of several classic psychological phenomena including the impact of gain versus loss framing (Tversky & Kahneman, 1981 ), the impact of anchors on numeric estimates (Jacowitz & Kahneman, 1995 ), and differences in mor
The cases that contain most of the defining attributes but not all of them are called borderline cases
ananzeh2026-moral-distress-family-caregivers
examples that contain most of the defining attributes but not all of them
timoteo2024-legacy-end-of-life-care
examples, which comprise almost all the aspects of a given concept, but with one attribute that differs substantially from that conceptual framework
hou2022-violence-against-nurses-emergency
include most of the defining attributes of a concept but lack one or more key characteristics
zhang2026-digital-social-prescribing-concept
scenarios that demonstrate some, but not all, attributes of eco-conscious nursing practices
shaban2024-eco-conscious-nursing
not defined in this paper's own words; conditional probability that an association rule holds
mossong2008-social-contacts-mixing-infectious-disease
Selecting interesting rules from the set of all possible rules is based on various measures of significance and interest. The best-known are support, confidence, and lift. The support of an association rule X → Y is defined as the relative frequency of X ∩ Y . Finding rules with high support can be seen as a simplification of the learning problem called “mode finding” or “bump hunting.” The confid
not defined in this paper's own words; proximal product of practice with feedback
lewis2018-classification-causality-implementation-mechanisms
Proximal outcomes are direct, measurable, and typically observable, products of the implementation strategy that occur because of its specific mechanism of action. That is, affecting a proximal outcome in the intended direction can confirm/disconfirm activation of the putative mechanism, offering a low-inference way to establish evidence for a theorized mechanism. Most often, mechanisms themselves
not defined in this paper's own words; the one C the existing validated measures were built around, and the reason the paper is titled `Beyond confidence`
betsch2018-beyond-confidence-development-of-a
Existing validated measures assessing vaccine hesitancy focus primarily on confidence in vaccines and the system that delivers them. However, empirical and theoretical work has stated that complacency (not perceiving diseases as high risk), constraints (structural and psychological barriers), calculation (engagement in extensive information searching), and aspects pertaining to collective responsi
a calibrated probability between zero and one benchmarked against KEGG, and separately a three-grade label (high, medium, exploratory) shown to users; one word for a number and for a verbal band
szklarczyk2022-string-database
All protein–protein association evidence in STRING is assessed and quantified, and its correspondence to the above definition is benchmarked against common membership in KEGG pathway maps (excluding maps that are largely based on homology, such as ‘ABC transporters’). The result of this benchmarking/calibration is a STRING ‘confidence score’ for each association; confidence scores are scaled betwe
a graded metacognitive judgment about the correctness of a completed choice
rollwage2018-metacognitive-failure-radical-beliefs
Participants were rewarded according to the extent to which confidence ratings tracked their objective performance over 60 trials and were thus incentivized to report their confidence as accurately as possible.
not defined in this paper's own words; abbreviation for support vector machine
daina2017-swissadme-free-web-tool
SwissADME enables the estimation for a chemical to be substrate of P-gp or inhibitor of the most important CYP isoenzymes. We applied the support vector machine algorithm (SVM) 51 on meticulously cleansed large datasets of known substrates/non-substrates or inhibitors/non-inhibitors (for details, see Computational Methods ). In similar contexts, SVM was found to perform better than other machine-l
support vector machine
jeantet2020-multi-sensor-loggers-sea-turtle-behaviour
not defined in this paper's own words; descriptor-based support vector model
jiang2021-graph-neural-networks-molecular-representation
The present study attempts to give a comprehensive evaluation of descriptor-based and graph-based models on 11 public datasets with different property endpoints. Four ML algorithms were used to develop the descriptor-based models, including SVM, extreme gradient boosting (XGBoost), RF and deep neural networks (DNN). In order to better represent the chemical and structure features of the molecules
As a complement to the ideal observer ROC analysis, we trained a linear support vector machine (SVM) classifier to decode texture graininess and texture omission from single-trial population activity, on a frame by frame basis. This simple readout model could effectively decode texture graininess and texture omission during the touch-stimulus window with about 55% and 70% accuracy, respectively (Fig. 4E ). The decoding accuracy was improved when the mean of the touch-stimulus window was used (60.1 ± 3.1% for texture graininess; 73.1 ± 4.3% for texture omission).
Mohan2018-sensory-representation-of-an-auditory-cued-t
a classifier or regressor seeking a maximum-margin hyperplane, with a kernel for nonlinear spaces
jiang2021-graph-neural-networks-molecular-representation
SVM is one of the most popular ML approaches and it is appropriate for both classification and regression [ 9 , 49 , 50 ]. It is also capable of dealing with both linearly separable and linearly inseparable problems. For linearly inseparable feature space, the kernel trick is needed to map the original feature space onto a new higher separable linear space. The basic objective of SVM is to find th
the right to alter one's mental states with neurotools and to refuse coercive alteration
ianca2017-new-human-rights-neuroscience-neurotechnology
A first, essential step towards the creation of a neuro-oriented human rights framework has been the recent debate over the notion of cognitive liberty. According to Bublitz ( 2013 ), this complex notion, often also referred to as mental self-determination , comprises two fundamental and intimately related principles: (a) the right of individuals to use emerging neurotechnologies; (b) the protecti
not defined in this paper's own words; mental self-determination concerning neurotechnology
schleim2021-neurorights-history-brain-control
As already stated in the introduction, the four main neurorights are: (1) cognitive liberty; (2) mental privacy; (3) mental integrity; and (4) psychological continuity. The first, sometimes also called the right to mental self-determination, has two aspects: access to neurotechnologies and protection against their coercive and unconsented use; cognitive liberty is also considered the most fundamen
not defined in this paper's own words; positive and negative mental self-determination
ienca2021-on-neurorights
As we have seen earlier, cognitive liberty was a precursor to the neuro-rights debate. Albeit there are differences in its formulation, there is a general consensus in the literature that cognitive liberty entails a person’s autonomous, unhindered control over their mind. This is well-captured by Bublitz’s (2013) use of cognitive liberty as a synonym for “mental self-determination.” According to B
the right and freedom to control one's consciousness and thought processes
ienca2021-on-neurorights
A pioneering step toward neurorights was marked by Boire’s (2001) and Sententia’s (2004) work on the notion of “cognitive liberty” in the early 2000s. Sententia ( 2004 , p. 227) defined cognitive liberty as “the right and freedom to control one’s own consciousness and electrochemical thought process.” It should be noted that this field of ethical-legal enquiry has emerged in full continuity with t
not defined in this paper's own words; group-emergent intelligence
danaher2020-internet-cognitive-enhancement
Since the birth of Web 2.0, the participatory and collaborative nature of the online realm has enabled the emergence of new forms of collective intelligence. The notion of collective intelligence (CI) is based on the idea that intelligence emerges not only from individual human brains but also from groups of people. The most interesting forms of applied collective intelligence for our purposes are
not defined in this paper's own words; the optimistic account of networked information production contrasted with pervasive rumors
bessi2015-science-conspiracy-misinformation
The large availability of user provided contents on online social media facilitates people aggregation around shared beliefs, interests, worldviews and narratives. In spite of the enthusiastic rhetoric about the so called collective intelligence unsubstantiated rumors and conspiracy theories—e.g., chemtrails, reptilians or the Illuminati—are pervasive in online social networks (OSN). In this work
not defined in this paper's own words; larger problem-solving agent composed from competent subagents
levin2022-technological-approach-mind-everywhere
Every intelligence is a collective intelligence, and the modular, multi-scale architecture of life means that we are a holobiont in more than just the sense of having a microbiome ( Chiu and Gilbert, 2015 )—we are all patchworks of overlapping, nested, competing, and cooperating agents that have homeostatic (goal-directed) activity within their self-constructed virtual space at a scale that determ
a group's ability to solve diverse problems beyond its most intelligent individual member
momennejad2021-collective-minds-network-topology
Wooley and colleagues define collective intelligence as the above-mentioned collective's ability to solve a diverse set of tasks and problems beyond the ability of the most intelligent members of the collective [ 50 , 51 ]. They have conducted a number of studies investigating how the composition and diversity of teams can enhance its measurable collective intelligence and help achieve optimal goa
protection against neurotechnological alteration of psychological processes
schleim2021-neurorights-history-brain-control
As already stated in the introduction, the four main neurorights are: (1) cognitive liberty; (2) mental privacy; (3) mental integrity; and (4) psychological continuity. The first, sometimes also called the right to mental self-determination, has two aspects: access to neurotechnologies and protection against their coercive and unconsented use; cognitive liberty is also considered the most fundamen
not defined in this paper's own words; protection from harmful mental manipulation
ienca2021-on-neurorights
A strong conceptual convergence is also recognizable with regard to mental integrity. As we saw earlier, the right to mental integrity is enshrined in the EU’s Charter of Fundamental Rights (Article 3). However, there are differences on how this right is interpreted. Ienca and Andorno (2017b) defined the neuroright to mental integrity as the right of individuals to be protected from illicit and ha
not defined in this paper's own words; protection from harmful neural alteration
ianca2017-new-human-rights-neuroscience-neurotechnology
This reconceptualized right should provide a specific normative protection from potential neurotechnology-enabled interventions involving the unauthorized alteration of a person’s neural computation and potentially resulting in direct harm to the victim. For an action X, to qualify as a threat to mental integrity, it has to: (i) involve the direct access to and manipulation of neural signaling (ii
protection of the mental dimension from unauthorized harmful neural intervention
ianca2017-new-human-rights-neuroscience-neurotechnology
We propose to fill this normative gap by calling for a reconceptualization of the right to mental integrity. In fact, while the ECHR and the EU Charter of Fundamental Rights consider mental integrity as a right to mental-health, pendant of the right of physical integrity understood as physical health, a more complex dimension of mental integrity is elicited by neurotechnology. Mental integrity in
unintentionally made false information
allily2018-public-temper-rumours-ethnography
not defined in this paper's own words; claim contradicting current expert evidence
sell2020-ebola-misinformation-social-media
The spread of misinformation has become an important global issue. Misinformation contradicts the best expert evidence available at the time and can lead to individual misperception or “factual beliefs that are false or contradict the best available evidence in public domain.” [ 1 , 2 ] The emergence of new communication platforms and access-enabling technology, such as social media and cell phone
not defined in this paper's own words
rathje2022-social-media-vaccine-hesitancy
While our results are consistent with the theory that exposure to misinformation and partisan cues in one's online social network influences vaccine attitudes, they are also consistent with other interpretations
Misinformation, that is, information that people accept as true despite it being false, can have significant societal consequences.
cook2017-neutralizing-misinformation-through-inoculation-exposing-misleading-arg
not defined in this paper's own words; intentional capacity for responsible ethical action
de-cremer2023-ai-tools-organizational-ethics
When we expect that AI systems will be ethical decision-makers in organizations, we are ultimately expecting that these systems would be able to reason, think and make judgment calls about the most morally appropriate course of action, across a wide range of managerial contexts (Mittelstadt, 2019 ; De Cremer, 2022 ). Crucially, given that organizations operate in a volatile, uncertain, complex, an
not defined in this paper's own words; autonomy and sentience supporting responsibility
fritts2022-doctors-ai-human-responsibility-artificial-risks
If deliberative normality (autonomy)+self-consciousness (sentience)=human moral agency ( responsible although caused will), then said “moral agency” is not applicable to an AI system. In the face of an adverse event caused by an AI system, there is no reason that justifies an attribution of responsibility to the artifact. The imputation would have not any communicative meaning towards society. No
not defined in this paper's own words; causal impact, functional ethical action, or responsible reasons-guided conduct
cervantes2021-moral-zombies-algorithms-agents
Of course, different authors mean different things when referring to moral agency. A dominant way of categorising moral agency in the AI literature is that of James H. Moor ( Moor 2009 ). He proposes four categories of ethical agency: (1) ethical impact agents (agents whose actions have ethical consequences; most or all autonomous systems count as ethical impact agents); (2) implicit ethical agent
capacity associated with blame rather than being the object of concern
gervais2016-belief-god-analytic-thinking-mentalizing-morality
We broadly characterize the social deficit associated with psychopathy as a deficit in moral concern [ 24 ]. The concept of moral concern is motivated by a basic distinction in moral philosophy between moral patiency and moral agency, which are associated with distinct moral sentiments of concern and blame, respectively [ 43 ]. Work in psychology also supports the view that perceptions of moral pa
not defined in this paper's own words; eligibility for praise or blame
bertolini2022-robots-ai-legal-subjects
According to the traditional philosophical discourse based on Aristotleian ethics ( Aristotle, 1985 ), moral responsibility is the state which characterizes the subject whose actions are judged as worthy of praise or blame ( Eshleman, 2016 ).
not defined in this paper's own words; being answerable, and open to blame or praise, for what one does or is
rise2019-addiction-moral-responsibility
A key concept in the discourse about addiction is the question about moral responsibility (see e.g., Morse, 2004 ; Foddy, 2011 ; Levy, 2011 ; Uusitalo, 2011 ).
not defined in this paper's own words; deserving blame or punishment for what one did
hannikainen2019-determinism-moral-responsibility
To evaluate this prediction, we averaged blame and punishment ratings to form an index of moral responsibility (Cronbach’s α = 0.86), and tested whether attributions of control statistically mediate the difference in moral responsibility ascription across scenarios.
answerability for guiding conduct according to morality and being a proper target of praise or blame
cervantes2021-moral-zombies-algorithms-agents
Michael McKenna understands morally responsible agency as ‘accountability for guiding conduct in accord with the demands of morality’ (2013: 206). Accountability is intimately related to notions of moral blameworthiness and praiseworthiness. According to Arpaly, ‘any agent who is morally praiseworthy or blameworthy for her action is, by definition, at least somewhat morally responsible for that ac
not defined in this paper's own words; pleasure from smooth stimulus processing
mencke2019-atonal-music-uncertainty-pleasure
Learning mechanisms would facilitate stimulus perception and processing, allowing appreciation to arise from ‘processing fluency,’ the notion that enjoyment of art can result from smooth processing ( Reber et al., 2004 ).
not defined in this paper's own words; ease of processing that can enhance positive affect
menninghaus2017-measuring-aesthetic-emotions
Finally, epistemic emotions include not only those linked to searching for meaning, but also emotions resulting from the satisfaction of a drive for sense-making or knowledge (cf. [ 31 , 119 , 120 ]), such as the feeling of insight or knowing [ 31 ]. The emotional state of feeling inspired (which is included in some measures in Table 1 ) is linked to felt insight. Inspiration, and specifically the
not defined in this paper's own words; ease of processing that raises positive evaluation
mastandrea2019-art-wellbeing-aesthetic-emotion
In processing fluency theory of beauty , the more fluently the perceiver can process an object, the more positive the aesthetic response ( Reber et al., 2004 ).
the ease of processing that optimising colour-odour congruency affords, invoked to explain the value of congruent colour cues in marketing communications
olfactory-colour-crossmodal-correspondences
Optimising colour-odour congruency likely makes sense from the point of view of processing fluency (e.g. Barkat, Thomas-Danguin, Bensafi, Rouby, & Sicard, 2003 ; Kim, 2008 , 2013 ; Lunardo & Livat, 2016 ; Schifferstein & Howell, 2015 ; see also Porcherot, Delplanque, Gaudreau, & Cayeux, 2013 ; Scharf & Volkmer, 2000 ; Togawa, Park, Ishii, & Deng, 2019 ). Note that this is not only achieved by the
not defined in this paper's own words; competition for finite attention under information abundance
lorenz-spreen2019-accelerating-collective-attention
The resulting picture is an attention economy 11 , where the increasing abundance of information combined with the cognitive limitations and time constraints of users, leads to a redistribution of the available resources across time towards more rapid changes and higher frequencies.
not defined in this paper's own words; allocation of limited attention among competing information stimuli
wu2015-production-information-attention-economy
An overwhelming amount of information stimuli compete for our cognitive resources, giving rise to the economy of attention 6 , first theorized by Simon 7 .
management and monetization of scarce human attention as consumption time and behavioral data
williams2020-struggle-human-attention
Attention, understood as the time of consumption, is valuable data, as it serves to predict and guide future behavior. Therefore, capturing the user’s attention is the main objective of digital platforms and defines the field of action of the economy of attention. It is “an economic project that reflects the mutation of a new capitalism” [ 2 ] centered on the domination and control of the cognitiv
events or results that occur after the concept
timoteo2024-legacy-end-of-life-care
events that can occur as a result or outcome of a concept
alshakhshir2024-spiritual-competence-nursing
events that occur as a result of the concept
ostaszkiewicz2020-dignity-protective-continence-care
the events that happen as a result or outcome of the concept
ananzeh2026-moral-distress-family-caregivers
events or incidents that are the result of the occurrence of a concept [ 17 ]
cao2023-nursing-professionalism-concept
events or phenomena that result from the concept
smith2020-rapid-implementation
events that are the results of the mobilization of the concept
gartner2022-patient-centered-care-pathway
those events or incidents that appear as results of the concept
sun2022-psychological-birth-trauma
the consequences define what happens as a result of the concept of interest
hillman2020-medication-experience-concept
those events that occur because of the concept occurring
timmins2024-moral-distress-student-nurses
Consequences are the events or incidents that may arise because of the occurrence of a concept
monteiro2025-spiritual-awakening-concept
events or incidences that occur as a result of the occurrence of the concept
balaam2017-migrant-women-pregnancy
the results of the occurrence of the concept
motsaanaka2022-clinical-learning-opportunity
events that must occur as a result
hughes2018-public-involvement-concept-analysis
the events or situations that arise because of the realization of the concept
kehyayan2025-value-based-healthcare-concept
events or incidents that result from the occurrence of the concept; they are the outcomes of the concept
shin2020-community-health-outreach
the results of corresponding events or phenomena ( Rodgers, 2000 )
liang2022-social-isolation-cancer-concept
the outcomes of the concept that are determined by the antecedents
menassa2023-healthy-ageing-concepts-definitions
Consequences are the outcomes of the concept
larsson2023-feeling-safe-perioperatively
outcomes that follow the emergence of a concept
muswede2026-political-astuteness-nurse-leadership
what happens because of a concept
pryor2026-adult-social-care-nursing-concept
the outcomes and effects associated with hope
antunes2023-hope-in-nursing-care
the outcomes or events that arise as a result of a particular concept, either as direct effects or follow-up results
pereira2024-positive-nursing-practice-environment
refer to the results produced by the implementation or development of a certain concept
zhang2026-digital-social-prescribing-concept
the outcomes or effects that arise from the application of sustainability principles within the nursing profession
shaban2024-eco-conscious-nursing
consequences are the results of a phenomenon
gwon2018-impressionability-concept
not defined in this paper's own words; a positive aesthetic property coevolving through positive sensory engagement; the default aesthetic property of art
coevolutionary-aesthetics-in-human-and-biotic-artworlds
In the broadest sense, beauty is a positive aesthetic property that coevolves through positive sensory engagement of an evaluator. Thus, an aesthetic stimulus is beautiful if it engages the receiver within its own artworld through a positive, coevolved aesthetic experience. By positive, I mean that an aesthetic experience of beauty leads to associational behavior—the desire for continued associati
not defined in this paper's own words; mutable subjective aesthetic experience
conway2013-neuroaesthetics-trouble-beauty
Inspired by the power of polling, in 1994 a pair of artists, Komar and Melamid, set out to determine “USA's most wanted painting.” The painting was formulated on the basis of a thousand people's responses to questions of their favorite color, favorite setting, and favorite subjects. The resulting painting is absurd, showing that a composition with everything that people find beautiful does not mak
not defined in this paper's own words; a surface-level rating of how aesthetically pleasing an image is
humans-versus-ai-whether-and-why-we-prefer-human
Importantly, each image was presented in random order and had individual-level randomization of a label of “human-created” or “AI-created.” In other words, different labels were assigned to different images across participants. Thus, on average, participants were presented 15 images with an AI label, and 15 images with a human label, even though all images were in fact AI-created. 1 Participants w
not defined in this paper's own words; culturally and contextually variable rating dimension
specker2022-expertise-culture-visual-art-appreciation
An important point of consideration is the multi-dimensional nature of aesthetic ratings. For instance, how “beauty” is defined may differ between cultures, and liking something because one feels a sense of national/cultural identity may be different to liking something that feels exotic. That is, even with similar Likert ratings for liking, the aesthetic experience of Indians when liking an India
not defined in this paper's own words; the manipulated feature: a beautiful vs an ordinary-looking object
the-folk-concept-of-art
We explored peoples’ concept of art in a 2 (intention: intentional v. accidental creation) × 2 (beauty: beautiful v. ordinary-looking) × 2 (institutional recognition: present v. absent) between-subjects study. There were thus 8 conditions in total, to one of which participants were randomly assigned. The scenarios were composed of the following elements (labels in bold excluded, stating either the
a culturally mutable and context-sensitive experience lacking a universally accepted definition
conway2013-neuroaesthetics-trouble-beauty
Insofar as beauty is a product of the brain, correlations between brain activity and experiences of beauty must exist. At what spatial scale, and within what brain regions, do we find these correlations? What functions do the brain regions implicated serve in other behaviors? What signals during development and experience are responsible for wiring up these circuits? And perhaps most critically, h
a review using explicit systematic methods to collate and synthesize studies addressing a formulated question
page2021-prisma-systematic-review-reporting-guideline
Systematic review —A review that uses explicit, systematic methods to collate and synthesise findings of studies that address a clearly formulated question 43
Systematic reviews and meta-analyses have become increasingly important in health care
moher2009-prisma
A systematic review is a review of a clearly formulated question that uses systematic and explicit methods to identify, select, and critically appraise relevant research, and to collect and analyze data from the studies that are included in the review.
moher2009-prisma
not defined in this paper's own words; the method this review states it is not
trenerry2021-preparing-workplaces-for-digital-t
Our review is broad in scope and integrates qualitative and non-qualitative studies using varying research designs rather than being a systematic review. We opted for this targeted approach as the field of digital transformation is multi-disciplinary and still in its nascent stages, thus limiting the potential and usefulness of systematic reviews and meta-analyses.
not defined in this paper's own words; the pre-RCT study that is NOT a feasibility study, because it asks whether the trial is necessary rather than whether it is possible
eldridge2016-defining-feasibility-and-pilot-stu
Within our framework, some important studies conducted in advance of a future RCT to evaluate the effect of a therapy or intervention are not feasibility studies. For example, a systematic review, usually an essential pre-requisite for such an RCT, normally addresses whether the future RCT is necessary or desirable , not whether it is feasible .
wounds that fail to heal because they are stalled in an early inflammatory state
krzyszczyk2018-the-role-of-macrophages-in-acute-and
The wound healing process and chronic vs. acute wounds Chronic wounds fail to heal, despite the use of current therapies, because they are stalled in the early inflammatory state within the wound healing stages (Zhao et al., 2016 ).
Wounds that fail to heal (defined as generally remaining unhealed after 12 weeks) are termed chronic wounds.
wilkinson2020-wound-healing-cellular-mechanisms-and-pathological-outcomes
are not able to achieve optimal anatomical and functional integrity
tottoli2020-skin-wound-healing
wounds that fail to proceed through the normal phases of wound healing in an orderly and timely manner - a definition by failure, with no timescale
frykberg2015-challenges-in-the-treatment-of-chr
Chronic wounds are defined as wounds that fail to proceed through the normal phases of wound healing in an orderly and timely manner.
not defined in this paper's own words; model connecting observations to hidden causes
constant2024-narrative-active-inference
Active inference emerged from predictive processing , an umbrella term referring to several related approaches to modeling brain function (e.g., Rao and Ballard, 1999 ; Clark, 2015 ). The basic assumption in these approaches is that the brain uses predictive coding algorithms to process sensory information more efficiently. These algorithms are more efficient because they limit information process
not defined in this paper's own words; Bayesian causal architecture entailed by an agent
constant2021-representation-wars-active-inference
Active inference assumes that the brain entails 1 a causal model of the world (a.k.a. a generative model), whose structure represents the components involved in the cognitive function of interest, as well as the dynamics that realize that cognitive function. Formally, these components and dynamics are expressed as a Bayesian graphical model, with nodes and edges representing the dynamic relations
not defined in this paper's own words; model whose likelihood is bounded by the denoising objective
voulodimos2018-deep-learning-for-computer-vision
The denoising autoencoder \ [56\] is a stochastic version of the autoencoder where the input is stochastically corrupted, but the uncorrupted input is still used as target for the reconstruction. In simple terms, there are two main aspects in the function of a denoising autoencoder: first it tries to encode the input (namely, preserve the information about the input), and second it tries to undo t
a model of hidden causes capable of producing candidate instances of observed data
williams2018-predictive-processing-representation-wars
A generative model represents the hidden, interacting causes (the latent variables) responsible for generating some data set, and can induce candidate instances of that data for itself based on its generative assumptions (Danks 2014 , 44; Hinton et al. 1995 ). This is the data expected given its model structure and parameters: its representation of the causal matrix currently responsible for its i
not defined in this paper's own words; reference segmentation against which algorithmic results are compared
mcquin2018-cellprofiler-next-generation-image
We developed 3D pipelines to identify cells and subcompartments of cells for a number of experimental situations and sample types across a number of laboratories. We identified nuclei based on a DNA stain ( Fig 1A ) in 3D image stacks of human induced pluripotent stem cells (hiPSCs). After processing by several CellProfiler modules ( Fig 1C ), the final results agree well with manually annotated n
not defined in this paper's own words; labelled training data required by CNNs
voulodimos2018-deep-learning-for-computer-vision
Some of the strengths and limitations of the presented deep learning models were already discussed in the respective subsections. In an attempt to compare these models (for a summary see Table 2), we can say that CNNs have generally performed better than DBNs in current literature on benchmark computer vision datasets such as MNIST. In cases where the input is nonvisual, DBNs often outperform othe
not defined in this paper's own words; the known answer, which exists for gain in simulation and NOT for PSP and NOT in real data
Spivak2022-deconvolution-improves-the-detection-and-qua
3c , since no ground truth for PSP exists in the point process simulations.
not defined in this paper's own words; the underlying source data that the model seeks to remain close to
johnson2016-mimic-iii-critical-care-database
Developing the MIMIC data model involved balancing simplicity of interpretation against closeness to ground truth. As such, the model is a reflection of underlying data sources, modified over iterations of the MIMIC database in response to user feedback. Table 4 describes how data is distributed across the data tables. Care has been taken to avoid making assumptions about the underlying data when
high-quality images the reconstruction is checked against, which the denoising method itself does not need
hajiabadi2022-deep-learning-microscopy-reconstruction
A dilemma arises, where the effective application of deep learning networks can only proceed without acquisition of ground truth data, but ground truth data are required to assure the experimenter that reconstruction is error-free.
the paper states there is none for inferred cell-cell communication, then uses three surrogates in its place (overlap with other tools, top-ranking by another tool, and spatial adjacency), so 'accuracy' in this field names agreement, not correspondence
jin2021-cellchat
Although we found CellChat’s predictions can recapitulate known biology to a substantial degree, systematic evaluation of predicted cell–cell communication networks is challenging due to the lack of ground truth 7 . Here we employed three strategies to compare the performance of different computational methods. First, we reason that a more accurate method will have a larger proportion of overlappe
information environment exposing people only to like-minded sources
kozyreva2020-citizens-internet-cognitive-tools
Algorithms are designed by human beings, and they rely on existing data generated by human beings. They are therefore likely not only to generate biases because of technical limitations but also to reinforce existing biases and beliefs ( Bozdag, 2013 ), which in turn can deepen ideological divides and exacerbate political polarization. Along the same lines, it has been argued that personalized fil
not defined in this paper's own words; homogeneous community supporting a shared narrative
bessi2016-user-polarization-facebook-youtube
The aggregation of users around conflicting narratives lead to the emergence of echo chambers. Once inside such homogeneous and polarized communities, users supporting both narratives behave in a similar way, irrespective of the platform and content promotion algorithm.
not defined in this paper's own words; like-minded group reinforcing a shared narrative
bakshy2020-selective-exposure-facebook-news-diet
Selective exposure may lead to the emergence of echo chambers [ 19 , 20 ]—i.e. groups of like-minded people cooperating to frame and reinforce a shared narrative—thus facilitating fake news and more generally misinformation cascades [ 21 , 22 ]. This is especially valid when considering the way in which we have shifted from a paradigm where information was supplied by few official news sources med
a closed network of like-minded people that reinforces beliefs and limits opposing views
danaher2020-internet-cognitive-enhancement
The fact that most information curation services deliver personalized information to each individual user, tailored to suit their pre-existing beliefs and preferences, produces concerns connected to echo chambers. Echo chambers are closed systems of like-minded people that have the effect of amplifying and reinforcing users’ beliefs, while isolating them from opposing views. This happens because i
like-minded group sharing and polarizing around the same narrative
bessi2016-user-polarization-facebook-youtube
The diffusion of social media caused a shift of paradigm in the creation and consumption of information. We passed from a mediated (e.g., by journalists) to a more disintermediated selection process. Such a disintermediation elicits the tendencies of the users to a) select information adhering to their system of beliefs—i.e., confirmation bias—and b) to form groups of like minded people where they
This state, characterized by an imbalance between ROS production and elimination by the antioxidant system in favor of ROS formation, is termed oxidative stress (Sies 2023 ).
jomov2024-several-lines-of-antioxidant-defense-against-oxidative
an imbalance between the production of reactive oxygen species (ROS) and their elimination by protective mechanisms
hussain2016-oxidative-stress-polyphenols
not defined in this paper's own words; cell damage from an excess of reactive oxygen species
lou-franco2020-gold-nanozymes-concept
This might be caused by small-sized AuNPs which have shown unusual chemical reactivity, especially under 2 nm in diameter, leading to oxidative stress and mitochondrial damage that trigger necrosis [ 53 ].
defined in the abstract as an imbalance of production and elimination, and in the introduction as excessive production the antioxidant system cannot neutralize
hussain2016-oxidative-stress-polyphenols
Oxidative stress refers to the excessive production of reactive oxygen species (ROS) in the cells and tissues and antioxidant system cannot be able to neutralize them.
An imbalance between ROS production and elimination is termed oxidative stress, a critical factor and common denominator of many chronic diseases such as cancer, cardiovascular diseases, metabolic diseases, neurological disorders (Alzheimer’s and Parkinson’s diseases), and other disorders.
jomov2024-several-lines-of-antioxidant-defense-against-oxidative
not defined in this paper's own words; annotations about the primary ranges
lawrence2013-genomic-ranges-software
Every multi-element data structure in the IRanges suite supports the storage of per-element metadata: data about data. In this case, the metadata are the annotations, and the primary data are the ranges being annotated. This includes all of the data structures for storing ranges, such as IRanges, GRanges and GRangesList . The metadata are stored in a DataFrame with as many rows as there are elemen
not defined in this paper's own words; data about data whose role varies with the investigator's perspective
gentleman2004-bioconductor-open-software-development
Metadata are data about data and their definition depends on the perspective of the investigator. Metadata for one investigator may well be experimental data for another. There are two major challenges that we will consider. First is the evolutionary nature of the metadata. As new experiments are done and as our understanding of the biological processes involved increases the metadata changes and
not defined in this paper's own words; information about a dataset as a whole and its internal content
wilson2017-good-enough-practices-scientific-computing
Submit data to a reputable DOI-issuing repository so that others can access and cite it (1g) . Your data are as much a product of your research as the papers you write and just as likely to be useful to others (if not more so). Sites such as Figshare, Dryad, and Zenodo allow others to find your work, use it, and cite it; we discuss licensing in Section 3 below. Follow your research community's sta
not defined in this paper's own words; labels and descriptions associated with data
hoyer2017-xarray-labeled-arrays-datasets-python
Unlabeled, N-dimensional arrays of numbers (e.g., NumPy’s ndarray) are the most widely used data structure in scientific computing. However, they lack a meaningful representation of the metadata associated with their data. Implementing such functionality is left to individual users and domain-specific packages. As a result, programmers frequently encounter pitfalls in the form of questions like “i
not defined in this paper's own words; public descriptive layer within a Dataverse deposit
wilkinson2016-fair-guiding-principles-data-stewardship
Dataverse 7 : Dataverse is an open-source data repository software installed in dozens of institutions globally to support public community repositories or institutional research data repositories. Harvard Dataverse, with more than 60,000 datasets, is the largest of the current Dataverse repositories, and is open to all researchers from all research fields. Dataverse generates a formal citation fo
not defined in this paper's own words; type, shape, and strides interpreting array storage
harris2020-array-programming-numpy
The NumPy array is a data structure that efficiently stores and accesses multidimensional arrays 17 (also known as tensors), and enables a wide variety of scientific computation. It consists of a pointer to memory, along with metadata used to interpret the data stored there, notably ‘data type’, ‘shape’ and ‘strides’ (Fig. 1a ).
not defined in this paper's own words; what institutions actually publish - a shallow subset, because deeper description costs more than they have
lod2023-art-history
This leads institutions to publish only a subset of the available information, exposing minimal metadata (Doerr et al. 2010), which might prevent researchers from using the data and constrains them to conventional research methods.
Working memory represents a short-lasting on-line memory buffer that holds information relevant to ongoing tasks
Murray2015-parvalbumin-positive-interneurons-of-the-pre
the mechanisms and processes that hold the mental representations currently most needed for an ongoing cognitive task available for processing
oberauer2019-working-memory-attention
Memory “The term working memory refers to a brain system that provides temporary storage and manipulation of the information necessary for such complex cognitive tasks as language comprehension, learning and reasoning” ( Baddeley, 1992 ).
Camina2017-the-neuroanatomical-neurophysiological-and-p
not defined in this paper's own words; one of the functions attributed to the frontal regions shared by both task types, and to the frontoparietal network
Li2025-meta-analysis-of-fmri-studies-related-to-mat
This network’s involvement in attention, working memory, and goal orientation aligns with the demands of mathematical problem-solving.
not defined in this paper's own words; the active store that manipulates, rehearses and reinstates information, and interfaces with long-term memory
Nees2016-have-we-forgotten-auditory-sensory-memory-re
These “working” aspects of WM— active mental manipulation, rehearsal, and reinstatement of information— represent an important functional distinction between WM and ASM.
not defined in this paper's own words; summary label for hidden mechanisms inferred from behaviour
thomas2018-educational-neuroscience-progress-prospects
Yet there are risks in a pure psychology approach. Psychological theory infers hidden causal mechanisms to explain and predict observed behaviour. For example, it infers mechanisms such as ‘working memory’ and ‘attention’, which are then imbued with certain properties: working memory has a ‘limited capacity’; attention works like ‘a spotlight’ or enforces a ‘bottleneck’ on perception. What is the
“The term working memory refers to a brain system that provides temporary storage and manipulation of the information necessary for such complex cognitive tasks as language comprehension, learning and reasoning” ( Baddeley, 1992 ). At first (1974), they proposed the existence of three subsystems within the multi-storehouse model of short-term memory: the central executive, a phonological or articulatory loop and a visuospatial sketchpad.
Camina2017-the-neuroanatomical-neurophysiological-and-p
RMSE stands for root mean square error.
Ouellet2014-trajectory-of-the-main-gabaergic-interneuron
Root mean square error
noor2013-gibbs-energy-component-contributions, tustison2021-antsx-imaging-ecosystem
not defined in this paper's own words; regression error metric
jiang2021-graph-neural-networks-molecular-representation
According to the recommendations of MoleculeNet benchmarks [ 32 ], the classification models were evaluated by the area under the receiver operating characteristic curve (AUC-ROC) for the classification tasks except the maximum unbiased validation (MUV) dataset, which was evaluated by the area under precision-recall curve (AUC-PRC) due to its extreme biased data distribution. The regression models
To produce a closer fit to the AEF data we began by adjusting only the parameters defining the strength and timing of each input (all input parameters are displayed in Table 1 ), as well as the scale of the waveform. We first hand-tuned these parameters until there was visually close agreement between model and data, and subsequently used the automated parameter optimization feature in HNN to improve the model fit further. The optimization tool automatically adjusted parameters controlling input timing and strengths to minimize the error (root mean squared error; RMSE) between the simulated and empirical dipole waveforms
Kohl2022-neural-mechanisms-underlying-human-auditory
a dimensioned numerical-prediction error metric that heavily penalizes large errors
venter2016-global-terrestrial-human-footprint-maps
Two statistics were used to determine Human Footprint performance, root mean squared error (RMSE) 53 and the Cohen kappa statistic of agreement 54 . The RMSE is a dimensioned (expresses average error in the units of variable of interest) error metric for numerical predictions, and tends to heavily punish large errors. The Kappa statistic expresses the agreement between two categorical datasets cor
not defined in this paper's own words; the fit criterion, and the number that separates the rival mechanisms
Kohl2022-neural-mechanisms-underlying-human-auditory
However, this manipulation also impacted the subsequent P200m peak, which was significantly larger when the local connections to the inhibitory neurons were decreased due to increased pyramidal neuron firing (data not shown), and hence a larger RMSE between the model and recorded data were observed; RMSE = 7.84 compared to RMSE = 1.96 in Fig. 4 . Similarly, we found that the N100m amplitude decrea
an example of the concept that showcases all of the defining attributes
razaq2025-digital-health-equity-concept
an example of the use of the concept that demonstrates all the defining attributes of the concept
van-haeken2020-perinatal-resilience
an instance of a concept in which all defining attributes are demonstrated
teixeira2023-transcultural-nursing-leadership
a desirable case that includes the attributes of the concept of interest
oh2022-nurses-clinical-decision-making
contains all the necessary attributes of a concept
sun2022-digital-resilience-school-education
a paradigmatic exemplar that includes all defining attributes of the concept
gwon2018-impressionability-concept
a scenario that fully encapsulates all the defining attributes of the concept being analyzed
shaban2024-eco-conscious-nursing
includes all the defining attributes of a concept, thereby clearly demonstrating its existence
zhang2026-digital-social-prescribing-concept
a real-life example which includes all the defining characteristics
egan2021-transitioning-long-term-care-id
a composite scenario created by the authors to demonstrate the defining attributes identified in Step 4 of the analysis
muswede2026-political-astuteness-nurse-leadership
serves as a useful tool for illustrating the essential characteristics of a concept
pereira2024-positive-nursing-practice-environment
the ability to understand and share the feelings of others
kalantari2024-conscience-based-nursing-care
the ability to be affected by the emotional states of others
garciapelegrin2021-evolution-storytelling
Empathy is the ability to vicariously experience and understand the affect of other people.
Lockwood2022-distinct-neural-representations-for-prosocia
cognitive: understanding others' thoughts and states, which shows no relation to the same pattern
Lockwood2022-distinct-neural-representations-for-prosocia
We found that affective empathy was positively correlated with the strength of prosocial effort patterns in ACCg (Pearson’s r (36) = 0.39, p = 0.02), whereas cognitive empathy was not (Pearson’s r (36) = 0.05, p = 0.78, correlations significantly different t = 2.04, p = 0.02).
reinforces one’s ability to understand and share the feelings of a customer by placing themselves in their shoes
liu2020-online-food-shopping
the process by which an observer comes to understand and feel what others are experiencing
huron2020-enjoyment-sad-music
a multidimensional capacity including mentalizing and emotional sharing
pino2016-literary-fiction-mentalizing
Empathy is the capacity to share the physiological and emotional states of other people [ 1 , 2 , 3 ]. Empathy has been recently described as including two dimensions: mentalizing and emotional sharing [ 4 – 7 ]. Mentalizing is the ability to understand what others are thinking or feeling, while the emotional sharing dimension includes the capacity to emotionally resonate with other people’s feeli
affective: resonating with the affect of others, and the only component that tracks the ACCg prosocial effort pattern
Lockwood2022-distinct-neural-representations-for-prosocia
An important distinction is often made in the literature between “affective empathy,” resonating with the affect of others, and “cognitive empathy,” understanding the thoughts and affective states of others.
cognitive recognition of others' emotions together with an emotional response, sympathy, and concern
bal2013-fiction-reading-empathy-emotional-transportation
Even though little research has been conducted on the effects of fiction reading on empathy, there are several researchers who have explained why fiction reading influences empathy. Mar and colleagues [6] , [7] , [21] argued that fiction reading may have profound effects on empathic skills of the reader. When an individual reads a story, emotions are triggered by that story, such that an affective
not defined in this paper's own words; the felt concern owed to a social agent, absent toward mere possessions
can-computers-create-art
I generalize this theory beyond humans to hypothesize: art is an interaction between social agents. A “social agent” is anything that has a status akin to personhood; someone worthy of empathy and ethical consideration. Many of our other behaviors are interactions between social agents, such as gifts, conversation, and social relationships like friendship, competition, and romance.
single cell RNA sequencing
mckenzie2018-brain-cell-coexpression-networks
single-cell RNA sequencing
dimitrov2022-cell-cell-communication-inference, li2020-deep-embedding-single-cell-clustering, reagor2023-pseudotime-lagged-causality
not defined in this paper's own words; abbreviation for single-cell RNA sequencing
zhang2020-cancer-immunotherapy-tumor-infiltrating-immune-cells
Single-cell protein analysis is a pivotal approach to understanding the phenotypic heterogeneity of TILs. Mass cytometry, or cytometry by time-of-flight (CyTOF), utilizing metal-isotope-labeled antibodies in combination with finely tuned mass spectrometry-based detection, enables simultaneous quantification of more than 40 proteins from millions of individual cells at low cost. 175 By contrast, sc
single-cell RNA sequencing used to profile individual-cell transcriptomes
lun2016-a-step-by-step-workflow-for-low
Single-cell RNA sequencing (scRNA-seq) is widely used to profile the transcriptome of individual cells.
`a broad class of techniques which profile the transcriptomes of individual cells`. Defined by what it profiles and at what resolution, not by any one protocol - which is why the QC parameters cannot be fixed
mccarthy2016-scater-pre-processing-quality-cont
Single-cell RNA sequencing (scRNA-seq) describes a broad class of techniques which profile the transcriptomes of individual cells.
single-cell RNA-seq
jew2020-bulk-expression-cell-composition-estimation
single-cell RNA-sequencing
vallejos2015-basics-bayesian-single-cell
Empirical referents in a concept analysis are ways in which the concept can be observed and measured.
hughes2018-public-involvement-concept-analysis
demonstrate the occurrence of a concept through its existence or presence
teixeira2023-transcultural-nursing-leadership
measurable indicators of the concept’s occurrence
carvalho2022-positive-mental-health-literacy
observable indicators that demonstrate the occurrence of the concept in the real world
kehyayan2025-value-based-healthcare-concept
classifications or categories; their presence determines the existence of the concept
motsaanaka2022-clinical-learning-opportunity
observable indicators that demonstrate the presence of a concept in practice
zhang2026-digital-social-prescribing-concept
ways to measure the concepts in the real world
konlan2024-clinical-readiness-nursing-students
classes or categories of actual phenomena that by their existence or presence demonstrate the occurrence of the concept itself
makhene2023-decolonisation-nursing-curriculum
classes or categories of actual phenomena that, by their existence or presence, demonstrate the occurrence of the concept itself
hua2025-demoralization-concept-analysis
measurable indicators or observable phenomena that embody this concept
shaban2024-eco-conscious-nursing
observable phenomena by which defining attributes are recognized
gartner2022-patient-centered-care-pathway
a way of recognizing or measuring the defining attributes of a concept, thereby determining its existence
larsson2023-feeling-safe-perioperatively
classes or categories of phenomena that provide evidence of the existence of that concept
hou2022-violence-against-nurses-emergency
proposes the standards by which to measure the concept
gwon2018-impressionability-concept
classes or categories of actual phenomena
shin2020-community-health-outreach
observable indicators that help identify a concept in practice
muswede2026-political-astuteness-nurse-leadership
a way to measure and recognise the concept of transitioning into long-term care for an older adult with an intellectual disability in both practice and research
egan2021-transitioning-long-term-care-id
measurable ways to demonstrate the occurrence of leadership in the study context
laukka2022-leadership-digital-health
provide an overview of the identified assessment tools related to the attributes aiming to make the concept, goal-oriented care, measurable
boeykens2022-goal-oriented-care
information literacy with regard to health topics
schulenkorf2021-school-health-literacy
not defined in this paper's own words; the capacity to find, judge and use information about one's health
zhang2025-physical-activity-health-literacy
Health literacy is categorized into three dimensions: functional, communicative, and critical health literacy
the ability of individuals to find, understand, and use health information to make informed health decisions
cho2025-digital-literacy-dementia-caregivers
comprising a broad range of knowledge and competencies
broder2019-child-youth-health-literacy
an individual’s ability to obtain, process, and understand basic health information and services necessary to make appropriate health decisions
jung2022-ehealth-literacy-older-adults
people’s knowledge, motivation and competences to access, understand, appraise, and apply health information
kuhne2021-prognostic-awareness
`people's knowledge, motivation and competences to access, understand, appraise, and apply health information in order to make judgments and take decisions in everyday life concerning healthcare, disease prevention and health promotion to maintain or improve quality of life during the life course`
sorensen2012-health-literacy-and-public-health
Health literacy is linked to literacy and entails people's knowledge, motivation and competences to access, understand, appraise, and apply health information in order to make judgments and take decisions in everyday life concerning healthcare, disease prevention and health promotion to maintain or improve quality of life during the life course . This definition encompasses the public health persp
entails people’s knowledge, motivation and competences to access, understand, appraise, and apply health information in order to make judgments and take decisions in everyday life
kirchhoff2022-organizational-health-literacy-schools
not defined in this paper's own words; the contested construct this paper synthesises a definition for
sorensen2012-health-literacy-and-public-health
It is important to distinguish health literacy from literacy in general. According to the United Nation Education, Science and Culture Organization (UNESCO) during its history in English, the word 'literate' mostly meant to be 'familiar with literature' or in general terms 'well educated, learned'. While maintaining its broader meaning of being knowledgeable or educated in a particular area, durin
DECLARED TO HAVE NO AGREED DEFINITION, AND THE CONSEQUENCE NAMED: `there is no consensus about the definition of health literacy or about its conceptual dimensions, which limits the possibilities for measurement and comparison.` The absence is not reported as untidiness - it is reported as the thing preventing the field from measuring anything.
sorensen2012-health-literacy-and-public-health
Although its importance is increasingly recognised, there is no consensus about the definition of health literacy or about its conceptual dimensions, which limits the possibilities for measurement and comparison
a product of situational requirements and individual attributes
broder2019-child-youth-health-literacy
a socio-cultural learning process, not a purely cognitive one
broder2019-child-youth-health-literacy
Therefore, we propose considering health literacy as a multifaceted socio-cultural learning process (and not a purely cognitive one), because it is built up through personal experiences and interactions within a given environment.
criticised as a top-down, expert-driven concept
broder2019-child-youth-health-literacy
Notably, health literacy has been criticized as being a ‘top-down’ or expert-driven concept [ 38 ].
Alternate phrases used to convey the concept are referred to as surrogate terms
cho2025-digital-literacy-dementia-caregivers
alternative terms of the chosen concept
tang2023-what-is-esports
can be used interchangeably to express concepts
duan2024-public-image-of-nursing
means of expressing a concept other than the word or expression selected by the researcher to focus the study
jung2022-ehealth-literacy-older-adults
words that express the ideas of a concept through words other than the concept that the researcher has chosen in his/her study
rahimi2024-saturation-qualitative-research
are synonymous and interchangeable with the concept of interest
van-wijk2022-public-opinion-leadership-nursing
technical synonyms: words or phrases that have the same meaning as a selected word or phrase
alshakhshir2024-spiritual-competence-nursing
use alternate words or terminology to express the concept under consideration
laranjeira2023-therapeutic-adherence-mental-disorders
terms in the literature that have similar meaning to the concept of interest and are often used interchangeably but have been named differently
hillman2020-medication-experience-concept
those that can be used instead of a concept
kangasniemi2023-nurses-collegiality
an example of the concept that has most of the defining attributes but not all of them
razaq2025-digital-health-equity-concept
an example that contains some but not all of the defining attributes of the concept
teixeira2023-transcultural-nursing-leadership
an instance of the concept containing some but not all of the attributes of the concept
sun2022-digital-resilience-school-education
an instance that contains most (but not all) of the defining attributes of the concept
zhao2021-compensatory-belief-health-behavior
contain most of the defining attributes but are inconsistent with the present concept
egan2021-transitioning-long-term-care-id
contains most of the defining attributes but not all of them
carvalho2022-positive-mental-health-literacy
the original CONSORT (Consolidated Standards of Reporting Trials) statement in 1996
schulz2010-consort
the Consolidated Standards of Reporting Trials statement, a minimum set of items for reporting a randomised trial
hopewell2025-consort-2025-statement-updated-guideline-for-reporting
The CONSORT (Consolidated Standards of Reporting Trials) statement was designed to improve the quality of reporting and provides a minimum set of items to be included in a report of a randomised trial.
published to improve the reporting quality of randomized controlled trials (RCTs)
mohler2015-credeci-2-guideline
not defined in this paper's own words; the trials checklist this one is modelled on - dated here as 1996 and revised five years later, which is the same chain schulz2010 continues in 2010
vonelm2007-strobe
Recommendations on the reporting of research can improve reporting quality. The Consolidated Standards of Reporting Trials (CONSORT) Statement was developed in 1996 and revised 5 years later [ 12 ]. Many medical journals supported this initiative [ 13 ], which has helped to improve the quality of reports of randomised trials
the 2001 version: the previous statement, whose item numbers survive into the new one
schulz2010-consort
Thirty one members of the CONSORT 2010 Group met in Montebello, Canada, in January 2007 to update the 2001 CONSORT statement.
the 2010 version: this paper plus its 25-item checklist and flow diagram, the three together being the statement
schulz2010-consort
The CONSORT 2010 Statement is this paper including the 25 item checklist in the table ( Table 1 ) and the flow diagram ( Figure 1 ).
Cultural competence is a set of congruent behaviours, attitudes, and policies that come together in a system, agency, or among professionals and enable that system, agency, or those professionals to work effectively in cross-cultural situations.
curtis2019-cultural-safety-rather-than-cultural
the ability of individuals to establish effective interpersonal and working relationships that supersede cultural differences by recognizing the importance of social and cultural influences on patients, considering how these factors interact, and devising interventions that take these issues into account [53] (p.2).
curtis2019-cultural-safety-rather-than-cultural
the ability of systems to provide care to patients with diverse values, beliefs and behaviours, including tailoring delivery to meet patients’ social, cultural, and linguistic needs [54] (p. v).
curtis2019-cultural-safety-rather-than-cultural
a complex know-act grounded in critical reflection and action, which the health care professional draws upon to provide culturally safe, congruent, and effective care in partnership with individuals, families, and communities living health experiences, and which takes into account the social and political dimensions of care [55] (p. 12).
curtis2019-cultural-safety-rather-than-cultural
not defined in this paper's own words; `a broad concept that has various definitions drawing from multiple frameworks`, with varying interpretations within and between countries
curtis2019-cultural-safety-rather-than-cultural
Cultural competency is a broad concept that has various definitions drawing from multiple frameworks. Overall, this concept has varying interpretations within and between countries (see Table 1 for specific examples).
trained recognition of cross-cultural expressions of illness and health used to counter patient marginalization
metzl2014-structural-competency-stigma-inequality
For much of the past two decades, “cultural competency” has been the rubric most often deployed in U.S. medical education for addressing the tensions of such moments of clinical encounter. Competency, in this formulation, implies the trained ability to identify cross-cultural expressions of illness and health, and to thus counteract the marginalization of patients by race, ethnicity, social class,
not defined in this paper's own words; the study of methods for bringing research findings into routine practice
waltz2015-concept-mapping-implementation
Concerns about poor consistency in implementation science (IS) terminology have led researchers to characterize the field as a “Tower of Babel” [ 1 ].
not defined in this paper's own words; the scientific study of methods for promoting systematic uptake of research findings and evidence-based practices into routine practice
nilsen2015-implementation-theories-models-frameworks
Implementation science is defined as the scientific study of methods to promote the systematic uptake of research findings and other EBPs into routine practice to improve the quality and effectiveness of health services and care [ 12 ].
the rigorous study of implementation
smith2020-rapid-implementation
not defined in this paper's own words; the field whose goals include identifying, developing and testing implementation strategies
powell2015-refined-compilation-implementation-strategies-eric
Identifying, developing, and testing implementation strategies are important goals of implementation science. However, these efforts have been complicated by the use of inconsistent language and inadequate descriptions of implementation strategies in the literature. The Expert Recommendations for Implementing Change (ERIC) study aimed to refine a published compilation of implementation strategy te
not defined in this paper's own words; the paper quotes another source, which describes it as studying how to design and assess activities that help evidence-based interventions get adopted
eslava-schmalbach2019-equity-implementation-research
This makes it very difficult to study it scientifically, which has motivated the progress of Implementation Science (IS) [ 3 , 6 ],
one research tradition under several names (knowledge translation research, improvement science, research utilization, delivery science, quality improvement), which the authors hold share far more than divides them, so one compilation is claimed for all of them
powell2015-refined-compilation-implementation-strategies-eric
a As Wensing et al. [ 51 ] note, the field of research focusing on “how to improve healthcare” has evolved under several different names ( e.g., implementation science, knowledge translation research, improvement science, research utilization, delivery science, quality improvement, etc.). While each of these traditions “bring their own nuances to the area…the reality is that there are far more com
not defined in this paper's own words; the units, besides sequences, that group tags apply to
tamura2021-mega11
MEGA has long supported a “group” tag for sequences and other operational taxonomic units (OTUs). Using the sequence “group” tags, MEGA offered a group-wise exploration of input data, selection of data subsets, and computational analyses ( Kumar 2001 ). Support for two new tags (“population” and “species”) was added in MEGA7, with the species tags used to mark duplicate genes in multigene family p
not defined in this paper's own words; clusters of sequence reads used as proxies for microbial populations
kurtz2015-spiec-easi-microbial-networks
First, the abundances of microbial operational taxonomic units (OTUs) from amplicon-based datasets are compositional.
not defined in this paper's own words; clusters of sequences at a set identity threshold
lagkouvardos2016-imngs-16s-rrna-profiles
All samples represent currently a total of 1.4 billion sequences that clustered into 53,696,442 sample-specific OTUs (operational taxonomic units).
not defined in this paper's own words; clusters of similar gene sequences used as stand-ins for microbial species
wilkins2019-dysbiosis-definition
Each individual harbors thousands of unique microbial operational taxonomic units (OTUs) 28 , 29 .
not defined in this paper's own words; similarity-clustered sequence units
mcmurdie2013-phyloseq-microbiome-analysis
Barcoded [2] amplicon sequencing of dozens to hundreds of samples [4] is a method of phylogenetic sequencing of microbiomes, often targeting the small subunit ribosomal RNA (16S rRNA) gene [3] , for which there are also convenient tools [5] and large reference databases [6] – [8] . The task of decoding the sample source of each sequence read by its barcode, followed by similarity clustering to def
not defined in this paper's own words; a cluster of reads differing by less than a fixed dissimilarity threshold, most commonly 3%
callahan2017-exact-sequence-variants-should-rep
The analysis of marker-gene data customarily begins with the construction of molecular operational taxonomic units (OTUs): clusters of reads that differ by less than a fixed sequence dissimilarity threshold, most commonly 3% ( Westcott and Schloss, 2015 ; Kopylova et al. , 2016 ).
not defined in this paper's own words; research whose results can be recreated from its computational record
wilson2014-best-practices-scientific-computing
Our practices are summarized in Box 1 ; labels in the main text such as “(1a)” refer to items in that summary. For reasons of space, we do not discuss the equally important (but independent) issues of reproducible research, publication and citation of code and data, and open science. We do believe, however, that all of these will be much easier to implement if scientists have the skills we describ
not defined in this paper's own words; code-and-seed-supported exact recreation of analyses
mcmurdie2014-rarefying-microbiome-data-inadmissible
Our results have substantial implications for past and future microbiome analyses, particularly regarding the interpretation of differential abundance. Most microbiome studies utilizing high-throughput DNA sequencing to acquire culture-independent counts of species/OTUs have used either proportions or rarefied counts to address widely varying library sizes. Left alone, both of these approaches suf
not defined in this paper's own words; goal of code-data report compendia
ritchie2015-limma-differential-expression
Being R-based, reports of limma analyses can be compiled using Sweave ( 77 ) or knitr ( 78 ) and provided along with the raw data in a compendium to promote reproducible research in genomics ( 79 ).
a minimum standard in which results and protocols permit repetition and extension of analyses on the original data
sandve2013-ten-simple-rules-reproducible-computational-research
Replication is the cornerstone of a cumulative science [1] . However, new tools and technologies, massive amounts of data, interdisciplinary approaches, and the complexity of the questions being asked are complicating replication efforts, as are increased pressures on scientists to advance their research [2] . As full replication of studies on independently collected data is often not feasible, th
not defined in this paper's own words; computational scholarship distributed with data, executable code, instructions, and readable outputs
gentleman2004-bioconductor-open-software-development
Thus we believe that R and Bioconductor can provide a start along the path towards generally reproducible research in CBB. The infrastructure in R that is used to support replayability and remote robustness analysis could be implemented in other languages such as Perl [ 39 ] and Python [ 40 ]. All that is needed is some platform-independent format for binding together the data, software and script
research whose analyses, tables and figures can be exactly recreated from accompanying data and software
mcmurdie2013-phyloseq-microbiome-analysis
In exploratory statistical work it is easy to produce biased results [73] through poorly chosen metrics or tests, a failure to properly control for multiple inferences, undisclosed data “pruning”, and probably many other means. Although not commonly required [74] – [76] , an important defense against biased (or poorly-supported) findings is a higher standard for reproducibility in published resear
not defined in this paper's own words
cheeseman2024-humpback-whale-population-modelling
It is notable that the end of the shift did not appear to occur from population growth but rather from a decrease in carrying capacity triggered by rapid climate change.
not defined in this paper's own words; anthropogenic stressor affecting marine systems
selig2014-global-priorities-marine-biodiversity-conservation
Widespread impacts of human activities on the oceans [1] continue to cause declines in species diversity and abundance [2] , [3] . As recognition of the benefits that healthy marine ecosystems provide to people increases [4] , [5] , protecting biodiversity and the essential ecosystem services it supports has become a priority for the scientific community, resource managers, and national and intern
not defined in this paper's own words; long-term change in climate
schleuning2016-ecological-networks-plant-extinction-climate
Impacts of climate change on individual species are increasingly well documented, but we lack understanding of how these effects propagate through ecological communities.
not defined in this paper's own words; long-term change in climatic conditions
radchuk2019-adaptive-responses-climate-change
Climate change can reduce the viability of species and associated biodiversity loss can impact ecosystem functions and services 1 – 3 .
not defined in this paper's own words; proposed driver rendered unlikely by measured variables in this study
hallmann2017-flying-insect-biomass-decline-protected-areas
In light of previously suggested driving mechanisms, our analysis renders two of the prime suspects, i.e. landscape [ 9 , 18 , 20 ] and climate change [ 15 , 18 , 21 , 37 ], as unlikely explanatory factors for this major decline in aerial insect biomass in the investigated protected areas. Habitat change was evaluated in terms of changes in plant species composition surrounding the standardized tr
not defined in this paper's own words; absent observations whose handling the report must explain
vonelm2007-strobe
Describe all statistical methods, including those used to control for confounding (b) Describe any methods used to examine subgroups and interactions (c) Explain how missing data were addressed (d) Cohort study—If applicable, explain how loss to follow-up was addressed Case-control study—If applicable, explain how matching of cases and controls was addressed Cross-sectional study—If applicable, de
not defined in this paper's own words; absent values or identifiers in routine sources
benchimol2015-record-routinely-collected-health-data
Missing data are problematic for all observational research and have been addressed in Box 6 of the STROBE explanatory article [ 10 ]. Missing data are a particular issue for routinely collected data, as researchers cannot control data collection [ 73 ]. Missing data can result in selection bias if there are missing values in variables used to define the study cohort or missing identifiers that pr
not defined in this paper's own words; missing values handled across xarray operations
hoyer2017-xarray-labeled-arrays-datasets-python
Missing Data: xarray smoothly handles missing data in all operations, including arithmetic, alignment and aggregation.
not defined in this paper's own words; samples ignored then interpolated by normalized convolution
astropycollaboration2018-building-open-science-project
The astropy.convolution subpackage implements normalized convolution (e.g., Knutsson & Westin 1993), an image reconstruction technique in which missing data are ignored during the convolution and replaced with values interpolated using the kernel. An example is given in Figure 4. In astropy versions ≤1.3, the direct convolution and Fast Fourier Transform (FFT) convolution approaches were inconsist
not defined in this paper's own words; unmeasured predictors or responses in ecological datasets
harrison2018-mixed-effects-modelling-ecology
When collecting ecological data it is often not possible to measure all of the predictors of interest for every measurement of the dependant variable. Such missing data are a common feature of ecological datasets, however the impacts of this have seldom been considered in the literature ( Nakagawa & Freckleton, 2011 ). Incomplete rows of data in dataframes i.e. those missing predictor and/or respo
not defined in this paper's own words; cross-sample confounding differences
ewels2016-multiqc-analysis-results
Motivation: Fast and accurate quality control is essential for studies involving next-generation sequencing data. Whilst numerous tools exist to quantify QC metrics, there is no common approach to flexibly integrate these across tools and large sample sets. Assessing analysis results across an entire project can be time consuming and error prone; batch effects and outlier samples can easily be mis
not defined in this paper's own words; systematic differences between data from different runs or technologies
wang2021-scgnn-graph-neural-network-single-cell
We also observed that the imputation of scGNN can decrease batch effects introduced by different sequencing technologies
not defined in this paper's own words; unexpected systematic sample patterns
ritchie2015-limma-differential-expression
After the pre-processing steps described above, the next major analysis stage is to identify differentially expressed genes. It is advisable to begin the DE analysis with a plot that visualizes the relative differences in transcriptional profile between the samples. The plotMDS function uses multi-dimensional scaling to plot differences in expression profiles between different samples (Figure 3C )
subtle confounding differences across expanding sample sets
ewels2016-multiqc-analysis-results
Advances in next-generation sequencing are leading to an avalanche of data. Whilst opening doors to new analysis types and experimental designs, expanding sample numbers make studies increasingly vulnerable to confounding batch effects ( Leek et al., 2010 ; Meyer and Liu 2014 ; Taub et al., 2010 ). Such biases are often subtle and difficult to detect and require careful quality control measures.
not defined in this paper's own words; free modular software system for automated cellular image analysis
carpenter2006-cellprofiler
CellProfiler, the first free, open-source system for flexible and high-throughput cell image analysis is described.
not defined in this paper's own words; open-source software for constructing reproducible biological-image-analysis pipelines
mcquin2018-cellprofiler-next-generation-image
CellProfiler has enabled the scientific research community to create flexible, modular image analysis pipelines since its release in 2005. Here, we describe CellProfiler 3.0, a new version of the software supporting both whole-volume and plane-wise analysis of three-dimensional (3D) image stacks, increasingly common in biomedical research. CellProfiler’s infrastructure is greatly improved, and we
open-source software for measuring and analyzing cell images through modular pipelines
mcquin2018-cellprofiler-next-generation-image
CellProfiler, our open-source software for measuring and analyzing cell images, has been cited more than 6,000 times, currently at a rate of more than 1,000 per year. The first version of CellProfiler was introduced in 2005 and published in 2006 [ 4 ]. It is widely adopted worldwide, enabling biologists without training in computer vision or programming to quantitatively measure phenotypes robustl
not defined in this paper's own words; open-source high-content image-analysis package
bankhead2017-qupath-open-source-digital-pathology
In recent years, a vibrant ecosystem of open source bioimage analysis software has developed. Led by ImageJ 3 , researchers in multiple disciplines can now choose from a selection of powerful tools, such as Fiji 4 , Icy 5 , and CellProfiler 6 , to perform their image analyses. These open source packages encourage users to engage in further development and sharing of customized analysis solutions i
Convolutional Neural Network
lao2017-deep-learning-radiomics-glioblastoma
convolutional neural network, a network with convolution operations
liu2021-plant-diseases-and-pests-detection-based-on
Convolutional neural network Convolutional Neural Networks, abbreviated as CNN, has a complex network structure and can perform convolution operations.
convolutional neural networks
tiulpin2018-knee-osteoarthritis-deep-learning
visual-system-inspired hierarchy of convolutional, pooling, and fully connected layers mapping an input volume to a feature vector
voulodimos2018-deep-learning-for-computer-vision
Convolutional Neural Networks (CNNs) were inspired by the visual system's structure, and in particular by the models of it proposed in \ [18\]. The first computational models based on these local connectivities between neurons and on hierarchically organized transformations of the image are found in Neocognitron \ [19\], which describes that when neurons with the same parameters are applied on pat
not defined in this paper's own words; verbal and nonverbal conveyance of information and emotion
bishop2016-catalise-language-impairments-consensus
The complex and multifaceted nature of language adds to the difficulties of identifying and categorising language impairments. In common usage, the terms speech, language and communication are often treated interchangeably, but they have distinct meanings. Language involves the comprehension and use of words and sentences to convey ideas and information. Language can occur in different modalities:
not defined in this paper's own words; signalling between producer and receiver; art is the subclass that coevolves with evaluation
coevolutionary-aesthetics-in-human-and-biotic-artworlds
Put simply, art consists of a form of communication that has coevolved with its evaluation. 2 Aesthetic coevolution is the process by which performances or artifacts and their evaluations mutually transform each other over time through their history of interactions. Aesthetic coevolution proceeds by the feedback between innovations in communication and evaluation upon each other. Evaluation involv
not defined in this paper's own words; the social function art is said to serve - displays and sharing between people
can-computers-create-art
Why do we create and consume art? I argue that art is primarily a social behavior: art is about communication and displays between people. For example, people often speak of art as being about personal expression, which is an act of communication.
not defined in this paper's own words; exchange between families, patients and professionals, strained by pandemic rules
costeira2024-death-unpreparedness-covid
Improving communication within a pandemic might potentially alleviate the emotional strain experienced by both impacted families and healthcare professionals
not defined in this paper's own words; direct organism-environment account of perception and action
baggs2020-ecological-psychology-enactivism-action
Ecological Psychology is the oldest radical challenger of classical representationist cognitive science with its seven-decade-long history. The germinal books for this approach are James J. Gibson's The Senses Considered as Perceptual Systems (1966) and The Ecological Approach To Visual Perception (1979, 2015). During these decades (between the 1970's and the 1990's) ecological psychologists kept
not defined in this paper's own words; non-representational organism-environment cognition
heft2018-history-philosophy-ecological-psychology
Ecological psychology is an embodied, situated, and non-representationalist approach to cognition pioneered by J. J. Gibson (1904–1979) in the field of perception and by E. J. Gibson (1910–2002) in the field of developmental psychology. Ecological psychology, in its very origins, aimed to offer an innovative perspective for understanding perception and perceptual learning that overcomes the tradit
not defined in this paper's own words; direct relational perception supporting adaptive action
popova2020-enactivism-ecological-psychology-agency
Ecological psychology is based on the assumption of an essentially active organism, where the coherence and adaptivity of action both shape and drive the cognitive processes. Perception is direct, continuous, and unmediated, and it involves the agent’s movement. The lack of the necessity for inferential processes stems from this directness and from the fact that perception provides rich and highly
an embodied, situated, non-representational approach centered on perception-action and organism-environment systems
heft2018-history-philosophy-ecological-psychology
Ecological Psychology is an embodied, situated, and non-representational approach pioneered by J. J. Gibson and E. J. Gibson. This theory aims to offer a third way beyond cognitivism and behaviorism for understanding cognition. The theory started with the rejection of the premise of the poverty of the stimulus, the physicalist conception of the stimulus, and the passive character of the perceiver
not defined in this paper's own words; the shift of burden from communicable to non-communicable diseases
ferrari2024-global-burden-371-diseases
In 2020 and 2021, global health outcomes, as measured by age-standardised DALY rates, worsened for the first time in three decades. From 1990 to 2019, GBD analyses showed consistent and rather encouraging improvements in overall health outcomes at the population level. During this period, achievements by the global health community included reductions in vaccine-preventable deaths and improvements
not defined in this paper's own words; the shift of burden towards non-communicable causes and disability with development
vos2020-global-burden-369-diseases
Countries and territories vary widely in their stages of the epidemiological transition. With increasing SDI, we expect to see a shift in the burden of disease from communicable, maternal, neonatal, and nutritional diseases towards non-communicable causes. We also expect to see a shift towards a larger fraction of the burden due to YLDs compared with YLLs. These two major trends can be summarised
not defined in this paper's own words; shift from Group I and younger-age mortality toward noncommunicable and older-age mortality
mathers2006-projections-global-mortality-burden-disease
These projections represent a set of three visions of the future for population health, based on certain explicit assumptions. Despite the wide uncertainty ranges around future projections, they enable us to appreciate better the implications for health and health policy of currently observed trends, and the likely impact of fairly certain future trends, such as the ageing of the population, the c
a historical process named in theory, turned here into one ratio (non-communicable disease and injury YLDs over total DALYs), so the concept becomes a country-level number
vos2020-global-burden-369-diseases
The Socio-demographic Index (SDI) is a composite indicator of a country's lag-distributed income per capita, average years of schooling, and the fertility rate in females under the age of 25 years ( appendix 1 section 6 ). 13 For changes over time, we present annualised rates of change as the difference in the natural log of the values at the start and end of the time interval divided by the numbe
not defined in this paper's own words; overlapping similarities among a concept's instances with no common property
artefacts-and-family-resemblance
I develop in this paper a conception of artefacts based on L. Wittgenstein’s idea of family resemblance. My approach peruses the notion of frame, which was invented in cognitive psychology as an operationisable extension of this philosophical idea. Following the metaphor of life-cycle I show how this schematic notion of frame may be filled with the content relevant for artefacts if we consider the
a concept whose instances share overlapping similarities with no property common to all
artefacts-and-family-resemblance
Usually the idea of family resemblance is traced back to two quotes from Ludwig Wittgenstein’s Philosophische Untersuchungen : Consider for example the proceedings we call games […] if you look at them you will not see something that is common to all, but similarities, relationships, and a whole series of them at that […] look for example at board games with their multifarious relationships. Now p
not defined in this paper's own words; the philosophical and cognitive concept of polymorphic similarity, of which the ensemble is an estimate
epjds2023-compression-ensembles
The vector space of the ensemble allows for flexible operationalization and visualization, e.g. a single figure (e.g. 3) can summarize careers of several artists. This is not entirely dissimilar to the intuition of an human connoisseur trained on a given corpus of art. As each transformation in an ensemble represents a tangible visual aspect e.g. abundance of detail or colorfulness, as a whole, it
the Wittgensteinian idea that members of a category share overlapping similarities without any single property (or set of properties) common to all
the-folk-concept-of-art
All of the discussed definitions can be interpreted as essentialist: they invoke necessary and sufficient conditions for an object to be considered an artwork, or at least emphasize one factor as the most important, while others are treated as more peripheral. This view is challenged by anti-essentialists, who object to essentialist definitions with counterexamples that are intended to demonstrate
not defined in this paper's own words; GSEA tailored by the model to single-cell data
finak2015-mast-a-flexible-statistical-framew
Our model provides gene set enrichment analysis tailored to single-cell data.
not defined in this paper's own words; application for which direct protein-binding annotations are discouraged
aleksander2023-the-gene-ontology-knowledgebase-in
We suggest that users should be particularly cautious when using GO annotations directly to the term protein binding (GO:0005515; see Table 2 ). These are highly specific annotations that include the protein binding partner in another field of the annotation (not in the GO term itself) and should not be used in applications such as gene set enrichment analysis. Instead, they are recommended for ap
not defined in this paper's own words; database-scale co-regulated-set correlation
ritchie2015-limma-differential-expression
Gene set enrichment analysis (GSEA) is an approach that correlates a large database of co-regulated gene sets with respect to a microarray or RNA-seq data set ( 62 , 63 ). GSEA is a hybrid approach: it is competitive in that different sets are pitted against one another, but significance is evaluated by permutation of sample labels. The romer function in limma implements a GSEA approach that is ba
not defined in this paper's own words; statistical search for functionally enriched sets offered on networks
szklarczyk2022-string-database
To improve this situation, STRING now allows its users to upload any fully sequenced proteome (including those that are already part of the database), enabling them to browse and query the predicted protein–protein interactions in an identical manner to the genomes already natively covered by the STRING database. This includes access to the evidence viewers, homology viewer, network clustering met
a globally standardized measure of the cumulative human footprint on the terrestrial environment
venter2016-global-human-footprint-biodiversity
a 0-50 score per 1 km grid cell summing eight weighted pressures
venter2016-global-human-footprint-biodiversity
For any grid cell, the human footprint can range between 0 and 50.
not defined in this paper's own words; standardized cumulative terrestrial pressure measure
venter2016-global-terrestrial-human-footprint-maps
Cumulative pressure maps have been developed at regional 9 , 10 and global scales 11 , 12 . The ‘Human Footprint’ was first released in 2002 using data primarily from the early 1990s (approximately 1993) on eight human pressures globally, making it the most complete, highest resolution and globally-consistent terrestrial dataset on cumulative human pressures on the environment 13 . It has been use
a standardized cumulative measure formed from eight direct and indirect human-pressure layers
venter2016-global-terrestrial-human-footprint-maps
To create the Human Footprint maps we adopted the methods developed by Sanderson and colleagues 13 . Data on human pressures in 1993 and 2009 were collected or developed for: 1) the extent of built environments, 2) population density, 3) electric infrastructure, 4) crop lands, 5) pasture lands, 6) roads, 7) railways, and 8) navigable waterways, which are described in detail below ( Fig. 1 , step 1
putting an intervention into effect when delivered in a setting
smith2020-rapid-implementation
the extent to which the intervention can be delivered as planned
klaic2022-implementability-healthcare-interventions
not defined in this paper's own words; the process of putting new practices to use or integrating them within a setting
nilsen2015-implementation-theories-models-frameworks
Implementation is part of a diffusion-dissemination-implementation continuum: diffusion is the passive, untargeted and unplanned spread of new practices; dissemination is the active spread of new practices to the target audience using planned strategies; and implementation is the process of putting to use or integrating new practices within a setting [ 16 , 17 ].
not defined in this paper's own words; a staff- and setting-level RE-AIM dimension covering fidelity, adaptation, and cost
glasgow2019-re-aim-planning-evaluation-framework
All RE-AIM dimensions are complex, but implementation currently has the most indices. It focuses on fidelity to an intervention: the extent to which the program is implemented consistently across different settings, staff, and patients. It also includes adaptations made ( 58 ) and costs from multiple stakeholder perspectives ( 59 ). Maintenance has indices at the individual- (long-term effectivene
not defined in this paper's own words; irreducible information generated above independent parts
oizumi2014-iit-phenomenology-mechanisms-consciousness
Integrated information ( φ ): Information that is generated by a mechanism above and beyond the information generated by its (minimal) parts. φ measures the integration or irreducibility of mechanisms (integration at the mechanism level).
not defined in this paper's own words; cause-effect power surviving a minimum partition
albantakis2023-integrated-information-theory-4-consciousness
In summary, the system integrated information ( φ s ( T e , T c , s ) , also called ‘ small phi ’, quantifies the extent to which system S in state s has cause–effect power over itself as one system ( i.e ., irreducibly). φ s ( T e , T c , s ) is thus a quantifier of irreducible existence.
not defined in this paper's own words; intrinsic cause-effect power over and above component contributions
cooke2021-what-is-consciousness-integrated-information
The description of consciousness that is offered in IIT is that consciousness is integrated information. Information should not be understood here as relating to Shannon information [ 19 ] but is instead the intrinsic cause–effect power of a system, the “differences that make a difference” [ 16 ]. A system that consists of fully independent components has no intrinsic cause–effect power, no differ
not defined in this paper's own words; whole-system information irreducible to separate constituents
wahbeh2022-what-if-consciousness-is-not-an-emergent-pro
Integrated information refers to a system’s constituents that are discriminated by their respective information. The whole cannot be reduced to the information of each part, called the “causal-effect power” ( Oizumi et al., 2014 ). These irreducible maxima of additional integrated information generated by the system as a whole compared to its parts are termed and quantified as Φ (“phi”) and affect
not defined in this paper's own words; protection against disclosure through neural data
schleim2021-neurorights-history-brain-control
As already stated in the introduction, the four main neurorights are: (1) cognitive liberty; (2) mental privacy; (3) mental integrity; and (4) psychological continuity. The first, sometimes also called the right to mental self-determination, has two aspects: access to neurotechnologies and protection against their coercive and unconsented use; cognitive liberty is also considered the most fundamen
not defined in this paper's own words; protection of mental information from unconsented intrusion
ienca2021-on-neurorights
Unlike the derivatives of freedom of thought, the neurorights originating from the right to privacy seem to be characterized by a much greater degree of conceptual and terminological agreement. Mental privacy is the expression generally used to denote people’s right against the unconsented intrusion by third parties into their brain data as well as against the unauthorized collection of those data
not defined in this paper's own words; privacy of thoughts and mental states
bublitz2022-novel-neurorights-nonsense-substance
The importance of a right to mental privacy is evident not only to lawyers. But it raises the question why it should be recognized as a standalone right (as the proposal is understood to suggest). Several international instruments protect a general right to privacy or private life. According to the standards of legal interpretation, this abstract right implies more context or domain-specific varia
protection of brain information and its neural source from illegitimate access or leakage
ianca2017-new-human-rights-neuroscience-neurotechnology
Based on these specific challenges, we argue that current privacy and data protection rights are insufficient to cope with the emerging neurotechnological scenarios. Consequently, we suggest the formal recognition of a right to mental privacy, which aims to protect any bit or set of brain information about an individual recorded by a neurodevice and shared across the digital ecosystem. This right
typically defined as plastic particles of size between 1 μ m and 5 mm ( 3 )
shaw2023-ocean-emission-microplastic
AS DEFINED HERE: plastic particles under 5 mm, AND THE DEFINITION COMMONLY INCLUDES the nano-scale below 1 micrometre. koelmans2019, in this corpus, says particles below 1 micrometre are usually called NANOPLASTICS RATHER THAN microplastic - the same boundary drawn the opposite way
smith2018-microplastics-in-seafood-and-the-i
Additionally, when plastics are exposed to natural forces like sunlight and wave action, plastics will degrade into microplastics—defined as plastic particles under 5 mm in size. This definition commonly includes plastic pieces in the nano-scale, < 1 μm in size.
A PURE SIZE CLASS. `synthetic solid particles or polymeric matrices, with regular or irregular shape and with size ranging from 1 um to 5 mm, of either primary or secondary manufacturing origin, which are insoluble in water`. Two numbers and an insolubility test; everything else in the definition is a disjunction that excludes nothing
campanale2020-a-detailed-review-study-on-potenti
Microplastics (MPs) are defined by [ 17 ] as “synthetic solid particles or polymeric matrices, with regular or irregular shape and with size ranging from 1 μm to 5 mm, of either primary or secondary manufacturing origin, which are insoluble in water.
AS USED HERE: a water-insoluble solid polymer particle <=5 mm, with NO formal lower bound; below 1 micrometre the convention is to say nanoplastic instead, and a convention is not a boundary
koelmans2019-microplastics-in-freshwaters-and-d
Microplastics are generally characterised as water-insoluble, solid polymer particles that are ≤5 mm in size ( Bergmann et al., 2015). A formal definition for the lower size boundary does not exist, but particles below 1 μm are usually referred to as nanoplastics rather than microplastic
most experiments aim to identify the minimal neural activations that are sufficient for a specific content of consciousness
Overgaard2017-the-status-and-future-of-consciousness-resea
not defined in this paper's own words; minimal neural mechanisms sufficient for a specific experience
wahbeh2022-what-if-consciousness-is-not-an-emergent-pro
Over the past few decades, most scientifically oriented research on consciousness has studied consciousness as a controlled variable. They have reduced consciousness to simpler constructs, such as perception, and focused on comparisons in brain processes during conscious and unconscious conditions, the so-called “contrastive approach.” In this approach, differences in brain activity are examined w
not defined in this paper's own words; minimally sufficient neuronal structures and functions correlated with conscious phenomena
farisco2018-large-scale-brain-simulation-and-disorders-o
most recognize the relevance of the empirical findings identifying so called “neural correlates of consciousness” (NCC), i.e., a set of neuronal structures and functions correlating with conscious phenomena. Since their formal introduction in the scientific debate at the beginning of 90s ( Crick and Koch, 1990 ), NCC have been widely scrutinized from both conceptual and empirical points of view (
Contrary to this, other scientists are preoccupied with finding neural correlates of consciousness “as such”—i.e., neural correlates that mark the difference between being dead, asleep, awake, etc., and which are not content-specific in the sense above.
Overgaard2017-the-status-and-future-of-consciousness-resea
Principal Component Analysis (PCA) is a popular algorithm pattern recognition and discrimination method.
turkerkaya2017-a-review-of-mid-infrared-and-near
not defined in this paper's own words; the ecosystem-level ordination of microbiota composition
lahti2014-tipping-elements-intestinal-ecosystem
Ecosystem-level investigation based on principal component analysis (PCA; Supplementary Fig. 7 ) and the PSI 10 , 15 indicated two alternative states in the overall microbiota composition, roughly corresponding to low and high Prevotella , in line with previous reports 9 , 10 .
not defined in this paper's own words in this sentence
kibble2020-integrative-machine-learning-obesity-twins, takemoto2024-moral-machine-large-language-models, yokoyama2020-seasonal-density-habitat-catchability
Unlike classical methods, like principal component analysis (PCA) and clustering which are suitable for analysing a single data source only, GFA learns and identifies relationships between multiple data sources.
not defined in this paper's own words; linear dimension reduction, interpretable via loadings on the original variables
epjds2023-compression-ensembles
The model used in this contribution consists of 112 transformations (see Fig. 1.A for examples; Table S1 and Figure S1 in the Additional file 1 for the full list; we use lossless gif, and also png and lossy jpeg on a smaller subset). The exact nature and number of transformations is unimportant yet subject to optimization. More features increase computation time, but provide more information, i.e.
not defined in this paper's own words; GRADE consideration for evidence certainty
bull2020-world-health-organization-physical-activity-sedentary-behaviour-guidelines
The GDG reconvened in February 2020 to review the evidence and finalise a draft set of recommendations. They examined the quality of research contributing to each outcome identified in the PI/ECO questions and assessed the overall certainty of evidence ( table 2 ) taking into consideration the risk of bias, inconsistency, imprecision, indirectness of the evidence and publication bias across each o
not defined in this paper's own words; publication decisions depending on significance or other result features
greenland2016-statistical-tests-p-values-confidence-intervals-power
Less often stated is the even more crucial assumption that the analyses themselves were not guided toward finding nonsignificance or significance (analysis bias), and that the analysis results were not reported based on their nonsignificance or significance (reporting bias and publication bias). Selective reporting renders false even the limited ideal meanings of statistical significance, P values
not defined in this paper's own words; selective publication of positive and novel findings
munafo2017-manifesto-reproducible-science
Promoting study pre-registration. Pre-registration of study protocols for randomized controlled trials in clinical medicine has become standard practice 46 . In its simplest form it may simply comprise the registration of the basic study design, but it can also include a detailed pre-specification of the study procedures, outcomes and statistical analysis plan. It was introduced to address two pro
not defined in this paper's own words; selective publication that can distort a meta-analysis
fanelli2009-scientist-misconduct-meta-analysis
The popular funnel-plot-based methods to test for publication bias in meta-analysis are inappropriate and potentially misleading when the number of included studies is small and heterogeneity is large [25] , [26] . However, the robustness of results was assessed with a sensitivity analysis. Pooled weighted estimates for effect size and regression parameters were calculated leaving out one study at
not defined in this paper's own words; the number of product molecules formed per photon absorbed by the photocatalyst
cismesia2015-photoredox-chain-processes
The closed photoredox loop lacking chain propagation shown in Scheme 1 could exhibit a maximum theoretical quantum yield ( Φ ) of 1, which would indicate that every photon absorbed by the photocatalyst was producing one product molecule.
not defined in this paper's own words; photons emitted per photon absorbed
yuan2018-triangular-carbon-quantum-dots
In the last few years, great progress has been made in designing and synthesizing highly tunable bandgap fluorescent CQDs with a quantum yield (QY) as high as 75%, even comparable to the best performing Cd 2+ /Pb 2+ -based QDs, through a variety of strategies such as heteroatom doping, surface engineering or passivation, and product separation and purification 15 – 18 .
not defined in this paper's own words; the fraction of absorbed photons re-emitted as fluorescence
antaris2017-nir-ii-molecule-protein-fluorophore
Internal conversion is the most important competing non-emissive process for low energy-gap NIR-II dyes thus increasing rigidity through protein binding will favourably increase quantum yield.
a lower bound on chain length, since non-productive decay lowers it without shortening chains
cismesia2015-photoredox-chain-processes
Thus, although the observation of a quantum yield much greater than unity provides confirmation of the chain nature of this reaction, the actual length of the chains could be substantially higher than the quantum yield.
not defined in this paper's own words; designation for the virus causing COVID-19
roltgen2020-defining-the-features-and-duration
The virus causing COVID-19 belongs to the Sarbecovirus subgenus (genus Betacoronavirus ) together with the severe acute respiratory syndrome coronavirus (SARS-CoV) and has been designated SARS-CoV-2 ( 9 ). Coronaviruses contain four structural proteins, including spike, envelope, membrane, and nucleocapsid (N) proteins. The spike surface glycoprotein contains the receptor binding domain (RBD), whi
not defined in this paper's own words; the ICTV designation given after acceptance
wu2020-new-coronavirus-respiratory-disease-china
Note added in proof: Since this paper was accepted, the ICTV has designated the virus as SARS-CoV-2 30 ; in addition, the WHO has released the official name of the disease caused by this virus, which is COVID-19 31 .
not defined in this paper's own words; abbreviation for the pathogen
ainsworth2020-performance-characteristics-of-fiv
Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) has emerged as a novel human pathogen, causing a global pandemic in 2020, with more than 25 million confirmed infections and more than 840 000 deaths to date. 1 Testing and case ascertainment have been crucial to controlling virus transmission and in developing public health and political strategies to mitigate the effect of this pathoge
not defined in this paper's own words; the ICTV's designation, recorded here in a note added in proof
zhou2020-a-pneumonia-outbreak-associated-wi
Note added in proof: Since this paper was accepted, the ICTV has designated the virus as SARS-CoV-2 15 ; in addition, the WHO has released the official name of the disease caused by this virus, which is COVID-19
not defined in this paper's own words; short-lived activation, stored knowledge, neural pattern, or artificial informational state
jefferies2024-multidisciplinary-semantic-glossary
Dissent #1 for semantic representation (Majid): The definition provided specifies semantic representations are the “cognitive and neural manifestation” of knowledge, which by definition rules out the possibility that artificial intelligence could have semantic representations. Rather than stipulating this to be the case, I believe this should be a matter of scientific inquiry. In defense of mainta
not defined in this paper's own words; organization of conceptual knowledge across multiple information sources
dove2022-social-semantics-abstract-concepts
Between these poles lie multimodal or multiple representation theories, which posit that semantic knowledge is represented in many ways (e.g. via language, emotion, introspection and sensorimotor systems), and some versions of those theories include an intermediary supramodal hub (e.g. [ 11 , 12 ]).
not defined in this paper's own words; word meaning grounded across sensory and action dimensions
lynott2019-lancaster-sensorimotor-norms
In conclusion, the Lancaster Sensorimotor Norms provide a valuable resource for researchers across a variety of fields. Use of these norms as semantic variables, whether as an aggregate measure of sensorimotor strength or as modality- and effector-specific ratings, will inform psycholinguistic models of word recognition and language processing (e.g., Connell & Lynott, 2016a ; Estes, Verges, & Adel
a cognitive and neural manifestation of structured semantic knowledge in long-term memory
jefferies2024-multidisciplinary-semantic-glossary
Definition: The cognitive and neural manifestation of the information content of semantic knowledge, which is the structured knowledge stored in long-term memory (i.e., semantic memory).
not defined in this paper's own words; line-oriented molecule input representation
daina2017-swissadme-free-web-tool
The input zone itself comprises a molecular sketcher based on ChemAxon’s Marvin JS ( http://www.chemaxon.com ) that enables the user to import (from a file or an external database), draw, and edit a 2D chemical structure, and to transfer it to a list of molecules. This list, on the right-hand side of the submission page, is the actual input for computation. It can be edited as a standard text, all
not defined in this paper's own words; alternate submitted structure encoding
bento2020-open-source-chemical-structure-curation
The chemical structures submitted to the ChEMBL database are generally received as molfiles [ 4 ] but can also be in SMILES format [ 5 ]. There is no universal standard for these formats and the challenges of converting between chemical structure formats is well documented [ 6 ]. Even the simple process of loading molecules into and out of different cheminformatics packages can subtly change the s
not defined in this paper's own words; string representation of molecular composition and connectivity
smith2017-ani1-dataset-organic-molecules
GDB molecules are stored as SMILES [ www.opensmiles.org ] strings representing the composition and connectivity of a molecule.
a popular non-unique, unambiguous line notation generated by graph traversal
david2020-molecular-representations-ai-drug-discovery-review
WLN requires an extensive knowledge and understanding of the notation’s rule. A more intuitive notation, the Simplified Molecular Input Line Entry System (SMILES), was developed in 1988 by Weininger et al. [ 9 ] and has been the most popular line notation ever since. SMILES notation system was then incorporated into the Daylight Chemical Information Systems [ 48 ] toolkit; the company is still cur
the feeling of being there with a “real” person
oh2018-social-presence-systematic-review
in early work, a quality of the medium itself, technologically determined
oh2018-social-presence-systematic-review
The view that social presence is technologically determined was also echoed by early CMC researchers who endorsed the cues-filtered-out perspective (see Walther and Parks, 2002 for review).
in social information processing theory, contingent on the interactants rather than on the medium
oh2018-social-presence-systematic-review
From this perspective, the experience of social presence is highly contingent on the interactants, rather than the medium itself. This view is known as social information processing theory (SIPT).
the psychological phenomenon in which, to a certain extent, the others are perceived as physical “real” persons in technology-mediated communication enabled by CMC tools and electronic platforms
kreijns2021-social-presence-conceptualization
not defined in this paper's own words; the frequent tone
Natan2015-complementary-control-of-sensory-adaptation
In each oddball stimulus, one tone was presented as the rare (deviant) tone, while the other was presented as the frequent (standard) tone (A to B ratio of 90:10 or 10:90, Figure 1A ).
not defined in this paper's own words; CPD class for expected protein count
bateman2020-uniprot-the-universal-protein-know
UniProt proteomes provide the set of proteins currently believed to be expressed by an organism. Previously, this dataset only consisted of complete proteomes derived from fully sequenced genomes. This has now been updated to enable the user to access a wider set of proteomes with different quality and completeness metrics. To enable researchers to evaluate proteome completeness and expected gene
not defined in this paper's own words; normative specification that FAIR explicitly is not
wilkinson2016-fair-guiding-principles-data-stewardship
These high-level FAIR Guiding Principles precede implementation choices, and do not suggest any specific technology, standard, or implementation-solution; moreover, the Principles are not, themselves, a standard or a specification. They act as a guide to data publishers and stewards to assist them in evaluating whether their particular implementation choices are rendering their digital research ar
For each neuron, SSA index is a measure of the strength of SSA based on its mean FR with respect to tone probability. FRs to tones A and B were summed according to their standard or deviant probability within each oddball stimulus ( Ulanovsky et al., 2003 ).
Natan2015-complementary-control-of-sensory-adaptation
not defined in this paper's own words; the positive or negative valence of an aesthetic experience, recognisable only within its own artworld
coevolutionary-aesthetics-in-human-and-biotic-artworlds
Because aesthetic properties originate independently in independent artworlds, biotic examples of negative aesthetic value cannot be distinguished from beauty on the basis of their intrinsic form. Aposematic warning color patterns are similar to those used for mate attraction in some avian artworlds, and are commonly viewed as beautiful by humans. The rattlesnake warning rattle is acoustically sim
not defined in this paper's own words; the possession of aesthetic / beauty qualities that afford aesthetic experience
the-folk-concept-of-art
Although most philosophers see the definitional project as (at least partially) descriptive – that is, they regard it as dependent on how we do think about art rather than on how we should think about art – there is very little empirical research on what ordinary people identify as art. In this paper, we distinguish between two kinds of projects in the philosophy of art: essentialist definitions o
not defined in this paper's own words; the attractiveness of a cultural product; whether art improves objectively over time
epjds2023-compression-ensembles
While we focus on complexity, the same approach could be used on other related phenomena. For example, Sinclair et al. [68] raise the concept of “aesthetic value” or “attractiveness” of a given cultural product, to discuss whether art and music indeed could be considered as products of cumulative cultural evolution [66] or not, as “cumulative” would allude to objective improvement over time [69].
Area Under the Curve
nonaka2023-hikikomori-definition-outing-frequency
area under receiver operating characteristic curve
liu2019-deepmod-nanopore-dna-modifications
area under the ROC curve
litjens2016-deep-learning-histopathology, unal2017-roc-optimal-cut-point
not defined in this paper's own words; self-producing maintenance of a living boundary
allen2016-cognitivism-autopoiesis-embodied-mind
For example, a cell persists in virtue of its ability to create and maintain a boundary (cell-surface), through which it interacts with the environment, thereby maintaining the integrity of the boundary. It is this autopoiesis , or self-creation, which enables the system to limit the possible states it visits, and thus to survive (Varela et al. 1974 ). The FEP recasts this as a kind of self-fulfil
not defined in this paper's own words; continuous self-production of an autonomous living system
van-der-schijff2018-4e-music-pedagogy-self-organization
How can we distinguish between living and non-living systems? The Chilean scientists Francisco Varela and Humberto Maturana developed the theory of ‘autopoiesis’ to help draw out this distinction [ 12 , 13 , 14 , 15 ]. Put simply, their theory holds that a living system is not a thing (or a finite entity), but rather “a process with the particular property of engendering itself indefinitely” [ 34
not defined in this paper's own words; active adaptive self-maintenance informing enactivist cognition
stanciu2023-consciousness-4e-cognition-and-aristotle-a-f
This was related to the notion of autopoiesis in biology. Moreover, by describing living systems as active, adaptive, self-maintaining, and self-individuating, the idea of autopoiesis inspired enactivist views in cognitive science in turn (Maturana and Varela, 1998 ; Di Paolo and Thompson, 2014 ). The latter themselves are important for the explanation of consciousness and of various human process
the masses is the chirp mass
abbott2017-gw170817
not defined in this paper's own words; mass combination estimated from the observed frequency evolution and used to constrain total mass
abbott2016-gravitational-waves
Estimating f and _f from the data in Fig. 1, we obtain a chirp mass of M ≃ 30M⊙, implying that the total mass M ¼ m1 þ m2 is ≳70M⊙ in the detector frame
not defined in this paper's own words; component-mass combination governing early frequency evolution
abbott2017-gw170817
At early times, for low orbital and gravitational-wave frequencies, the chirplike time evolution of the frequency is determined primarily by a specific combination of the component masses m1 and m2, the chirp mass M ¼ ðm1m2Þ3=5ðm1 þ m2Þ−1=5. As the orbit shrinks and the gravitational-wave frequency grows rapidly, the gravitational-wave phase is increasingly influenced by relativistic effects relat
not defined in this paper's own words; arrangement of behavioral environments by policymakers
petrescu2016-public-acceptability-nudging-obesity
Much of the global health burden of chronic diseases is associated with modifiable behaviors, principally smoking, alcohol consumption, physical inactivity, and unhealthy food consumption [ 1 ]. Altering the environments in which behavior occurs—the “choice architecture”, also known as “nudging”—has the potential to change behavior in populations [ 2 – 6 ]. Whether such interventions are implement
not defined in this paper's own words; environmental arrangement within which food choices occur
bucher2020-nudges-real-life-food-purchasing
Nudging has been proposed as a promising environmental intervention strategy for modifying food choices. The term ‘nudge’ was originally coined by Thaler and Sunstein in 2008 and defined as: ‘ Any aspect of the choice architecture that alters people’s behaviour in a predictable way, without forbidding any options or significantly changing their economic incentives’ (p.6 ) [ 8 ]. Nudging became pop
not defined in this paper's own words; designed context constraining and steering online behavior
kozyreva2020-citizens-internet-cognitive-tools
Another feature that distinguishes online environments from physical surroundings is the ubiquity and the power of the design that mediates people’s online experience. The design of an interface in which people encounter the complexity of interconnected information online—the “human interface” ( Berners-Lee et al., 1992 )—presupposes that it has a decisive role in how people perceive the informati
memory held by individuals as members of groups or participants in interactions
esposito2023-collective-memory-consciousness-social-systems
Our proposal is not to abandon the concept, but to clarify and articulate the concepts of collective memory and social memory, reserving the concept of social memory for the communication operations of social systems, and the concept of collective memory for the operations of individual systems of consciousness. This may seem counterintuitive, but it allows us to extract ourselves from the metapho
not defined in this paper's own words; socially situated individual remembering
esposito2023-collective-memory-consciousness-social-systems
Regardless of which approach is preferred, there is no doubt here that collective memory refers to cognitive operations specific to individual systems of consciousness: only individuals remember, although they never remember alone (with reference to Halbwachs’ idea that we are never alone). It is as participants in interactions or as members of a group (formal or informal, large or small, real or
convergence of remembered and forgotten items among members of a social network or community
momennejad2021-collective-minds-network-topology
A key question in understanding collective cognition is how the structures of communication networks ( figure 1 ) align collectively shared memories and beliefs. From friendship circles to large communities, shared memories often shape group identity, which in turn facilitates collective action. There are different definitions of collective memory in the social and psychological literature. In thi
not defined in this paper's own words; bridge field relating brain processes to learning and education
ruiz-martin2021-persistence-neuromyths-education
Due to this multidisciplinary approach, “educational neuroscience” tends to encompass research in the processes of the brain that affect learning and education (Knox, 2016 ).
not defined in this paper's own words; the field that reads neural evidence for the design of teaching, on the argument that behavioural methods could not reach these questions
Li2025-meta-analysis-of-fmri-studies-related-to-mat
With the development of educational neuroscience, more and more studies have begun to explore the neural regions and networks of the brain that are related to creativity in an attempt to come up with more scientific educational strategies to improve students’ creativity because traditional educational research methods are difficult to investigate the relationship of mathematics and creativity desp
interdisciplinary translation of neural mechanisms of learning into educational practice and policy
thomas2018-educational-neuroscience-progress-prospects
Educational neuroscience is an interdisciplinary research field that seeks to translate research findings on neural mechanisms of learning to educational practice and policy and to understand the effects of education on the brain. Neuroscience and education can interact directly, by virtue of considering the brain as a biological organ that needs to be in the optimal condition to learn (‘brain hea
not defined in this paper's own words; one of three clusters named for a dominant genus - Bacteroides, Prevotella, Ruminococcus - grouped by function rather than by membership
rinninella2019-what-is-the-healthy-gut-microbiota
Gut microbiota of each individual are specifically characterized by clusters of bacteria named enterotypes \ [13\]. Three enterotypes are characterized by three dominant bacteria clusters ( Table 2): _Bacteroides_ (enterotype I), _Prevotella_ (enterotype II), or _Ruminococcus_ (enterotype III).
not defined in this paper's own words; one of three types named for a dominant genus, derived from 33 samples, and whose EXISTENCE this paper calls controversial
thursby2017-introduction-to-the-human-gut-micr
Multi-dimensional analysis of 33 samples from different nationalities revealed the presence of three enterotypes identifiable by variations in the level of one of three genera: _Bacteroides_ (enterotype 1), _Prevotella_ (enterotype 2) and _Ruminococcus_ (enterotype 3) \ [49\]. However, evidence surrounding the existence and formation of these enterotypes is controversial
a functional harmonious association of several bacterial species rather than a systematic addition of species - three are named, for Bacteroides, Prevotella and Ruminococcus
rinninella2019-what-is-the-healthy-gut-microbiota
These three enterotypes are not only enumerations of bacteria; they are also specifically regrouped by functions. Indeed, an enterotype is a functional harmonious association of several bacteria species rather than a systematic addition of bacteria species.
not defined in this paper's own words; nodes and edges connected by relations
jiang2021-graph-neural-networks-molecular-representation
Molecular property modelling, which assists in hunting for chemicals with desired pharmacological and ADME/T (absorption, distribution, metabolism, excretion, and toxicity) properties, is one of the most classical cheminformatics tasks [ 1 , 2 ]. A variety of machine learning (ML) approaches, such as Naive Bayes (NB) [ 3 – 5 ], k-Nearest Neighbors (k-NN) [ 6 ], logistic regression (LR) [ 7 , 8 ],
not defined in this paper's own words; tuple of nodes and edges
david2020-molecular-representations-ai-drug-discovery-review
A graph 1 is formally defined as a tuple G = ( V , E ) of a set of nodes V and a set of edges E , where each edge e ∊ E connects pairs of nodes in V . In a molecular graph, V is intuitively the set of all atoms in a molecule, and E is the set of all bonds linking the atoms, although this does not have to be the case. Molecular graphs are generally undirected, meaning that the pairs in E are unorde
not defined in this paper's own words; an abstract structure of entities represented as vertices and connections represented as edges
reiser2022-graph-neural-networks-materials-chemistry
In the most general sense, graphs are used to describe abstract structures consisting of entities or objects represented as vertices (or nodes) and their connections, called edges.
methods used to promote adoption, implementation, sustainment, or scale-up of evidence-based practice
lewis2018-classification-causality-implementation-mechanisms
In our case example, training is a strategy that is underspecified. We adapted procedures from Michie et al. ( 26 ) to guide strategy specification recommending that each strategy be assessed for whether it: (1) aims to promote the adoption, implementation, sustainment, or scale-up of an evidence-based practice; (2) is a proposed “active ingredient” of adoption, implementation, sustainment, or sca
not defined in this paper's own words; methods or techniques that enhance adoption, implementation and sustainability of clinical practices
powell2015-refined-compilation-implementation-strategies-eric
Research focusing on implementation strategies, defined as “methods or techniques used to enhance the adoption, implementation, and sustainability of a clinical program or practice” [ 1 ], has been prioritized in order to bridge the quality chasm in health and mental health services [ 2 - 5 ]. a However, efforts to identify, develop, and test implementation strategies have been complicated by a la
not defined in this paper's own words; strategies intended to change implementation outcomes
lewis2018-classification-causality-implementation-mechanisms
The science of implementation has offered little toward understanding how different implementation strategies work. To improve outcomes of implementation efforts, the field needs precise, testable theories that describe the causal pathways through which implementation strategies function. In this perspective piece, we describe a four-step approach to developing causal pathway models for implementa
One concept commonly used in these approaches is information content (IC), which gives a measure how specific and informative a term is.
pesquita2009-semantic-similarity-in-biomedical-ontologies
not defined in this paper's own words; model-based unexpectedness of an event
pearce2018-statistical-learning-probabilistic-prediction-music
IDyOM acquires knowledge about the structure of music through statistical learning of variable‐length sequential dependencies between events in the music to which it is exposed and, while processing music event by event, generates expectations for the next event (e.g., the note that continues a melody) in the form of a probability distribution ( P ) that assigns a probability to each possible next
not defined in this paper's own words; the quantity Resnik's measure computes on the lowest common ancestor - lower for frequently occurring terms
schlicker2006-a-new-measure-for-functional-simil
Resnik [ 13 , 14 ] developed a measure of semantic similarity for "is-a" ontologies based on the information content of the lowest common ancestor (LCA) of two terms. The more frequently a term occurs, i.e., the higher its probability of occurring, the lower its information content. If the LCA of two terms describes a generic concept, these terms are not very similar and this is reflected in a low
large language models
bodroza2024-personality-testing-large-language-models, takemoto2024-moral-machine-large-language-models
large language models (LLMs)
peters2024-llms-infer-psychological-dispositions
neural networks characterized by their deep layers and extensive scale
abdurahman2024-llms-psychological-research
mean absolute error
cunningham2019-automated-posture-estimation-cerebral-palsy, zufall2023-legal-balancing-of-interests
not defined in this paper's own words; abbreviation for mean absolute error
abatzoglou2018-terraclimate-high-resolution-global-dataset
Data from TerraClimate were extracted at grid cells co-located with individual stations. We calculated linear validation statistics of Pearsons’ correlation coefficients, mean absolute error (MAE), and bias for each station. We constrained our validation to calendar year summaries rather than individual months to avoid artificially inflating the correlation by incorporating the seasonal cycle. To
not defined in this paper's own words; regression absolute-error metric
jiang2021-graph-neural-networks-molecular-representation
According to the recommendations of MoleculeNet benchmarks [ 32 ], the classification models were evaluated by the area under the receiver operating characteristic curve (AUC-ROC) for the classification tasks except the maximum unbiased validation (MUV) dataset, which was evaluated by the area under precision-recall curve (AUC-PRC) due to its extreme biased data distribution. The regression models
the capacity to represent and reason about other minds
norenzayan2012-mentalizing-deficits-belief-personal-god
Specifically, the social-cognitive capacity to represent and reason about minds-termed mentalizing, theory of mind, or mind perception [6] , [7] -also enables the mental representation of God and other supernatural agents [2] , [7] .
not defined in this paper's own words; inference about minds and intentional behavior
gervais2016-belief-god-analytic-thinking-mentalizing-morality
We have previously advanced a theoretical account of the mind-body problem inspired by the observation that ASD and psychopathy are associated with distinct deficits in social cognition [ 24 , 33 – 35 ]. While the ASD phenotype is associated with a variety of behavioral manifestations, numerous researchers identify the primary characteristic of ASD as a deficit in mentalizing (e.g. theory mind and
not defined in this paper's own words; understanding another person's thoughts and feelings
pino2016-literary-fiction-mentalizing
Empathy is the capacity to share the physiological and emotional states of other people [ 1 , 2 , 3 ]. Empathy has been recently described as including two dimensions: mentalizing and emotional sharing [ 4 – 7 ]. Mentalizing is the ability to understand what others are thinking or feeling, while the emotional sharing dimension includes the capacity to emotionally resonate with other people’s feeli
noisy intermediate scale quantum
mcclean2018-barren-plateaus-quantum-neural-networks
noisy intermediate-scale quantum
grimsley2019-adapt-vqe-quantum-computer
BOTH WORDS DOING WORK: noisy, because gate noise limits the size of circuit that can be run reliably, and intermediate-scale, meaning 50 to 100 qubits, so the acronym carries a bound on capability rather than a promise of it
preskill2018-nisq
Noisy Intermediate-Scale Quantum (NISQ) technology will be available in the near future. Quantum computers with 50-100 qubits may be able to perform tasks which surpass the capabilities of today’s classical digital computers, but noise in quantum gates will limit the size of quantum circuits that can be executed reliably
molecular operational taxonomic units
froeslev2017-amplicon-post-clustering-curation
not defined in this paper's own words; abbreviation for operational taxonomic units
mcmurdie2013-phyloseq-microbiome-analysis
Barcoded [2] amplicon sequencing of dozens to hundreds of samples [4] is a method of phylogenetic sequencing of microbiomes, often targeting the small subunit ribosomal RNA (16S rRNA) gene [3] , for which there are also convenient tools [5] and large reference databases [6] – [8] . The task of decoding the sample source of each sequence read by its barcode, followed by similarity clustering to def
operational taxonomic units
kurtz2015-spiec-easi-microbial-networks, lagkouvardos2016-imngs-16s-rrna-profiles, wilkins2019-dysbiosis-definition
not defined in this paper's own words; participant event or measurement
page2021-prisma-systematic-review-reporting-guideline
Outcome —An event or measurement collected for participants in a study (such as quality of life, mortality)
not defined in this paper's own words; bioinformatic result sensitive to databases, pipelines, and settings
berg2020-microbiome-definition-re-visited-o
Bioinformatics analysis of obtained sequence data is neither standardized nor biases that are clearly expressed. For performing the data evaluations of 16S rRNA gene sequences, free software solutions and well-working forums like Qiime2 [ 159 ] and Mothur [ 160 ] are available. Operational taxonomic units (OTUs) are used for long time to analyze high-throughput barcoding, e.g., using marker-genes
not defined in this paper's own words; what the proposed definition makes harm into - consequences, explicitly separated from behaviour categorisations, diagnosis, risk factors and environment
langham2015-understanding-gambling-related-harm-proposed
Firstly, the definition clearly delineates harm as an outcome, allowing the focus to be on consequences rather than causes or symptoms of harmful gambling. It is explicit in separating this from related, but different, issues such as categorisations of behaviour of gambling, clinical diagnosis, risk factors or the environment in which gambling occurs.
not defined in this paper's own words; count variability beyond what a Poisson model predicts
vallejos2015-basics-bayesian-single-cell
This so-called overdispersion is potentially linked to genes whose expression has a substantially larger biological cell-to-cell variability than would be expected in a homogeneous population of cells.
not defined in this paper's own words; variance above the Poisson expectation
mcmurdie2014-rarefying-microbiome-data-inadmissible
We surveyed various publicly available microbiome count data to evaluate the variance-mean relationship for OTUs among sets of biological replicates, a few examples of which are shown here ( Figure 3 ). In every instance the variances were larger than could be expected under a Poisson model (overdispersed, φ >0), especially at larger values of the common-scale mean. By definition, these OTUs are t
not defined in this paper's own words; variance greater than predicted by a GLMM error structure
harrison2018-mixed-effects-modelling-ecology
Models with a Gaussian (Normal) error structure do not require adjustment for overdispersion, as Gaussian models do not assume a specific mean-variance relationship. For generalized mixed models (GLMMs), however (e.g. Poisson, Binomial), the variance of the data can be greater than predicted by the error structure of the model ( Hilbe, 2011 ). Overdispersion can be caused by several processes infl
not defined in this paper's own words; predicted per-residue local-distance-difference score used as model confidence
varadi2021-alphafold-protein-structure-database
The predicted structures contain atomic coordinates and per-residue confidence estimates on a scale from 0 to 100, with higher scores corresponding to higher confidence. This confidence measure is called pLDDT and corresponds to the model's predicted per-residue scores
not defined in this paper's own words; predicted per-atom local accuracy
abramson2024-alphafold3
We also developed confidence measures that predict the atom-level and pairwise errors in our final structures. In AF2, this was done directly by regressing the error in the output of the structure module during training. However, this procedure is not applicable to diffusion training, as only a single step of the diffusion is trained instead of a full-structure generation (Fig. 2c ). To remedy thi
predicted local distance difference test, a per-residue confidence metric produced by AlphaFold2
mirdita2022-colabfold
For high-throughput structure prediction, we introduced several features in ColabFold. First, MSA generation can be executed in batch mode independently from model batch-inference. Second, we compile only one of the five AlphaFold2 models and reuse weights. Third, we avoid recompilation for sequences of similar length. Fourth, we implement early stop criteria, to avoid additional recycles or model
not defined in this paper's own words; change in population size isolated from age-composition change
mathers2006-projections-global-mortality-burden-disease
Second, we calculated the expected number of deaths in 2030 by taking the 2002 age-specific death rates and applying them to the 2030 projected population. The difference between this and the 2002 mortality estimates is a measure of the change in mortality expected solely on the basis of changing demography (including size and age composition of the population). We then repeated this calculation,
not defined in this paper's own words; growth that can outpace yield-driven production
ray2013-yield-trends-global-crop-production
However in Afghanistan, Iraq and Australia due to population growth outpacing production increases from the 2.4%, 0.4%, and 0.3% rates of yield increase per year there could be declines in per capita harvested rice
not defined in this paper's own words; with aging, named as a major driver of the rise in CVD counts
roth2020-global-burden-cardiovascular-diseases
From 1990 to 2019, large declines in the age-standardized rates of death, DALYs, and YLLs, together with small gradual reductions in age-standardized rates for prevalent cases and YLDs, suggest that population growth and aging are major drivers of the increase in total CVD ( Figure 1B ).
not defined in this paper's own words; reduction of intact habitat's exposure to degradation
possingham2015-optimal-conservation-outcomes-restoration-protection
The relative priority of protection and restoration can only be coherently assessed by a conservation resource allocation theory that incorporates both actions and that quantifies both their costs and benefits in a comparable manner. In particular, this theory must be temporally explicit, since both the benefits of the two actions accrue at different rates. In this paper, we incorporate restoratio
not defined in this paper's own words; designation of land as a protected area
gray2016-local-biodiversity-protected-areas
In the tropics, protection reduces deforestation 15 , 16 , 17 , loss of carbon 18 and forest fires 19 .
a management action that decreases the intact unprotected habitat exposed to degradation
possingham2015-optimal-conservation-outcomes-restoration-protection
In our model, transitions of land between the four states are driven by two actions and two processes. The two actions, protection and restoration, are entirely determined by the managers. At each point in time across a T -year project, managers can allocate a varying proportion (0≤ u ( t )≤1) of a fixed annual budget ( B ) to protection, and the remainder 1— u ( t ) to restoration. We note that t
continuity of coherent thoughts, preferences, choices, and personal identity
ianca2017-new-human-rights-neuroscience-neurotechnology
In short, the right to psychological continuity ultimately tends to preserve personal identity and the coherence of the individual’s behavior from unconsented modification by third parties. It protects the continuity across a person’s habitual thoughts, preferences, and choices by protecting the underlying neural functioning. As Paul Tiedemann points out, we understand ourselves as personal unitie
protection of identity and personality across time
schleim2021-neurorights-history-brain-control
As already stated in the introduction, the four main neurorights are: (1) cognitive liberty; (2) mental privacy; (3) mental integrity; and (4) psychological continuity. The first, sometimes also called the right to mental self-determination, has two aspects: access to neurotechnologies and protection against their coercive and unconsented use; cognitive liberty is also considered the most fundamen
not defined in this paper's own words; preservation of identity and mental life across time
ienca2021-on-neurorights
Some authors have argued for the recognition of a fourth family of neurorights related to the protection of personal identity. Borrowing the terminology from the psychological-continuity account of personal identity ( Van Inwagen, 1997 ), Ienca and Andorno (2017a) called this right “psychological continuity” and described it as the right to preserve “people’s personal identity and the continuity o
not defined in this paper's own words; behavioral movement toward fitness maximization
andrighetto2018-cognitive-bias-cooperation-social-dilemmas
Apart from behavioural economics, evolutionary game theory is another research field in which considerable attention has been devoted to the study of human behaviour, offering, for instance, an updated view on cognitive biases 22 – 24 . The work on the evolution of human cooperation in particular boasts a rich mathematical modelling legacy 25 , 26 complemented by a more recent track of social dile
not defined in this paper's own words; natural selection acting on a lineage
moran2015-hologenome-helpful-hollow
Selection acts on Buchnera to increase female fecundity and on the aphid to maintain the Buchnera upon which it depends.
not defined in this paper's own words; natural selection acting on genomic regions
sheehan2016-deep-learning-population-genetic-inference
In their method, Galtier et al. assumed that demographic events affect the entire genome, whereas selection is a local phenomenon.
not defined in this paper's own words; additional analyses whose performance should be described
vonelm2007-strobe
Describe all statistical methods, including those used to control for confounding (b) Describe any methods used to examine subgroups and interactions (c) Explain how missing data were addressed (d) Cohort study—If applicable, explain how loss to follow-up was addressed Case-control study—If applicable, explain how matching of cases and controls was addressed Cross-sectional study—If applicable, de
not defined in this paper's own words; analyses varying codes or assumptions
benchimol2015-record-routinely-collected-health-data
In addition to code lists provided in the article (or an online appendix), the authors should include a reflection on whether the choice of codes/algorithms used in the study might lead to bias. Such bias could include misclassification bias, ascertainment bias, and bias due to missing data. If sensitivity analyses were conducted based on different sets of codes/algorithms, these should also be de
not defined in this paper's own words; checks of priority robustness to range and taxonomic assumptions
selig2014-global-priorities-marine-biodiversity-conservation
In the marine realm, where there are many wide-ranging and cosmopolitan species, patterns of biodiversity derived from maximum range maps like those used here may overestimate presence on continental shelf areas. These presence/absence range maps implicitly assume homogeneous species occurrence and thus can overestimate the relative importance of shelf and slope habitat for truly oceanic species.
not defined in this paper's own words; number of modeled species present in a spatial cell
selig2014-global-priorities-marine-biodiversity-conservation
Across all species distributions, we calculated species richness and both metrics of endemism within a global grid of 2,591.4 km 2 icosahedral Snyder equal area hexagons ( n = 197,316). We assigned species to hexagons based on the overlap between the raster grid (i.e. species from AquaMaps) or the polygon data (i.e. corals and seabirds) and the hexagon grid. In other words, if a species range over
not defined in this paper's own words; the number of species in an experimental assemblage
lefcheck2015-biodiversity-ecosystem-multifunctionality
The complex interactions among species and functions raise two opposing possibilities when investigating the relationship between species richness (hereafter, ‘biodiversity') and ecosystem multifunctionality.
not defined in this paper's own words; the number of species present in an area
zabel2019-cropland-expansion-markets-biodiversity
This metric combines species richness with a measure of endemism (i.e. the range sizes of species within an assemblage) and thus indicates the relative importance of a site for conservation.
not defined in this paper's own words; the chance a study detects an effect that exists
brussow2020-gut-dysbiosis-concept
A meta‐analysis can increase the statistical power of many small studies by detecting true signals against a background of false positives.
not defined in this paper's own words; ability to distinguish true differences
mcmurdie2014-rarefying-microbiome-data-inadmissible
A mathematical proof of the sub-optimality of the rarefying approach is presented in the supplementary material ( Text S1 ). To help explain why rarefying is statistically inadmissible, especially with regards to variance stabilization, we start with the following minimal example. Suppose we want to compare two different samples, called A and B , comprised of 100 and 1000 DNA sequencing reads, res
not defined in this paper's own words; the pre-study repeated-design probability of rejecting the test hypothesis when a specified alternative is correct
greenland2016-statistical-tests-p-values-confidence-intervals-power
The power of a test to detect a correct alternative hypothesis is the pre-study probability that the test will reject the test hypothesis (e.g., the probability that P will not exceed a pre-specified cut-off such as 0.05). (The corresponding pre-study probability of failing to reject the test hypothesis when the alternative is correct is one minus the power, also known as the Type-II or beta error
not defined in this paper's own words; embodied, embedded, enactive, and extended cognition
stanciu2023-consciousness-4e-cognition-and-aristotle-a-f
The paradigm of the so-called 4E cognition (embodied/embedded/enactive/extended) argues for the causal role of both the body and its natural, social, and cultural environments in human cognition
not defined in this paper's own words; embodied, embedded, extended, and enactive mind
van-der-schijff2018-4e-music-pedagogy-self-organization
The last three decades, however, have witnessed the development of research paradigms that depart from functionalism in a number of important ways. Many of these perspectives fall under the rubric of ‘4E Cognitive Science’ (4ECS)—an umbrella term used to capture the different perspectives associated with the development of a ‘new science of the mind’ [ 6 , 7 ]. Despite the diversity of research co
proposed as a set of the same abundant ORGANISMS present in all individuals, and relocated in the same sentence: better defined at a FUNCTIONAL than an organism level, because gene repertoires agree where taxonomies do not
thursby2017-introduction-to-the-human-gut-micr
Suggestions have been made of the presence of a ‘core microbiota’, proposed to be a set of the same abundant organisms present in all individuals. However, more similarity can be observed in the repertoire of microbial genes present between individuals than the taxonomic profile, suggesting that the core microbiota may be better defined at a functional rather than organism level
not defined in this paper's own words; stable community members shared across comparable habitats
berg2020-microbiome-definition-re-visited-o
Based on co-occurrence analyses and experimental data capturing temporal and spatial dynamics of microbiomes, researchers have sought to define a core microbiota. This is indeed helpful as native microbiomes are often highly complex, comprising thousands of species across different kingdoms. Defining core microbiota can facilitate discrimination of the stable and permanent members of a microbiome
how biodiversity simultaneously affects the many ecosystem functions present in nature
lefcheck2015-biodiversity-ecosystem-multifunctionality
Solving these problems requires considering how biodiversity simultaneously affects the multitude of ecosystem functions present in nature, which we define as ecosystem multifunctionality .
the ability of an ecosystem to deliver multiple functions or services simultaneously
hu2021-aridity-biodiversity-soil-multifunctionality
sum of the inverse extents of occurrence of all species present in a grid cell
zabel2019-cropland-expansion-markets-biodiversity
the sum of inverse range sizes of all species present in a grid cell
meyer2015-global-priorities-biodiversity-distributions
external quantum efficiency
chen2017-thin-single-crystal-perovskite-solar-cells, sun2018-low-cost-polymer-donor-solar-cells
external quantum efficiency, the product of internal quantum efficiency and out-coupling
kaji2015-purely-organic-electroluminescent-material
EQE ( η EQE ) is the product of the internal quantum efficiency (IQE) and light out-coupling factor ( η out ), η EQE =IQE × η out .
not defined in this paper's own words; influence of language form and structure on thought
stephens2011-swearing-euphemisms-linguistic-relativity
Linguistic relativity is concerned with a profound but subtle question: Does the language you speak affect the way you think? Of course, the messages expressed in language do influence thought. That is what language is for – to implant thoughts and feelings into the minds of others. What is not so obvious, however, is whether the form of a language can also influence thought. The answer to this qu
not defined in this paper's own words; language-specific shaping of nonverbal processing
thierry2016-neurolinguistic-relativity-language-cognition
There is now substantial neurophysiological evidence validating psycholinguistic data and theoretical linguistic accounts of linguistic relativity: Language(s), human perception, and aspects of cognition that may be construed as nonverbal interact in a rich and complex fashion. At the forefront of the current inquiry in this field is the question of the causal role of language and the depth of its
entanglement of mental plasticity with the plasticity or stability of material culture
malafouris2021-mark-making-human-becoming
My general hypothesis is that mark making constitutes a salient point of intersection between matter and memory; one in which the plasticity of the mind becomes entangled with the plasticity (or stability) of material culture. That is what I mean by metaplasticity (Malafouris 2008a , b , 2009 , 2010a , 2013 , 2015 ). Our perception of human cognitive evolution depends on how exactly we describe an
not defined in this paper's own words; recursive plasticity of brain-body-culture
malafouris2018-mind-material-engagement
MET proposes that we can only understand human beings (what is it to be human) by understanding the modes of human cognitive becoming (how human minds become) (Gosden and Malafouris 2015 ; Malafouris 2015 , 2016a , b ). These modes of becoming are actualised at different temporal and spatial scales (personal, peripersonal, and extrapersonal) by means of material engagement. That also means that ME
Photovoltaic power conversion efficiency
sun2018-low-cost-polymer-donor-solar-cells
power conversion efficiency
bin2016-non-fullerene-polymer-solar-cells, chen2017-thin-single-crystal-perovskite-solar-cells, holliday2016-p3ht-polymer-solar-cells-acceptor, zhao2016-polymer-scaffold-self-healing-perovskite
a regional change on whose sign at least three quarters of the experiments agree
tabari2020-climate-flood-extreme-precipitation
change for each climate regime is considered robust when at least 75% of experiments agree on the sign of the change.
when at least 67% of climate models agree on the sign of the change
pendergrass2017-precipitation-variability-warmer-climate
not defined in this paper's own words; host plus resident microorganisms taken as one entity performing immune and metabolic functions
rinninella2019-what-is-the-healthy-gut-microbiota
Considering the characteristics of gut microbiota such as the large diversity, the stability and resilience, and the symbiotic interaction with the host, we can define the host and the microorganisms inhabiting it as a “superorganism” \ [8, 9\] which performs immune and metabolic functions \ [1\]. Gut bacteria are key regulators of digestion along the gastrointestinal tract; commensal bacteria pla
not defined in this paper's own words; host plus resident microorganisms as one entity - a name the paper attributes to others rather than adopting
thursby2017-introduction-to-the-human-gut-micr
As a result of the vast number of bacterial cells in the body, the host and the microorganisms inhabiting it are often referred to as a ‘superorganism’
the ratio of mean biomass ( μ ) to its temporal s.d. ( σ )
ma2017-climate-warming-plant-biomass-stability
meaning that there is an agreement in responses on the items provided at different time points (with identical parameters and prompt designs)
bodroza2024-personality-testing-large-language-models
These terms are defined several times over and no one definition accounts for any other. The decoy control reached nothing either, so this is not an instrument failure — the definitions simply share nothing.
Goffman's definition, as the paper reports it: an “attribute that is deeply discrediting”
andersen2022-definition-of-stigma
Goffman defines stigma as an “attribute that is deeply discrediting” and as something that reduces its bearer “from a whole and usual person to a tainted, discounted one.”
Link and Phelan's definition, as the paper reads it: six necessary conditions, “labeled differences, stereotypes, separation, status loss and discrimination, power, and emotional reaction”
andersen2022-definition-of-stigma
We therefore consider Link and Phelan's (and partly Yang and Collins') definition of stigma to consist of six necessary conditions. For there to be stigma there must be labeled differences, stereotypes, separation, status loss and discrimination, power, and emotional reaction.
Stigma may be viewed as a form of social inequality. It can be directed against sexual orientation, but also against race or ancestral origin.
buot2014-distal-sociological-determinants-hiv
a discrediting trait that reduces individuals to ‘spoiled identities’
king2026-anticipated-stigma-in-nursing
for Link and Phelan it exists as a matter of degree
andersen2022-definition-of-stigma
It is worth adding thatLink and Phelan maintain that stigma exists as a matter of degree.
groups, not individuals, are its target, while individuals are its victims
andersen2022-definition-of-stigma
We suggest that groups, not individuals, are the target of stigma, though it is individuals who may be the victims of it.
negative labels on genuinely harmful behaviours can be legitimate; the challenge is to dissociate them from the identity of the people who engage in them
fischer2020-stigma-concept-opioid-crisis
Rather, the real, while presumably more complex challenge for a meaningful addressing of stigma appears to be, as far as possible, to dis-associate concrete, while undesirable or shunned behaviors and their negative labels from the general identity of those individuals or human beings who engage in or are associated with them, or least better consider and contextualize their real-life contexts, bu
the ascription of negative attributes or assumptions (or ‘stereotypes’ or ‘mark of disgrace’) on a person because of certain properties or behaviours outside their control, and consequential loss in social status, opportunity, and care or support
fischer2020-stigma-concept-opioid-crisis
the reports treat it as an exclusively negative force to be purged; the author argues its dynamics are more complex and multi-dimensional
fischer2020-stigma-concept-opioid-crisis
While the reports’ analyses suggest multiple ‘pathways’ or ‘layers’ of stigma, they essentially appear to suggest that ‘stigma’ is an exclusively negative force in functioning and outcomes, and brings on extensive harm in whatever it touches or affects; therefore, any available measures ought to be deployed for it to be ‘purged’ for its major, consequential harms to be reduced in desirable ways fo
there is stigma if and only if there is labelling, negative stereotyping, linguistic separation, and power asymmetry
andersen2022-definition-of-stigma
as a single leaky accumulator with one time constant, under which more sound always means better performance
Teng2016-testing-multi-scale-processing-in-the-audito
Previous models of temporal integration typically assume leaky integration with a time constant of hundreds of milliseconds, based on studies such as loudness summation 15 , 16 , signal detection in noise 17 , 18 , and temporal integration at threshold 13 , 19 , 20 , 21 , 22 , in which listeners’ performance increases continuously with sound duration and typically achieves a plateau above 200 ms.
as fast discrete sampling then concatenation, where the long scale is assembled from short samples
Teng2016-testing-multi-scale-processing-in-the-audito
The multiple-looks model suggests that temporal integration is a process of multiple timescales instead of one, but the longer timescale is assembled on the basis of concatenated short samples.
as two independent concurrent windows, where the long scale is not built from the short one and each does its own job
Teng2016-testing-multi-scale-processing-in-the-audito
In contrast, the 2TWI model suggests that increased stimulus length may not necessarily increase performance, because representation and processing of local details might function best only at a time range of tens of milliseconds
conscious: extended object-space interdependence
forti2025-what-is-consciousness-and-what-it-is-for-an
Secondly, conscious integration does not occur through relations between points, or between components that can be traced back to points. It is an integration that occurs in extended form and is based primarily on the relationship between object and space.
integration, involves respect and collaboration between different views of health and healing, resulting in mutual transformation
gale2014-sociology-complementary-alternative-medicine
non-conscious: point-like computational interconnection
forti2025-what-is-consciousness-and-what-it-is-for-an
Last but not least, it is not a high level of NC integration of information that determines consciousness. On the contrary, it is conscious integration that enables high levels of NC integration, especially in the immediate term. This may justify the correlation found between consciousness and high levels of integration in neuronal structure ( Koch et al., 2016 ), although the causal action is exa
used in two senses the paper separates: incorporation, with asymmetry of power favoring biomedicine, and mutual transformation, with more symmetry
gale2014-sociology-complementary-alternative-medicine
The important distinction between integration as incorporation (with asymmetry of power favoring biomedicine and the orthodox professions) or as mutual transformation (with more symmetry and genuine complementarity) is not always acknowledged in the debates about integration.
a holistic and multidimensional state of wellness, shaped by connections to family, community and culture
garvey2021-aboriginal-wellbeing-model
Holistic health referenced the idea that being healthy was an essential component of wellbeing; health was described as a holistic and multidimensional state of wellness often determined the quality of one’s connections to family, community and culture.
a person may consider themselves healthy despite having biomedical problems
bircher2014-defining-health-determinants
the Model includes the possibility for people to consider themselves healthy despite having biomedical problems.
a state of wellbeing emergent from conducive interactions between individuals' potentials, life's demands, and social and environmental determinants
bircher2014-defining-health-determinants
defined positively in relation to maintainability, ease and functioning, not as the absence of disease
saad2020-philosophy-of-health
Rather than define health as the absence of disease (as seen in BST), notice here how we instead define disease in relation to health; and we define health in relation to maintainability , ease , and functioning .
the WHO definition read as aspirational and universal goals without guidance on how to realize them
bircher2014-defining-health-determinants
The WHO definition sets out aspirational and universal goals without much guidance on how these goals could be realized. It is not clear, for example, how governments should plan
the state of maintainable-ease of functioning
saad2020-philosophy-of-health
Five principles of health are presented: (1) Health is the maintainable-ease of functioning; (2) Maintainable-ease of functioning emerges from multiple levels ; (3) At each level, maintainable-ease of functioning is generated by systems ;
a self-referential and holistic constraint within a conceptual structure
oizumi2014-iit-phenomenology-mechanisms-consciousness
Meaning is thus both self-referential (internalistic) and holistic .
embodied, extra-sensory-information sense: information an artwork communicates beyond its form and availability for evaluation (e.g. mate quality)
coevolutionary-aesthetics-in-human-and-biotic-artworlds
Art could be required to have meaning, or embodied meaning (Danto 1981 , 1984 , 1997 ). Meaning is any additional information communicated by an artwork to the observer other than its existence, its objective form, and its availability for evaluation. Like human art, however, biotic art can also encode extra-sensory meaning such as information about mate quality. For example, the carotenoid pigmen
links from a polysemous word into multiple semantic regions
stella2018-multiplex-mental-lexicon-learning
Even though potentially causing ambiguity in communication, polysemy is a universal property of all languages 6 , 25 . Conventionally when constructing semantic networks 6 , 17 , 60 word senses and meanings can be represented by links and polysemic words can have links related to different semantic areas (e.g. “character” is linked to “nature” in the context of complexion but also to “font” in the
not defined in this paper's own words; felt intrinsic substructure
albantakis2023-integrated-information-theory-4-consciousness
In addition to empirical work aimed at validating the theory, much remains to be done at the theoretical level. According to IIT, the meaning of an experience is its feeling—whether those of spatial extendedness, of temporal flow, or of objects, to name but a few (“the meaning is the feeling”). This means that every meaning is identical to a sub-structure within a current Φ -structure—a content of
semantic-value sense versus usage sense: what a term means as against how speakers are disposed to use it
koch2020-engineering-what
Divergence: What a term t actually means in a language L can diverge from what many (or even most) speakers of L think t means and from their dispositions to use t.
moral injury
litz2022-moral-injury-syndrome
motor imagery
forenzo2024-deep-learning-bci-continuous-tracking
multiple intelligences
attwood2022-multiple-intelligences-semantics
the outcome associated with exposure to PMIEs
litz2022-moral-injury-syndrome
the user imagines the feeling or sensation of moving a body part, without executing the movement
forenzo2024-deep-learning-bci-continuous-tracking
Sifneos's etiological model splits it into primary (a neuroanatomical or physiological defect, possibly hereditary) and secondary (childhood trauma, adult trauma or sociocultural factors)
lopezmunoz2019-alexithymia-concept-history
In view of the approaches considered, Sifneos soon proposed a general etiological model for alexithymia that, to begin with, subdivided it into two types: primary and secondary. The primary one had its origin in a neuroanatomical or physiological defect, possibly hereditary in nature, whereby the communication between the limbic system and the neocortex would not function properly, affecting hemis
in 1972 Sifneos coined as ‘alexithymia’, which is formed by the roots of several Greek words, and literally means “lack of words for emotion”
lopezmunoz2019-alexithymia-concept-history
the early explanatory model rests on four premises: difficulty identifying and describing feelings, difficulty telling feelings from bodily sensations, impoverished fantasy, and an outward-oriented cognitive style
lopezmunoz2019-alexithymia-concept-history
based on four elementary premises: 1) difficulty in identifying and describing feelings; 2) difficulty in distinguishing between feelings and bodily sensations related to emotional activation; 3) restrained and limited imaginative processes, adopting the guise of an impoverished fantasy; and 4) a cognitive style oriented toward the outside ( 1 ).
understood in recent research as a stable personality trait
lopezmunoz2019-alexithymia-concept-history
recent research has focused on exploring the links of alexithymia, understood as a stable personality trait present in some patients, and various medical and psychiatric conditions.
a form of agreement that has the purpose of accommodating conflicting views or claims
spang2023-compromise-political-theory
an agreement that leaves each party with regret or dissatisfaction
spang2023-compromise-political-theory
Compromise also differs from consensus in that the former characteristically involves a sense of regret or dissatisfaction ( Lepora, 2012 ; Lepora and Goodin, 2013 ).
for deliberative democrats, something reached through the exchange of reasons
spang2023-compromise-political-theory
Challenging the traditional “division of labor” between compromise- and consensus-building processes, scholars of deliberative democracy increasingly emphasize a connection between compromise and deliberation.
on the traditional view, the outcome of bargaining in negotiation, not of deliberation
spang2023-compromise-political-theory
Traditionally, compromise is considered to be the outcome of negotiation processes during which the involved parties bargain for the best possible outcome.
Conspiracy theories are attempts to explain events as the secret acts of powerful, malevolent forces [7] , [8] , [9] , [10] , [11] .
jolley2014-the-effects-of-anti-vaccine-conspiracy-theories
Many previous studies have found a negative association between health-protective behaviours and belief in the specific form of misinformation popularly known as ‘conspiracy theory’.
allington2020-health-protective-behaviour-social-media-usage-and
a largely fictional, faith-accepted set of beliefs and narratives that links and gives meaning to events
tangherlini2020-conspiracy-narrative-frameworks-web
In the following work, we differentiate between conspiracy theories, which are largely fictional accounts that comprise, “scenarios made up of many beliefs and narratives which are accepted on faith and used to link and give meaning to stressful events” [ 21 ], and actual conspiracies, which are factual events comprised of malign actors working covertly, often in an extralegal manner, to effect so
the conspiracy theory definition presented to participants, which explicitly says the truth of the matter usually cannot be decided
bruder2013-measuring-individual-differences-i
“A conspiracy theory is a theory that provides an alternative explanation to the established understanding of a historical or current event.
k-point sense: the tangency order between a curve and a level set measured by vanishing derivatives
li2023-developable-singularities
Now, we should address the next concept regarding the contact of curves with some surfaces. Let F: 𝐸 1 3 → 𝑅 be a regular function, and 𝛾 : 𝑅 → 𝐸 1 3 be a smooth unit speed timelike Frenet–Serret curve. We say that 𝛾 ( 𝑠 ) and 𝐹 − 1 ( 0 ) have k-point contact for 𝑠 = 𝑠 0 if the function 𝑔 ( 𝑠 0 ) = 𝐹 ∘ 𝛾 satisfies 𝑔 ( 𝑠 0 ) = 𝑔 ′ ( 𝑠 0 ) = 𝑔 ″ ( 𝑠 0 ) = . . . = 𝑔 ( 𝑘 − 1 ) ( 𝑠 0 ) = 0 , and 𝑔 ( 𝑘
nonphysical sense: in-person two-way conversation of at least three words without skin contact
mossong2008-social-contacts-mixing-infectious-disease
Diaries recorded basic sociodemographic information about the participant, including employment status, level of completed education, household composition, age, and sex. Participants were assigned a random day of the week to record every person they had contact with between 5 a.m. and 5 a.m. the following morning. Participants were instructed to record contacted individuals only once in the diary
there should be no contact between the upper limbs and the head/trunk or external surface
cunningham2019-automated-posture-estimation-cerebral-palsy
two residues form a contact if they are spatially proximal in the native structure, i.e., the Euclidean distance of their C β atoms less than 8Å
wang2017-protein-contact-deep-learning
Cognitive vitality
varpaei2024-postoperative-cognitive-dysfunction
CV refers to an individual’s capacity to adjust to cognitive changes and maintain an optimal level of cognitive functioning, life satisfaction, and independent living by effectively balancing their energy and personal resources.
climate variability
burrell2020-drylands-desertification-climate-change
coefficient of variation
christensen2021-perineuronal-nets-grid-cell-network, tabari2020-climate-flood-extreme-precipitation
critical velocity
jones2017-critical-power-concept
Existential loneliness is the result of a broader separation related to the nature of existence and, in particular, a lack of meaning in life.
vantilburg2021-social-emotional-existential-loneliness
a feeling of fundamental separateness from others and the wider world, not simply as the absence of meaningful relationships and negative emotional experience
mansfield2021-loneliness-conceptual-review
for Moustakas, inherent in human existence, such that everyone can identify as a solitary individual
vantilburg2021-social-emotional-existential-loneliness
For Moustakas (1961) , existential loneliness is inherent in human existence, such that everyone can identify as a solitary individual.
in this article a negative experience only; the positive side is called solitude instead
vantilburg2021-social-emotional-existential-loneliness
In this article, we focus on existential loneliness as a negative experience, and we aim to use the concept of solitude for when people want to be alone with positive purposes ( Lay et al., 2020 ).
a generative and contested collective, not the population targeted by established public health
hinchliffe2018-healthy-publics-enabling-cultures
To be clear, this sense of healthy publics as a generative and contested collective is quite different to more established senses of public health.
approached but not reached by the campaign: working with children in its design and delivery
mold2019-anti-smoking-campaigns-children
Although views of the target audience of the Nick O’Teen campaign were still some way from the notion of ‘healthy publics’, the HEC’s desire to work with children in designing the campaign and to involve them in its delivery point to the development of a more sophisticated understanding of ‘the public’ or particular publics.
dynamic collectives of people, ideas and environments that can enable health and well-being
hinchliffe2018-healthy-publics-enabling-cultures
extended here to publics that are not self-defining and reach beyond an intervention's intended scope
tupper2020-healthy-publics-movement-volunteering
We take the concept in complementary directions onto healthy publics that are not of necessity self-defining and that have effects beyond the intended scope of an experimental intervention.
The tendency for social partners to temporally co-ordinate their behaviour
bowshermurray2022-interpersonal-synchrony-autism
a social signifier promoting affiliation, rapport, bonding, helping and co-operation
bowshermurray2022-interpersonal-synchrony-autism
Throughout the lifespan, IS serves as a social signifier and promotes various social outcomes, including increased affiliation ( Hove and Risen, 2009 ; Tunçgenç et al., 2015 ), rapport ( Vacharkulksemsuk and Fredrickson, 2011 ), bonding ( Tarr et al., 2015 ; Tunçgenç and Cohen, 2016 ), helping ( Tunçgenç and Cohen, 2018 ), and co-operation ( Rabinowitch and Meltzoff, 2017 ).
possibly dissociated from social bonding for autistic people
bowshermurray2022-interpersonal-synchrony-autism
Taken together, these findings suggest that, for autistic people, IS may be somewhat dissociated from social bonding.
the joint product of several mechanisms working together
bowshermurray2022-interpersonal-synchrony-autism
IS emerges as a function of multiple mechanisms operating in concert with each other ( Konvalinka et al., 2010 ; Delaherche et al., 2012 ; Mills et al., 2019 ; McNaughton and Redcay, 2020 ).
As the baselines of phase-locking may be different across frequency bands, which may be affected by power distributions with a 1/f characteristic, a shuffling method of onset time was used to avoid this confound. Within each condition, the onset time of the stimulus was randomly chosen on each trial and a new dataset for each condition was created. The same analysis of ITC was applied on this new dataset. To create a distribution of shuffled ITCs, this shuffling procedure was repeated 1,000 times.
Teng2017-concurrent-temporal-channels-for-auditory-pr
information and communication technologies
polancolevican2022-social-media-literacy-concept
isolated tumor cells
litjens2016-deep-learning-histopathology
isothermal titration calorimetry
chang2017-coacervates-sequence-entropy-control
includes the giving back of advantages to another person for-profits attained
thomas2021-social-capital-financial-literacy
people expect the system to be reciprocal, on the believe that one day the person might have an organ if it is need it
martinez-lopez2023-trust-organ-donation
the attribute of collegiality that referred to an unreserved and mutual exchange of professional elements between colleagues
kangasniemi2023-nurses-collegiality
the notion that (the capacity for) right holding is conditioned on (the capacity for) duty bearing
stucki2020-legal-animal-rights
A scoping review is a preliminary assessment of the literature for potential size and scope with the aims of identifying the nature and extent of research evidence.
masterson2022-mapping-definitions-of-co-production-and-co
a means of summarising current research knowledge and identifying gaps in existing research (Arksey and O’Malley 2005 ; Grant and Booth 2009 )
walsh2017-social-exclusion-older-persons
a systematic, but economic evidence synthesis, focusing on central concepts and an overview of the current state of research
kuhne2021-prognostic-awareness
not defined in this paper's own words; a literature review that maps what has been written on a topic rather than pooling results
pecnikar-oblak2023-social-inclusion-sport-disability
This review was conducted using scoping review methods, as scoping reviews are often conducted to examine and clarify definitions used in the literature [ 33 , 34 ].
37 More technically, Pintrich et al. 38 described self-regulation as ‘an active, constructive process whereby learners set goals for their learning and then attempt to monitor, regulate and control their cognition, motivation and behaviour, guided and constrained by their goals and the contextual features in the environment’.
hattie2016-learning-strategies-a-synthesis-and-conceptual-model
refers to any effort to actively control behaviour by inhibiting dominant and automatic behaviours, urges, emotions or desires, and replacing those with goal-directed responses
kwasnicka2016-behaviour-change-maintenance-theories
the attribute that referred to nurses’ autonomy
kangasniemi2023-nurses-collegiality
the regulation of thinking, emotion, behavior and attention through deliberate or specific mechanisms
shen2024-academic-resilience-nursing-students
Stimulus-specific adaptation describes how auditory neurons respond in an “oddball” paradigm, in which a frequent stimulus is interleaved with a rare stimulus.
Yavorska2016-somatostatin-expressing-inhibitory-interneur
Stimulus-specific adaptation, a decrease in neural responses to a repeated tone which is specific to the physical features of this tone, observed in different stages of the auditory pathway
Ruusuvirta2013-auditory-cortical-and-hippocampal-system-mis
The MMR can be dissected into two key components characterizing the surprise (deviance detection—DD) and adaptation (stimulus-specific adaptation—SSA) responses by comparing the control condition to the deviant or standard condition, respectively.
Zhou2020-stimulus-specific-regulation-of-visual-oddba
not defined in this paper's own words; reduced responses to a frequent tone, which SOM cells both CONTRIBUTE TO and EXPERIENCE
Yavorska2016-somatostatin-expressing-inhibitory-interneur
Suppression of SOM neurons reduces stimulus-specific adaptation in other cortical neurons, increasing PN responses to the frequent tone.
creation and manipulation of mental representations, which includes stimulus perception
madsen2022-common-stimulus-synchronizes-brains-hearts-eyes
fewer words like think, unsure
ashokkumar2022-group-identity-natural-language
here, words used to work through or question unresolved issues
ashokkumar2022-group-identity-natural-language
Second, people with strong identities used fewer cognitive processing words—which are typically used to work through or question unresolved issues—suggesting that strong group identity stills the mind when it comes to group-related issues.
an intrinsic desire to support aging parents and an extrinsic desire to adhere to Chinese societal moral tenets
xiao2024-filial-piety-caregiving
for CCA families in the U.S., a psychological factor in balancing traditional Chinese culture with the host culture
xiao2024-filial-piety-caregiving
For Chinese and Chinese-American (CCA) families living in the United States (U.S.), filial piety is a psychological factor associated with balancing the traditional Chinese culture with the new host culture
located at the intersection of culture, religion and spirituality among immigrant groups
xiao2024-filial-piety-caregiving
Therefore, filial piety is located at the intersection of culture, religion, and spirituality among different ethnic immigrant groups.
According to IACO * ( 2018 ), informal care is defined as unpaid care provided by family members, neighbors, friends or significant others who play the role of career to support someone with declining physical capacity, debilitating cognitive condition or life-limiting chronic illness
cruz2023-informal-care-concept
problematic in four dimensions: it hides the gender cut, does not make explicit that it is work, invites confusion with informal employment, and does not separate family from community
cruz2023-informal-care-concept
we argue that this concept is problematic in four dimensions: it makes the gender cut and sexual division invisible; it does not render explicit that we are dealing with work, regardless of its unpaid nature; the reference to informality may lead to confusion with the informal employment of care professionals; it does not distinguish the spaces in which this work takes place and the social relatio
scientifically unstable, and delicate in public policy because it does not say what is to be transformed about its informality
cruz2023-informal-care-concept
As we have seen, the concept of informal care is scientifically unstable and its use in public policies is delicate, particularly because it does not allow us to distinguish what is intended to be transformed as regards its informality.
Intersystem crossing
kaji2015-purely-organic-electroluminescent-material
in neural work a measure of shared stimulus processing; in physiology often read as co-presence
madsen2022-common-stimulus-synchronizes-brains-hearts-eyes
In the context of physiological or behavioral signals, ISC is often referred to as “interpersonal synchronization,” implying that 2 or more people are co-present in a given context.
the average Pearson's correlation between that subject and all others
madsen2022-common-stimulus-synchronizes-brains-hearts-eyes
a precarious, rate-dependent state of stability that is relatively long-lived
breslauer2023-stability-political-physical-science
not defined in this paper's own words; a state that is not the lowest-energy phase
kageyama2018-multiple-anion-materials
The metastability of mixed-anion compounds increases the complexity of synthesis and can limit the ways in which these materials can be used in devices.
the bridging concept of the paper, familiar in physics and chemistry but less so to social scientists; an intermediate state between instability and stability
breslauer2023-stability-political-physical-science
we foreground the idea of “metastability,” a term familiar to students of physics and chemistry, but perhaps less familiar to social scientists. It can be an intermediate state between instability and stability.
oriented towards preventing risks such as mental and physical health problems and interaction harms such as cyberbullying
polancolevican2022-social-media-literacy-concept
Consequently, social media literacy is oriented towards the prevention of risks such as mental and physical health problems [ 51 , 53 ], as well as other types of consequences that can arise from interactions between people, for example cyberbullying, information spreading, and other difficulties
social media literacy is an update of media literacy [ 47 ], being oriented to favoring people being able to perform adequately on social media considering the various difficulties that can arise
polancolevican2022-social-media-literacy-concept
treated as a protective factor in health interventions against eating disorders and idealized appearances
polancolevican2022-social-media-literacy-concept
developing interventions to reduce eating disorders and the negative impact of exposure to social media because they show idealized appearances, such that social media literacy is considered a protective factor [ 24 , 61 ].
a rare perceptual condition causing unusual sensations, which are triggered by the stimulation of otherwise unrelated modalities
jewanski2020-synesthesia-concept-history
its shared defining characteristics: automatic, consistent over time, present from early childhood, running in families, in about 4% of the population
jewanski2020-synesthesia-concept-history
Despite their variety, all kinds share certain defining characteristics: They tend to be automatic, are consistent over time, present from early childhood, run in families, and are experienced by approximately 4% of the population
since 1902 also used for poets' stylistic devices and correspondences within the arts, beyond involuntary additional sensations
jewanski2020-synesthesia-concept-history
From this point on, the term synesthesia was used not only for involuntary additional sensations, as we have defined this phenomenon at the beginning of this article, but also for the describing stylistic devices of poets, even outside of France, and later for correspondences within the arts in general.
Study Variables The response variable was acceptance of a hypothetical COVID-19 vaccine in Indonesian population.
harapan2020-acceptance-of-a-covid-19-vaccine-in
Vaccine acceptance was defined as the percentage of respondents who answered ‘yes’ to the question, ‘If a COVID-19 vaccine becomes available in [country], would you take it?’.
arce2021-covid-19-vaccine-acceptance-and-hesitancy-in
a position ranging from passive acceptance to active demand
murphy2021-psychological-characteristics-associated-with-covid-19-vaccine
HERE, TRUST IN THE IMPORTANCE, SAFETY AND EFFECTIVENESS OF VACCINES, plus religious compatibility. Four components, and the VCI is built to measure exactly those four `while being MINIMAL, thus allowing ready integration into existing global surveys`. THE INSTRUMENT'S SHORTNESS IS A DESIGN GOAL, not a compromise
figueiredo2020-mapping-global-trends-in-vaccine-c
These findings have resulted in the development of a Vaccine Confidence Index (VCI) survey tool (first implemented in 2015 14 ) to measure individual perceptions on the safety, importance, effectiveness, and religious compatibility of vaccines. The VCI questionnaire has the primary focus of measuring confidence across multiple countries while being minimal, thus allowing ready integration into exi
not defined in this paper's own words; trust in the importance, safety and effectiveness of vaccines, plus compatibility with religious beliefs
figueiredo2020-mapping-global-trends-in-vaccine-c
Although immunisation coverage is reported administratively across the world, no similarly robust monitoring system exists for vaccine confidence.
vaccine confidence operationalised as three statements on importance, safety and effectiveness
figueiredo2020-mapping-global-trends-in-vaccine-c
Vaccine confidence was measured through three survey statements relating to individual perceptions on the importance, safety, and effectiveness of vaccines ( table ).
2-dimensional
wang2024-complexity-entropy-natural-patterns
two-dimensional
branny2017-strain-induced-quantum-emitter-arrays, kim2015-large-area-multilayer-hexagonal-boron-nitride, li2015-strain-textured-mos2-artificial-atoms
measures the permeability of the matrix between habitat patches for the target species
shaw2024-tick-borne-pathogen-landscape-ecology
patterns of statistical dependence in brain activity
novelli2022-edge-centric-brain-functional-connectivity
hidden Markov model
ehsan2018-signal-peptide-classification-model, liu2019-deepmod-nanopore-dna-modifications, sunnaker2013-approximate-bayesian-computation
hyperbolic metamaterial
li2015-hyperbolic-phonon-polaritons-boron-nitride
Molecular dynamics
brandani2024-bayesian-simulations-chromatin-condensation, brockherde2017-bypassing-kohn-sham-machine-learning, chiariello2016-polymer-physics-chromosome-organisation, mardt2018-vampnets-deep-learning-molecular-kinetics, wang2024-scaling-laws-lattice-distortions
moral distress
miller2023-self-deception-clinical-nursing
Parent-child attachment
ali2021-parent-child-attachment
principal component analysis
kibble2020-integrative-machine-learning-obesity-twins, lahti2014-tipping-elements-intestinal-ecosystem, takemoto2024-moral-machine-large-language-models, yim2025-evolutionary-theory-forensic-anthropology, yokoyama2020-seasonal-density-habitat-catchability
effector memory
martin2018-memory-cd8-t-cell-definition
transmission electron microscopy
kim2015-large-area-multilayer-hexagonal-boron-nitride, matyusuf2020-silver-nanoparticle-synthesis-optimization, teyssier2015-photonic-crystals-chameleon-colour-change
1,370 further terms carry two or more rival definitions but fewer than four attested uses. A coverage over one other use can only come out 0% or 100%, so it cannot fail and is not published — but the definitions themselves are the point, and they are all here. Each one is a different field's answer to the same word, with the paper that wrote it and the sentence that licensed it.
The most commonly used technique is known as the 12-lead ECG technique.
dzedzickis2020-human-emotion-recognition-review-of-sensors-and
not defined in this paper's own words; the standard twelve-lead electrocardiogram
ribeiro2020-ecg-deep-neural-network
The short-duration, standard, 12-lead ECG (S12L-ECG) is the most commonly used complementary exam for the evaluation of the heart, being employed across all clinical settings, from the primary care centers to the intensive care units.
not defined in this paper's own words; the other name in use for the same virus while the paper was written
wu2020-new-coronavirus-respiratory-disease-china
To investigate the possible aetiological agents associated with this disease, we collected bronchoalveolar lavage fluid (BALF) and performed deep meta-transcriptomic sequencing. The clinical specimen was handled in a biosafety level 3 laboratory at Shanghai Public Health Clinical Center. Total RNA was extracted from 200 μl of BALF and a meta-transcriptomic library was constructed for pair-end (150
not defined in this paper's own words; the provisional name, taken from the WHO, superseded by SARS-CoV-2 between acceptance and publication
zhou2020-a-pneumonia-outbreak-associated-wi
Following the name given by the World Health Organization (WHO), we tentatively call it novel coronavirus 2019 (2019-nCoV).
THE NAME THIS PAPER USES THROUGHOUT, AND IT WAS DEAD BEFORE PUBLICATION. `Following the name given by the WHO, we TENTATIVELY call it ...`, and then the note in proof: `the ICTV has designated the virus as SARS-CoV-2`. The record's own subject terms say SARS-CoV-2 while its text says 2019-nCoV
zhou2020-a-pneumonia-outbreak-associated-wi
Note added in proof: Since this paper was accepted, the ICTV has designated the virus as SARS-CoV-2 15 ; in addition, the WHO has released the official name of the disease caused by this virus, which is COVID-19
not defined in this paper's own words; PRISMA reporting checklist with twenty-seven items
moher2009-prisma
The PRISMA Statement consists of a 27-item checklist ( Table 1 ; see also Text S1 for a downloadable Word template for researchers to re-use) and a four-phase flow diagram ( Figure 1 ; see also Figure S1 for a downloadable Word template for researchers to re-use). The aim of the PRISMA Statement is to help authors improve the reporting of systematic reviews and meta-analyses. We have focused on ra
not defined in this paper's own words; core PRISMA reporting checklist
page2021-prisma-systematic-review-reporting-guideline
The Preferred Reporting Items for Systematic reviews and Meta-Analyses (PRISMA) statement, published in 2009, was designed to help systematic reviewers transparently report why the review was done, what the authors did, and what they found. Over the past decade, advances in systematic review methodology and terminology have necessitated an update to the guideline. The PRISMA 2020 statement replace
not defined in this paper's own words; enzymatic class assigned to RNase R
salzman2012-circular-rnas-are-the-predominant
We used susceptibility to RNaseR as a biochemical assay for the topology of the RNA molecules containing scrambled exons. RNaseR is a 3′ to 5′ exoribonuclease that degrades essentially all linear RNA molecules, regardless of structure, provided the RNA contains a 7 bp 3′ overhang [23] . To optimize the efficiency of RNaseR digestion, HeLa RNA was first depleted of ribosomal RNA and then subjected
not defined in this paper's own words; enzymatic class of RNase R
salzman2013-cell-type-specific-features-of-cir
Validation We used the enzyme RNase R, a highly processive 3′ to 5′ exoribonuclease, to test our computational predictions of circular RNA species. This exonuclease is not expected to digest circular RNA because they lack the required free 3′ end but readily digests linear RNAs with a 3′ single stranded region of greater than 7 nucleotides [10] . We tested a panel of 8 putative circular RNAs varyi
C5-methylcytosine
liu2019-deepmod-nanopore-dna-modifications
introduced by adding methyl group at the 5th position of the pyrimidine ring of cytosines
liu2019-deepmod-nanopore-dna-modifications
not defined in this paper's own words; primary auditory cortex, where the recovery happens
Kumar2023-cell-type-specific-plasticity-of-inhibitory
In vivo wide-field imaging We performed transcranial imaging to locate the primary auditory cortex (A1) and image sound-evoked activity from specific populations of A1 neurons in awake mice at P60–80.
The boundaries of the primary auditory cortex were functionally determined in a subset of animals of different ages with intracortical recordings as previously done (Bao et al., 2003 ; de Villers-Sidani et al., 2007 ) using the following criteria: (1) primary auditory neurons generally have a continuous, single-peaked, V-shaped receptive field, and (2) characteristic frequencies of the A1 neurons are tonotopically organized with high frequencies represented rostrally and low frequencies represented caudally.
Ouellet2014-trajectory-of-the-main-gabaergic-interneuron
ABR THRESHOLD AND GAIN REPRESENT THE COMBINED FUNCTIONALITY OF INNER HAIR CELLS (IHCs), OHCs, TYPE-I SGNs, AND SYNAPSES BETWEEN THE IHCs AND TYPE-I SGN DENDRITES CALLED RIBBON SYNAPSES
Kumar2023-cell-type-specific-plasticity-of-inhibitory
not defined in this paper's own words; auditory brainstem response; a COMBINED FUNCTIONALITY of hair cells, ganglion neurons and ribbon synapses
Kumar2023-cell-type-specific-plasticity-of-inhibitory
To assess the consequences of this noise exposure on peripheral structures, we measured and quantified the auditory brainstem response (ABR) before and 1, 3, and 10 days after noise exposure.
not defined in this paper's own words; a way the studies operationalised resilience, reported by the paper as criticised
hannon2022-perinatal-resilience-concept
Although this approach is common within resilience literature as a whole, operationalising resilience as the absence of psychopathology has been criticised [ 98 ]; as the absence of illness does not necessarily indicate the presence of health or successful adaptation, which is considered a hallmark of resilience [ 99 ]
not defined in this paper's own words; the thing resilience is repeatedly denied to be - the deficit-model reading
southwick2014-resilience-definitions-theory-and
We define resilience very simply as a stable trajectory of healthy functioning after a highly adverse event. Our work (e.g., Bonanno, 2004 ; Bonanno, Westphal, & Mancini, 2011 ) has typically focused on acute life events, what we call potentially traumatic events. Over the course of time, often for a number of years, we map out the trajectories of people's responses to those events (e.g., Bonanno,
not defined in this paper's own words; art without intended external representation
specker2022-expertise-culture-visual-art-appreciation
It is important to note that representational and abstract artworks are not restricted to the fine arts. Dance forms across many cultures also have both representational and abstract content, such as dance that involves movements, tropes, or symbols to depict certain social or cultural themes and characters (representational dance), and dance that is purely for an aesthetic but non-symbolic, non-r
not defined in this paper's own words; non-representational paintings used as stimuli to reduce mimetic confounds
social-reputation-influences-on-liking
The study used 48 images of abstract paintings made from about 1960 onward (see Fig 1 for an example; S1 Table in Supplementary Information includes a full list of all artworks). Abstract art was selected to minimize potential confounding issues (e.g., personal memories, associations) from mimetic content and, due to the general, well-documented lack of familiarity, interest, and even appreciation
forming general ideas by extracting similarities from experience, language, or other concepts
jefferies2024-multidisciplinary-semantic-glossary
Definition: The process of forming general ideas or concepts by extracting similarities and general tendencies from direct experience, language, or other concepts.
not defined in this paper's own words; extraction of higher-order commonalities
jefferies2024-multidisciplinary-semantic-glossary
Abstraction is similar to generalization (Colunga & Smith, 2003 ), with one difference being that abstraction refers to identifying essential features or properties to form a higher-level representation, whereas generalization refers to the process of transferring knowledge or skills from specific instances or exemplars to new contexts (Son et al., 2008 ). Abstraction should not be confused with a
not defined in this paper's own words; interface hiding optimized implementation details
lawrence2013-genomic-ranges-software
The primary argument for storing ranges in specialized, formal data structures is efficiency, in terms of both implementation and language. The notion of ranges can be made explicit in the application programming interface (API), permitting the expression of algorithms in a succinct and readable language that illustrates concepts instead of exposing implementation details. Another goal is interope
not defined in this paper's own words; one of the two names for the same tissue
Laubach2018-what-if-anything-is-rodent-prefrontal-cortex
These researchers often use variations of the term anterior cingulate cortex (ACC) to refer to agranular areas in the medial frontal cortex.
anthropogenic climate change
burrell2020-drylands-desertification-climate-change
not defined in this paper's own words; region implicated in control, error monitoring, and motivation
ng2018-growth-mindset-intrinsic-motivation
There is a small body of existing growth mindset studies using neuroscience methods. The study by Moser et al. [ 30 ] suggested that individuals with a growth mindset are receptive to corrective feedback, exhibiting a higher Pe (error positivity) waveform response, which is correlated with a heightened awareness of and attention to mistakes. Enhanced Pe amplitude was associated with enhanced atten
Access to care (O1) is defined as the system's capacity to provide care efficiently after a need is recognized, as well as costs associated with receiving care.
santana2017-how-to-practice-person-centred-care-a
not defined in this paper's own words; whether owners can obtain veterinary treatment for their animals
horecka2022-animal-sheltering-research
Access to care is an aspect of the One Health approach to considering animal welfare due to the zoonotic potential of various diseases that can find reservoir in companion animals ( 90 ).
not defined in this paper's own words; FAIR retrieval dimension
wilkinson2016-fair-guiding-principles-data-stewardship
This article describes four foundational principles—Findability, Accessibility, Interoperability, and Reusability—that serve to guide data producers and publishers as they navigate around these obstacles, thereby helping to maximize the added-value gained by contemporary, formal scholarly digital publishing. Importantly, it is our intent that the principles apply not only to ‘data’ in the conventi
the FAIR objective that identified digital objects can be retrieved under explicit access conditions
wilkinson2016-fair-guiding-principles-data-stewardship
We will consider the current approach to this problem from a variety of data discovery and integration perspectives. If the desired datasets existed, where might they have been published, and how would one begin to search for them, using what search tools? The desired search would need to filter based on specific species, specific tissues, specific types of data (Poly-A, microarray, NGS), specific
not defined in this paper's own words; GOC judgment of the automated annotations described
aleksander2023-the-gene-ontology-knowledgebase-in
While annotations using the Inferred from Electronic Annotation (IEA) evidence code are considered automated, most implement expert review of a subset of annotations to minimize false positives (for example, UniRule ( MacDougall et al. 2021 ) and InterPro2GO ( Paysan-Lafosse et al. 2022 )). The GOC considers these annotations to be accurate though they are often less specific than other annotation
not defined in this paper's own words; faithful reporting of conduct and findings
page2021-prisma-systematic-review-reporting-guideline
Systematic reviews serve many critical roles. They can provide syntheses of the state of knowledge in a field, from which future research priorities can be identified; they can address questions that otherwise could not be answered by individual studies; they can identify problems in primary research that should be rectified in future studies; and they can generate or evaluate theories about how o
not defined in this paper's own words
mooney2020-marine-acoustic-biodiversity-assessment
A chorus can mask the individual, often lower-level, transient sounds and thus will often reduce the detectability of many signals and the overall acoustic diversity.
the variety of sounds recorded at a site, which the review warns may not directly reflect the variety of life there
mooney2020-marine-acoustic-biodiversity-assessment
While soundscape metrics may be valuable, the variety and variability of life at a recording location may not be directly reflected by the variety and variability of acoustic signals
not defined in this paper's own words; nous poietikos, Aristotle active and craft-like intellectual capacity
stanciu2023-consciousness-4e-cognition-and-aristotle-a-f
However, the active intellect, as in On the Soul 3.4 (429a10) and 3.5 (430a25) and also in Metaphysics 1072b23ff, is separable from the body, impassive, unmixed, and divine in the manner Descartes' res cogitans also is while sense can never exist apart from the body. The relationship between the active and the passive intellect or the higher and active part ( to noêtikon ) and the lower, passive,
the active craft-like faculty that gives form, contrasted with passive receptivity
stanciu2023-consciousness-4e-cognition-and-aristotle-a-f
To exemplify the difference between intellect as it comes to be all things and intellect as an active craft ( poiêtikon ) imposing a specific form to the matter, Aristotle uses its comparison with light, which makes colors actually exist while without light they would just potentially exist. By that, while again highlighting the isomorphism and tight relationship between sensation and thinking, Ar
a rapid local optimisation scheme used to refine the network weights
sabir2021-singular-models
The optimization of the decision variables is performed initially through GNNs by using GA, and after adequate trials, the GA performance is considerably improved by using fine tuning with the suitable rapid local process by taking the global best GA values as a preliminary weight. Subsequently, an efficient ASA scheme is implemented for updating the parameters of the network. In recent decades, A
not defined in this paper's own words; the rapid local optimiser refining the weights
sabir2021-singular-models
The focus of the present study is to present a stochastic numerical computing framework based on Gudermannian neural networks (GNNs) together with the global and local search genetic algorithm (GA) and active-set approach (ASA), i.e., GNNs-GA-ASA. The designed computing framework GNNs-GA-ASA is tested for the higher order nonlinear singular differential model (HO-NSDM). Three different nonlinear s
not defined in this paper's own words; what is measured
Huang2016-persistent-neural-activity-in-auditory-corte
The WM-related activity in the core fields of AC, as measured in monkeys, was stimulus specific, i.e., it was observed only when a specific frequency of S1 (or specific stimulus-response associations of S2) had to be stored in WM.
the number of likes made by a user
bakshy2020-selective-exposure-facebook-news-diet
Fig 1 shows the average number of pages liked by users with respect to their activity and lifetime; the former is defined as the number of likes of the user, whilst the latter is defined as the time span between the first and the last like a user put on two different posts. In Fig 1(A) we observe the relationship between the users’ activity and the number of pages they interact with. We notice tha
Alzheimer's disease
cummings2015-agitation-cognitive-disorders-definition
Alzheimer’s disease
palmqvist2017-amyloid-default-mode-network
a birelational Kripke frame with a contradiction relation and a contrariety relation satisfying the diagram-motivated conditions
frijters-demey2023-modal-logic-aristotelian-diagrams
(AD-frame). An AD-frame is a tuple 𝐹 = 〈 𝑊 , 𝑅 𝐶 𝐷 , 𝑅 𝐶 〉 such that
not defined in this paper's own words; the birelational Kripke frame capturing an Aristotelian diagram
frijters-demey2023-modal-logic-aristotelian-diagrams
There are several complementary reasons for studying the modal logic of Aristotelian diagrams from the perspective of logical geometry as well as from that of modal logic itself. First of all, it nicely illustrates the expressive power of modal—and in particular, hybrid—languages to describe relational structures. Secondly, even though this is not the main concern of this paper, we will show how a
not defined in this paper's own words; capacity to add meanings, terms, and connections
wieczorek2012-darwin-core-evolving-community-biodiversity-data-standard
In combination with openness and consensus building (key aspects of the TDWG constitution: http://www.tdwg.org/about-tdwg/constitution/ ), two of the guiding principles behind Darwin Core are flexibility and adaptability. The standard has to be flexible to accommodate a variety of ever evolving technical contexts in which it might be used (spreadsheet columns, relational database fields, XML schem
the capacity of a system to absorb the disturbances while retaining those features which are part of its original identity
moya2022-social-resilience-definition
not defined in this paper's own words; what the long inter-stimulus interval guards against
Vinnik2012-auditory-stimuli-elicit-hippocampal-neuronal
The long inter-stimulus interval was intended to reduce the animal's adaptation to stimulus repetitions (Ulanovsky et al., 2004 ).
not defined in this paper's own words; tied by the studies to measures of functioning in the mothering role
hannon2022-perinatal-resilience-concept
However, conceptual boundaries between resilience and adaptation or adjustment were not always clear
a puzzling, slippery concept whose definitions shift with culture, politics and science
rise2019-addiction-moral-responsibility
Addiction as a phenomenon is a puzzle, paradox, and slippery concept for which definitions and classifications in diagnostic systems have changed with cultural, political, and scientific developments ( Berridge et al., 2014 ; Room et al., 2015 ).
not defined in this paper's own words; repeated action and gratification generated by interface feedback
williams2020-struggle-human-attention
The communication interfaces design systems of social media, which act as the likes/rewards conjunction, construct reinforcements for behavioral stimuli, meaning promotion, and guidance for the actions of individuals. This action–reaction mechanism promoted by the system of likes and the intensely interactive design of social media converts the attention given into action or behavior of the indivi
Additive manufacturing (AM) is the process of fabricating objects layer by layer from 3D numerical models, as opposed to traditional subtractive manufacturing technologies.
gorsse2017-additive-manufacturing-of-metals-a-brief-review
not defined in this paper's own words in this sentence
boldini2024-stigmergy-mathematical-modelling-control
such a process would be heavily context-dependent (for example, the dynamics of ants’ pheromone release [ 13 ] is different from that of robotic collective additive manufacturing (AM) [ 23 ]), thus hindering the generality of our theory.
not defined in this paper's own words; about 4% of a microplastic's weight, and the fraction that carries the hazard the polymer does not
smith2018-microplastics-in-seafood-and-the-i
Additives account for approximately 4% of the weight of microplastics
not defined in this paper's own words; chemicals intentionally added during production for colour, transparency and resistance - and in almost all cases NOT chemically bound to the polymer
campanale2020-a-detailed-review-study-on-potenti
Additives are chemicals intentionally added during plastic production to give plastic qualities like color and transparency and to enhance the performance of plastic products to improve both the resistance to degradation by ozone, temperature, light radiation, mold, bacteria and humidity, and mechanical, thermal and electrical resistance [ 18 ]. They include inert or reinforcing fillers, plasticiz
absorption, distribution, metabolism, and excretion
daina2017-swissadme-free-web-tool
During the time- and resource-consuming processes of drug discovery and development, a large number of molecular structures are evaluated according to very diverse parameters in order to steer the selection of which chemicals to synthetize, test and promote, with the final goal to identify those with the best chance to become an effective medicine for the patients. The molecules must show high bio
not defined in this paper's own words; absorption, distribution, metabolism and excretion properties
daina2017-swissadme-free-web-tool
To be effective as a drug, a potent molecule must reach its target in the body in sufficient concentration, and stay there in a bioactive form long enough for the expected biologic events to occur. Drug development involves assessment of absorption, distribution, metabolism and excretion (ADME) increasingly earlier in the discovery process, at a stage when considered compounds are numerous but acc
not defined in this paper's own words; a staff- and setting-level RE-AIM dimension
glasgow2019-re-aim-planning-evaluation-framework
The RE-AIM dimensions include reach (R), effectiveness (E), and maintenance (M)–which operate at the individual-level (i.e., those who are intended to benefit), and adoption (A), implementation (I), and maintenance (M), which focus on the staff and setting levels. Setting-level RE-AIM factors are often multi-level and address context and external validity issues important to population impact. For
not defined in this paper's own words; uptake of an evidence-based practice
lewis2018-classification-causality-implementation-mechanisms
In our case example, training is a strategy that is underspecified. We adapted procedures from Michie et al. ( 26 ) to guide strategy specification recommending that each strategy be assessed for whether it: (1) aims to promote the adoption, implementation, sustainment, or scale-up of an evidence-based practice; (2) is a proposed “active ingredient” of adoption, implementation, sustainment, or sca
not defined in this paper's own words; the amount of Levo-HCl the adsorbent takes up
tao2020-cellulose-nanocrystal-graphene-oxide-adsorption
The three-dimensional structure of the composite material rendered a high surface area and electrostatic attraction, resulting in increased adsorption capacity of the CNCs-GO for Levo-HCl.
the amount of pharmaceutical adsorbed by the GNPs
rosli2021-graphene-nanoplatelets-pharmaceutical-removal
not defined in this paper's own words; art-specific affect produced through appraisal and engagement
mastandrea2019-art-wellbeing-aesthetic-emotion
Given these considerations, it may be thought that the aesthetic emotion is distinctive of aesthetic appreciation, denoting an art-specific emotional response evolved from basic biologic emotions ( Leder et al., 2004 ).
not defined in this paper's own words; felt response connecting viewer and artwork
trondle2018-installation-art-aesthetic-experience
The primary means of assessment involved soliciting participant reports of their felt emotions using a list of terms meant to capture a range of aspects or outcomes. This followed previous work in appraisal theory (e.g., Silvia, 2005a ; Scherer et al., 2006 ) that suggests that specific emotions might be tied to the personal relationship between viewer and art and through mapping their general inc
not defined in this paper's own words; felt response to perceived aesthetic appeal
menninghaus2017-measuring-aesthetic-emotions
Aesthetic emotions are the emotions that can arise when a person perceives and evaluates a stimulus for its aesthetic appeal or virtues [ 23 ]. Beyond this basic definition, opinions on the precise characterization and range of aesthetic emotions diverge [ 2 , 5 , 13 , 24 – 33 ]. The existing literature does not offer a definition of aesthetic emotions based on a set of individually necessary and
not defined in this paper's own words; evaluation informed by and informing felt emotion
menninghaus2017-measuring-aesthetic-emotions
In sum, aesthetic emotions are aesthetically evaluative emotions [ 23 ] because they influence and are influenced by aesthetic judgment. The aesthetic evaluation of stimuli both informs and results from the experience and regulation of aesthetic emotions.
not defined in this paper's own words; evaluation of an artifact's aesthetic value
mastandrea2019-art-wellbeing-aesthetic-emotion
In line with the conceptual frameworks offered by music research, it may be hypothesized that pleasure in visual art reception relies upon (1) emotional contagion with the valence conveyed by the artwork; (2) appraising a negative emotional stimulus as a fictional rather than realistic; (3) regulating emotion accordingly; (4) enjoying aesthetic experience and performing aesthetic judgment.
not defined in this paper's own words; non-utilitarian pleasure in an object's intrinsic qualities
mastandrea2019-art-wellbeing-aesthetic-emotion
Such pleasure is not derived from the utilitarian properties of the objects but linked to the intrinsic qualities of the aesthetic objects themselves.
pleasure based on intrinsic rather than utilitarian object qualities
mastandrea2019-art-wellbeing-aesthetic-emotion
Hence, the aesthetic pleasure is disinterested ( Kant, 1790 ).
not defined in this paper's own words; sensory knowledge, beauty, or philosophy of art
conway2013-neuroaesthetics-trouble-beauty
Aesthetics has a complex history. The term derives from the Greek “perception” and was coined by Alexander Baumgarten in 1750 as the study of sensory knowledge. But following Immanuel Kant's Critique of Judgment in 1790 [2] , aesthetics began focusing on the concept of beauty, in nature and in art. During the nineteenth century, the term became largely synonymous with the philosophy of art. These
not defined in this paper's own words; the study of aesthetic entities, properties, judgments and change, here extended beyond humans
coevolutionary-aesthetics-in-human-and-biotic-artworlds
Given the ontological diversity of the human entities, artifacts, and performances that are generally considered as aesthetic, the fundamental goals of aesthetics are to establish accounts of the nature of aesthetic entities, aesthetic properties, aesthetic judgments, and the process of aesthetic change over time. Currently, the field of aesthetics has achieved little consensus on either a general
includes emotion recognition, emotional contagion, motor empathy, and shared pain
huron2020-enjoyment-sad-music
not defined in this paper's own words; resonating with the affect of others, the component that correlates with the ACCg pattern
Lockwood2022-distinct-neural-representations-for-prosocia
37 , 41 , 68 An important distinction is often made in the literature between “affective empathy,” resonating with the affect of others, and “cognitive empathy,” understanding the thoughts and affective states of others.
action possibilities latent in the environment
friston2012-dopamine-affordance-active-inference
not defined in this paper's own words; what a given application makes possible, which is why compensatory potential differs between applications
kardefeltwinther2014-critique-internet-addiction-research
These recent discussions take the idea of com- pensatory internet use to a more detailed level where applications are assumed to have different compensatory potential depending on their affordances.
Adaptive Forest Management
stupak2021-sustainability-governance-legitimacy-trust
atomic force microscopy
li2015-strain-textured-mos2-artificial-atoms, liu2014-polymer-solar-cells-aggregation
a computerized algorithm (i.e., agent)
oh2018-social-presence-systematic-review
an entity capable of being the source of action
cervantes2021-moral-zombies-algorithms-agents
An agent is, roughly, an entity that can be the source of action. Most accounts of moral agency in philosophy defend either some version of autonomy or some version of moral responsibility as constitutive of moral agency, or both. The relationship between these concepts is fraught with controversy. Some philosophers think that whenever there is one, the other follows, while others argue that auton
not defined in this paper's own words; authorized representative of a principal
bertolini2022-robots-ai-legal-subjects
Indeed, in a narrower sense, the term “agency” also refers to that institution, or rather set of norms, allowing and regulating the fiduciary relationship whereby a subject—the “agent”—is expressly or implicitly authorized to act on behalf of another subject—the “principal”—to create legal relations between the latter and third parties. Thus, an agent who acts within the scope of authority conferr
a class of computational models for simulating the actions and interactions of autonomous agents
koshiyama2024-algorithm-auditing-ai-risks
not defined in this paper's own words
abdurahman2024-llms-psychological-research
However, unlike traditional agent-based models, which define the environment, agents, interactions, and their consequences to allow for inferences based on these parameters, LLMs largely operate as black-boxes.
not defined in this paper's own words in this sentence
ge2021-agent-based-global-food-trade
Similarly, many agent-based models (ABMs) of trade and international relations also treat countries as encapsulated agents that interact with each other [ 22 , 35 , 36 ].
not defined in this paper's own words; hostile verbal or physical behaviour directed at others or oneself
cummings2015-agitation-cognitive-disorders-definition
While agitation may include aggressive behaviors, it is not identical to aggression, and agitation can occur without aggression (e.g. pacing, rocking, repetitious mannerisms).
not defined in this paper's own words; one of the three sets of reactions the coping system contains, alongside supplication and invention
a-functional-model-of-kitsch-and-art-linking
How do we accommodate needs for security and arousal when physical distance regulation is ruled out? Often we cannot simply walk away from a source of distress (or tedium) and when we feel miserable there is no guarantee that friends and relatives are available to comfort us. Should physical distance regulation be blocked by an obstacle, the auxiliary system of the Zurich Model comes into play. Th
not defined in this paper's own words; reported cross-package energy-component correspondence
eastman2017-openmm-rapid-development-high-performance
Results are shown for Amber in Tables 6 and 7 , for Gromacs in Tables 8 and 9 , and for CHARMM in Tables 10 and 11 . In all cases the agreement is excellent, with all energy components matching to at least four significant digits. In systems that use PME, the nonbonded energies have somewhat larger differences than other energy components. This is partly because of the larger magnitude of this int
not defined in this paper's own words; the proportion of subcommittee members endorsing a statement
cohen2019-the-society-for-immunotherapy-of-c
Literature was graded into three categories of evidence which were adapted from the National Comprehensive Cancer Network (NCCN) guidelines and required consensus among SITC Head and Neck Cancer Guidelines Subcommittee members. Consensus was defined as ≥75% agreement among subcommittee members.
Akaike information criterion
ray2015-climate-variation-crop-yield, shaw2024-tick-borne-pathogen-landscape-ecology
not defined in this paper's own words; information criterion balancing fit and parameter count
harrison2018-mixed-effects-modelling-ecology
Unlike NHST, which leads to a focus on a single best model, model selection using IT approaches allows the degree of support in the data for several competing models to be ranked using metrics such as AIC. Information criteria attempt to quantify the Kullback–Leibler distance (KLD), a measure of the relative amount of information lost when a given model approximates the true data-generating proces
not defined in this paper's own words in this sentence
shaw2024-tick-borne-pathogen-landscape-ecology
The best-fit models were selected based on the lowest Akaike information criterion (AIC) score of any combination of predictor variables.
not defined in this paper's own words; criterion selecting spline complexity
ainsworth2020-performance-characteristics-of-fiv
Whereas sample numbers were partly decided by the availability of samples required to address the study aims, the sample size was prospectively calculated to provide 80% power to detect a lower 95% CI of at least 96·0% if the actual assay sensitivity was 98·3% (which required ≥460 positive samples) and 80% power to detect a lower 95% CI of at least 96·0% if the actual assay specificity was 97·7% (
penalizes equations with more terms
ray2015-climate-variation-crop-yield
not defined in this paper's own words; prediction quality constrained across protected groups
cirillo2021-bias-big-data-ai-open-science
To increase algorithmic fairness, protected attributes, such as gender or ethnicity, can be included during training in order to ensure that algorithmic predictions are statistically independent from these attributes. 34 Alternatively, loss functions can be defined per protected group, and may be forced to remain below a certain level for all defined groups, so that no single group is systematical
not defined in this paper's own words; value-dependent criteria governing allocation across protected groups
chen2020-predictably-unequal-algorithmic-clinical-prediction
The impossibility of simultaneously satisfying the various fairness criteria points both to the inevitability of unfairness (defined by heterogeneous “common sense” outcomes-based measures) and to the limited validity, authority and usefulness of these measures. If we start from the premise that fair and unbiased decision-making is possible in theory, the impossibility results suggest that unequal
not defined in this paper's own words; critical mortality outcome prioritized by the group
bull2020-world-health-organization-physical-activity-sedentary-behaviour-guidelines
The GDG considered the proposed wording of the recommendations and rated the strength of the recommendations as strong or conditional ( table 2 ) based on the balance of benefits to harms, the certainty of evidence, sensitivity to values and preferences and the potential impact on gender, social and health equity, as well as acceptability, feasibility and resource implications. The assessment of t
not defined in this paper's own words; mortality summed across the independently projected cause groups
mathers2006-projections-global-mortality-burden-disease
Projected global deaths in 2030 ranged from 64.9 million under the optimistic scenario to 80.7 million under the pessimistic scenario, with a baseline projection of 73.2 million. Projected global deaths in 2030 under the UN medium variant projections were 1% higher, at 74.0 million [ 32 ]. Our global projections for all-cause mortality are remarkably close to the UN projections, given that our pro
not defined in this paper's own words; DeepMind AI system for protein-structure prediction
varadi2021-alphafold-protein-structure-database
AlphaFold is an AI system developed by DeepMind that makes state-of-the-art predictions of protein structures from their amino-acid sequences ( 9 ). CASP (Critical Assessment of Structure Predictions) is a biennial challenge for research groups to test the accuracy of their predictions against actual experimental data. In 2020, the organizers of the CASP14 benchmark recognized AlphaFold as a solut
not defined in this paper's own words; neural-network protein-structure prediction system
jumper2021-highly-accurate-protein-structure-prediction-alphafold
Proteins are essential to life, and understanding their structure can facilitate a mechanistic understanding of their function. Through an enormous experimental effort 1 – 4 , the structures of around 100,000 unique proteins have been determined 5 , but this represents a small fraction of the billions of known protein sequences 6 , 7 . Structural coverage is bottlenecked by the months to years of
not defined in this paper's own words; the AF2 variant for protein complexes, teacher and baseline
abramson2024-alphafold3
While expanding in modelling abilities, AF3 has also improved in protein complex accuracy relative to AlphaFold-Multimer (v.2.3) 7 , 8 . Generally, protein–protein prediction success (DockQ > 0.23) 40 has increased (paired Wilcoxon signed-rank test, P = 1.8 × 10 −18 ), with antibody–protein interaction prediction in particular showing a marked improvement (Fig. 1c (right); paired Wilcoxon signed-r
not defined in this paper's own words; the refined AlphaFold2 variant for protein complexes
mirdita2022-colabfold
Predicting the three-dimensional (3D) structure of a protein from its sequence alone remains an unsolved problem. However, by exploiting the information in multiple sequence alignments (MSAs) of related proteins as the raw input features for end-to-end training, AlphaFold2 (ref. 1 ) was able to predict the 3D atomic coordinates of folded protein structures at a median global distance test total sc
Alternative parents are categories that describe the compound but do not have an ancestor–descendant relationship with each other or with the Direct Parent.
djoumbou-feunang2016-classyfire-automated-chemical-clas
not defined in this paper's own words; further categories that also describe the compound, displayed because `most descriptive` varies by user and context
djoumbou-feunang2016-classyfire-automated-chemical-clas
However, the notion of what is most descriptive can vary from one user to another, and from one context to another. For example, a cyclic depsipeptide could be also be classified as a lactam. Because of this ambiguity, ClassyFire also displays a list of Alternative Parents
a key phenomenon contributing to the production of different mature transcripts from the same primary RNA sequence
sammeth2008-alternative-splicing-nomenclature
not defined in this paper's own words; production of multiple splice isoform proteins from multi-exon genes
bateman2020-uniprot-the-universal-protein-know
To further ensure our data is both human-readable and also computationally-tractable and continues to adhere to the FAIR principles ( 2 ), we are working to standardize the representation of all existing UniProt data on the functional impact of human variation. UniProtKB/Swiss-Prot has curated over 81 000 variants in 13,000 human protein sequence records from peer-reviewed literature, annotated wi
not defined in this paper's own words; the conventional isoform-generating mechanism that back-splicing is offered as an alternate to
legnini2017-circ-znf609-is-a-circular-rna-that
Generation of protein isoforms via back-splicing and circularization of selected exons from primary mRNA transcripts is an intriguing mechanistic alternate to conventional alternative splicing.
not defined in this paper's own words; second disease focus used for targeted curation
bateman2020-uniprot-the-universal-protein-know
Responding to the COVID-19 pandemic The broad expert knowledge of our curation team enables us to quickly respond to areas of new and rapidly expanding biology. Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) was identified as the cause of the 2019–2020 COVID-19 viral outbreak and ensuing pandemic. Its genome sequence was first made publicly available by the International Nucleotide S
not defined in this paper's own words; the most common neurodegenerative cause of dementia
cummings2015-agitation-cognitive-disorders-definition
It is a frequent manifestation of Alzheimer's disease (AD), frontotemporal dementia (FTD), dementia with Lewy bodies (DLB), and other dementia syndromes (Ballard and Corbett, 2010 ; Manoochehri and Huey, 2012 ; Bruns and Josephs, 2013 ).
not defined in this paper's own words; force field used for post-prediction relaxation
jumper2021-highly-accurate-protein-structure-prediction-alphafold
End-to-end structure prediction The structure module (Fig. 3d ) operates on a concrete 3D backbone structure using the pair representation and the original sequence row (single representation) of the MSA representation from the trunk. The 3D backbone structure is represented as N res independent rotations and translations, each with respect to the global frame (residue gas) (Fig. 3e ). These rotat
not defined in this paper's own words; molecular-dynamics package whose formats OpenMM reads
eastman2017-openmm-rapid-development-high-performance
Another unique feature of OpenMM is its support for multiple input pipelines. Before a molecular system can be simulated, it first must be modelled. This is sometimes a complex process involving such steps as combining multiple molecules into a single file, building missing loops, selecting a force field, and parametrizing small molecules. Typically, each simulation package provides its own tools
`ASV methods infer the biological sequences in the sample prior to the introduction of amplification and sequencing errors, and distinguish sequence variants differing by as little as one nucleotide`
callahan2017-exact-sequence-variants-should-rep
ASVs
a biological sequence inferred prior to amplification and sequencing error, distinguished to a single nucleotide
callahan2017-exact-sequence-variants-should-rep
ASV methods infer the biological sequences in the sample prior to the introduction of amplification and sequencing errors, and distinguish sequence variants differing by as little as one nucleotide.
a phenomenon of microbial organisms becoming less susceptible to the antimicrobial medicines used to eliminate or control them
chandler2019-antimicrobial-resistance-infrastructure
a term with no easy common definition, as numerous as drug-bug combinations
chandler2019-antimicrobial-resistance-infrastructure
The above description demonstrates the multiplicity of AMR (Mol, 2002 ); definitions of AMR could be as numerous as drug-bug combinations exist, articulated in clinical, microbiological and molecular registers.
causal reasoning under a clear framework, set against description
wang2021-china-analytical-concept
Specifically, analysis is logical deduction and reasoning under clear and definite conceptual frameworks and focuses on causality, while description means depicting and narrating only according to some external clues (such as structure or context).
not defined in this paper's own words; dataset-lifecycle component covering computation that derives usable information
stephens2015-genomical
To compare these four disparate domains, we considered the four components that comprise the “life cycle” of a dataset: acquisition, storage, distribution, and analysis
dysbiotic individuals vary more in microbial community composition than healthy individuals
brussow2020-gut-dysbiosis-concept
not defined in this paper's own words; claim that dysbiotic individuals vary more than healthy individuals
berg2020-microbiome-definition-re-visited-o
The division of microorganisms into beneficial, pathogenic, and neutral based on microbial interactions with their hosts is a part of the widely cited microbiome definition by Lederberg and McCray [ 42 ]. According to their interpretation, antagonistic coevolution includes host-parasite interactions, while mutualistic coevolution is present when positive interactions prevail (Fig. 6 ). Such positi
the difference in the natural log of start and end values divided by the number of years
ferrari2024-global-burden-371-diseases
GBD 2021 metrics were estimated as counts, all-age and age-specific rates per 100 000 population, and age-standardised rates per 100 000 population, calculated using the GBD standard population structure. We present percentage changes over specified time periods (eg, 2010–21), and annualised rates of change as the difference in the natural log of the values at the start and end of the time interva
the difference in the natural log of the values at the start and end of an interval, divided by the number of years
vos2020-global-burden-369-diseases
The Socio-demographic Index (SDI) is a composite indicator of a country's lag-distributed income per capita, average years of schooling, and the fertility rate in females under the age of 25 years ( appendix 1 section 6 ). 13 For changes over time, we present annualised rates of change as the difference in the natural log of the values at the start and end of the time interval divided by the numbe
not defined in this paper's own words; a cumulative effect less than the additive sum, and the label the same interaction carries from the other stressor's point of view
piggott2015-reconceptualizing-synergism-and-an
While the identification of a synergism or antagonism is generally straightforward when both stressors operate in the same direction (i.e., double positive or double negative; Folt et al. 1999 ; Dunne 2010 ), for opposing individual effects, the definition of synergism seems paradoxical because what is synergistic to one stressor's effect direction is antagonistic to the other stressor's effect di
not defined in this paper's own words; negative microbial interaction
berg2020-microbiome-definition-re-visited-o
Microbes interact with one another, and these symbiotic interactions have diverse consequences for microbial fitness, population dynamics, and functional capacities within the microbiome [ 62 ]. These interactions can either be between microorganisms of the same species or between different species, genera, families, and domains of life. The interactive patterns within these webs may be positive (
not defined in this paper's own words
gjini2023-invasion-resistance-multispecies-communities
Even when acting in the same way on system members, increasing their clearance rate or reducing proliferation, more antibiotics in our mechanistic model can drive the system from coexistence to competitive exclusion
not defined in this paper's own words; drugs that kill or inhibit bacteria
zhao2023-bacterial-biofilms-definition
The EPS matrix reduces the effect of antibiotics by neutralizing antimicrobial agents or limiting diffusion using extracellular polysaccharides.
average precision
liu2019-deepmod-nanopore-dna-modifications
weighted mean of precisions achieved at each threshold of predicted methylation percentage
liu2019-deepmod-nanopore-dna-modifications
application programming interface
takemoto2024-moral-machine-large-language-models
not defined in this paper's own words; abbreviation for application programming interface
harris2020-array-programming-numpy
Array programming provides a powerful, compact and expressive syntax for accessing, manipulating and operating on data in vectors, matrices and higher-dimensional arrays. NumPy is the primary array programming library for the Python language. It has an essential role in research analysis pipelines in fields as diverse as physics, chemistry, astronomy, geoscience, biology, psychology, materials sci
not defined in this paper's own words; short name for the application programming interface
varadi2021-alphafold-protein-structure-database
AlphaFold DB provides predictions through several data-access mechanisms: (i) bulk downloads via FTP; (ii) programmatic access via an application programming interface (API); (iii) download and interactive visualization of individual predictions on protein-specific web pages keyed on UniProt accessions
not defined in this paper's own words; one of the three EV types distinguished by release mechanism and size, released directly from the plasma membrane of dying cells
hessvik2017-current-knowledge-on-exosome-bioge
Three main types of EVs have been described based on their mechanism of release and size: exosomes (less than 150 nm in diameter), microvesicles/shedding particles and apoptotic bodies (both considered to be larger than 100 nm).
not defined in this paper's own words; the third EV subtype, separated from the others on the same unobservable basis
doyle2019-overview-of-extracellular-vesicles
Extracellular vesicles (EVs) are lipid bound vesicles secreted by cells into the extracellular space \ [1, 2\]. The three main subtypes of EVs are microvesicles (MVs), exosomes, and apoptotic bodies, which are differentiated based upon their biogenesis, release pathways, size, content, and function
not defined in this paper's own words; programmatic SLEAP interfaces
pereira2022-sleap-multi-animal-pose-tracking
Once trained, SLEAP models can be used to predict poses from previously unseen data (Fig. 1f ). We implemented efficient approach-specific algorithms in graphics processing unit (GPU)-accelerated code, which is automatically added based on the model configuration. This enables high-performance inference either through a command-line interface (CLI) or through low-level or high-level application pr
not defined in this paper's own words; programmatic mechanism for accessing UniProt data
bateman2020-uniprot-the-universal-protein-know
INTRODUCTION The UniProt databases exist to support biological and biomedical research by providing a complete compendium of all known protein sequence data linked to a summary of the experimentally verified, or computationally predicted, functional information about that protein. The UniProt Knowledgebase (UniProtKB) combines reviewed UniProtKB/Swiss-Prot entries, to which data have been added by
not defined in this paper's own words; bipolar evaluation of hedonic value and dynamism
trondle2018-installation-art-aesthetic-experience
Participants then rated the artwork using a series of nine bipolar scales (7-point scale, e.g., 1 = “extremely ugly” – 7 = “extremely beautiful,” all items listed in Figure 2 ). The items, based on the semantic differential technique ( Osgood et al., 1957 ), were selected from a previous museum study ( Pelowski, 2015 ) and combined both hedonic assessments (e.g., liking, pleasing, beauty) as well
of the quality of the relationship and interaction refers to perceptions and interpretations
vernooij-dassen2022-social-health-framework
a class of computational methods rooted in Bayesian statistics
sunnaker2013-approximate-bayesian-computation
a likelihood-free inference method based on simulating datasets and comparing their summary statistics
sheehan2016-deep-learning-population-genetic-inference
a measurement of the diagnostic ability of the SAS-SV score
kwon2013-smartphone-addiction-scale
not defined in this paper's own words; the area under a receiver operating characteristic curve, a measure of how well a score separates two groups
nonaka2023-hikikomori-definition-outing-frequency
The Area Under the Curve (AUC) was 0.874 between the hikikomori and control groups and 0.797 between the hikikomori and recovered groups.
not defined in this paper's own words; a summary of how well a biomarker separates cases from controls
unal2017-roc-optimal-cut-point
To measure the diagnostic ability of a biomarker, it is common to use summary measures such as the area under the ROC curve (AUC) and/or the partial area under the ROC curve (pAUC) [ 1 ].
not defined in this paper's own words; the ROC summary statistic
litjens2016-deep-learning-histopathology
The average bootstrapped area under the ROC curve (AUC) for the median analysis was 0.99 (0.95–1.0) and 0.98 (0.94–0.99) for the 90 th -percentile analysis.
the ratio between potential evapotranspiration (water demand) and precipitation (water supply)
tabari2020-climate-flood-extreme-precipitation
the ratio of precipitation to potential evapotranspiration
hu2021-aridity-biodiversity-soil-multifunctionality
a vertex- and edge-labeled graph whose vertices are formulas and whose edges are the Aristotelian relations holding between them relative to a logical system
frijters-demey2023-modal-logic-aristotelian-diagrams
(Aristotelian diagram). Let 𝑆 be a logical system, as shown in Definition 1, and let 𝐹 ⊆ 𝐿 𝑆 be a non-empty fragment of formulas. An Aristotelian diagram for ( 𝐹 , 𝑆 ) is a vertex- and edge-labeled graph: its vertices are labeled by the formulas from 𝐹 , while its edges are labeled by the Aristotelian relations holding between those formulas (relative to 𝑆 ). Furthermore, the fragment 𝐹 is require
not defined in this paper's own words; a graph of formulas linked by the Aristotelian relations
frijters-demey2023-modal-logic-aristotelian-diagrams
The interaction between modal logic and Aristotelian diagrams has a rich and well-documented history. The oldest kind of Aristotelian diagram is the square of opposition for syllogistics, which dates back to the second century CE [1]. However, from the twelfth century onwards, philosophers started to make use of these diagrams to explicate their theorizing on modalities as well [2,3,4,5]. Furtherm
a bijection between two diagrams' formulas that preserves every Aristotelian relation
frijters-demey2023-modal-logic-aristotelian-diagrams
(Aristotelian isomorphism). Consider Aristotelian diagrams D for ( 𝐹 , 𝑆 ) and 𝐷 ′ for ( 𝐹 ′ , 𝑆 ′ ) . An Aristotelian isomorphism from D to 𝐷 ′ is a bijection 𝑓 : 𝐹 → 𝐹 ′ such that, for all 𝛼 , 𝛽 ∈ 𝐹 and all Aristotelian relations 𝑅 𝑆 ∈ { CD 𝑆 , 𝐶 𝑆 , SC 𝑆 , SA 𝑆 } , it holds that 𝑅 𝑆 ( 𝛼 , 𝛽 ) iff 𝑅 𝑆 ′ ( 𝑓 ( 𝛼 ) , 𝑓 ( 𝛽 ) ) .
not defined in this paper's own words; relation-preserving bijection between diagrams
frijters-demey2023-modal-logic-aristotelian-diagrams
The notion of Aristotelian isomorphism, which was first introduced in [24,28], is of crucial importance in logical geometry, because it allows us to start studying Aristotelian diagrams as objects of independent interest. More concretely, Aristotelian isomorphisms enable us to make abstraction of the specific formulas and logical system that define a given Aristotelian diagram, and thus, to say th
learning by creating, responding to, or performing art rather than studying art theoretically
mastandrea2019-art-wellbeing-aesthetic-emotion
In learning through art, the learner approaches a subject matter by creating art, responding to art, or performing artistic works not by studying art as a theoretical discipline ( Rieger and Chernomas, 2013 ).
not defined in this paper's own words; learning through artistic creation, response, or performance
mastandrea2019-art-wellbeing-aesthetic-emotion
This art-based learning (ABL) has been used successfully in healthcare education ( Wikström, 2003 ; Rieger et al., 2016 ).
not defined in this paper's own words; alternative source of scrambled reads challenged by assays
salzman2012-circular-rnas-are-the-predominant
For more than 30 years, sporadic reports have described the presence of circular mRNA transcripts in mammals. Many of these circular RNAs were discovered serendipitously, and were largely disregarded as nonspecific byproducts when they were found to be expressed at low levels. In contrast to this prevailing view on the abundance of circular RNA isoforms, we found strong evidence that circular isof
not defined in this paper's own words; proposed source of rare opposite-polarity reads
salzman2013-cell-type-specific-features-of-cir
No evidence of RNA transcription from circular RNA templates Because the ENCODE libraries were constructed to preserve strand directionality, we could analyze the data for evidence that circular RNAs may serve as an RNA-dependent RNA polymerase as has been shown to occur in some siRNA pathways [11] and in viral or viroid replication [12] . Among paired end reads that support either sense or antise
not defined in this paper's own words; the entity credited with authorship of an artwork; the essay asks whether a computer could be one
can-computers-create-art
In short, in our present understanding, all art algorithms, including methods based on machine learning, are tools for artists; they are not themselves artists.
not defined in this paper's own words; the status attributed to the intentional creator of an artwork
the-folk-concept-of-art
Our first experiment explores the extent to which the three most common factors in definitions of art– intentional, aesthetic, and institutional– are consistent with the folk concept of art. We thus manipulated all three features in a between-subjects design, i.e. (i) whether or not the object was created intentionally, (ii) whether or not it is beautiful,Footnote 6 and (iii) whether or not it rec
human sense versus computer/suitcase sense: the term could come to mean something different for algorithms than for humans
can-computers-create-art
Suitcase words. The term “artist” could come to be used as having multiple meanings, just as words like “intelligence” and ”learning” have come to mean something different for humans than they do for algorithms (Brooks 2017). A software program that, say, automatically stylizes your photos, could be called an “artist” in the same way that software applications like “calendar” and “mail” programs h
not defined in this paper's own words; an object falling under the concept of art
the-folk-concept-of-art
The requirement for intentionality is so common in the literature that almost all definitions of art require an artwork to be the product of an intentional action. For instance, Christy Mag Uidhir claims that this position is almost universally accepted in the literature. He argues that any artwork must be the product of a successful attempt to make art (Uidhir, 2013). Moreover, the requirement of
not defined in this paper's own words; an object with an artistic identity conferred in the context of use
artefacts-essentialism-and-the-identification
The conditions of artefactuality as laid out here have some ramifications for the metaphysical study of artefacts, artworks and technologies. First, the distinction between the contexts of creation and use required for the definition of artefacts implies that artefacts cannot define or represent artworks or technologies. As Danto (1964, 1981) has noted, two seemingly identical objects might be cla
aerobic scope
sandblom2016-fish-climate-warming-physiological-constraints
alternative splicing
sammeth2008-alternative-splicing-nomenclature
automatic segmentation
clark2020-fetal-face-automatic-segmentation
every contig is compared against the entire non-redundant nucleotide and protein databases, with e values of 1e-10 and 1e-5, before any agent is called
wu2020-new-coronavirus-respiratory-disease-china
Sequencing reads were first adaptor and quality trimmed using the Trimmomatic program 32 . The remaining 56,565,928 reads were assembled de novo using both Megahit (v.1.1.3) 9 and Trinity (v.2.5.1) 33 with default parameter settings. Megahit generated a total of 384,096 assembled contigs (size range of 200–30,474 nt), whereas Trinity generated 1,329,960 contigs with a size range of 201–11,760 nt.
not defined in this paper's own words; assembled nucleotide inputs for ORF prediction
cantalapiedra2021-eggnog-mapper-v2-functional-annotation
Workflow and new features of eggNOG-mapper v2. ( A ) The gene prediction stage uses Prodigal to perform protein prediction from assembled contigs. ( B ) During the search stage, HMMER3, Diamond, or MMseqs2 can be used to align the input proteins to eggNOG v5. ( C ) During the orthology inference stage, a report of orthologs is generated based on the desired taxonomic scope. ( D ) Finally, protein
not defined in this paper's own words; a star-shaped macroglial cell, the name Lenhossek introduced
kettenmann2025-neuroglia-concept-1900
While the term astrocyte was coined by Lenhossek in his publication, the distinction between the three major classes of central nervous system glial cells—namely, astrocytes, oligodendrocytes, and microglia—was not yet made.
not defined in this paper's own words; the glial class that turned out to carry regional identity, split at a developmental boundary
zeisel2018-molecular-architecture-of-the-mous
Thus, we have uncovered a diversity of astrocyte and ependymal cell types, showing the hallmarks of developmentally specified identities and regional specialization.
a bank of already segmented ground-truth images the algorithm draws on to segment a new image
clark2020-fetal-face-automatic-segmentation
Multi-atlas propagation segmentation uses a set of already segmented ‘ground-truth’ guide images (i.e. ‘atlas’), as a reference bank for an algorithm tasked with building the segmentation of a new, unseen image.
not defined in this paper's own words; a published reference parcellation; two of them place the same demarcation ORTHOGONAL to each other
Wong2019-tonotopic-and-non-auditory-organization-of-t
The minimum frequency line aligns with the demarcation from the Allen Reference Atlas, while that by Paxinos and Franklin lays in the orthogonal direction.
not defined in this paper's own words; a surface imaging method
liu2014-polymer-solar-cells-aggregation
In addition, resonant soft X-ray scattering 14 15 25 28 29 30 (R-SoXS; Fig. 2c ) and atomic force microscopy (AFM; Supplementary Fig. 3 ) analysis reveals that the various PffBT4T-2OD:fullerene films all exhibit multi-length scale morphologies with reasonably small median domain sizes of ~30–40 nm, which is similar to previous cases of high-performance polymers 16 25 .
not defined in this paper's own words; the probe technique used to verify the deformation of the MoS 2 sheet
li2015-strain-textured-mos2-artificial-atoms
The clearly visible wrinkles between nanocones ( Fig. 1c ) indicate the presence of deformation and strain in the MoS 2 sheet, which is also verified by atomic force microscopy (AFM; Fig. 1d ).
not defined in this paper's own words; molecular entities represented as graph nodes
reiser2022-graph-neural-networks-materials-chemistry
The molecular structure is represented by an undirected graph, where nodes correspond to atoms and edges correspond to chemical bonds.
not defined in this paper's own words; molecular graph nodes
jiang2021-graph-neural-networks-molecular-representation
Molecular property modelling, which assists in hunting for chemicals with desired pharmacological and ADME/T (absorption, distribution, metabolism, excretion, and toxicity) properties, is one of the most classical cheminformatics tasks [ 1 , 2 ]. A variety of machine learning (ML) approaches, such as Naive Bayes (NB) [ 3 – 5 ], k-Nearest Neighbors (k-NN) [ 6 ], logistic regression (LR) [ 7 , 8 ],
not defined in this paper's own words; distribution of focus inferred from pronoun use
su2020-covid-lockdown-weibo-twitter-psycholinguistic
Existing studies have widely used the Language Inquiry and Word Count (LIWC) and confirmed it as a valid tool for psychometric analysis [ 22 ]. The LIWC dictionary has multiple versions of different languages, including English [ 23 ], French [ 24 ], Italian [ 25 ], and Dutch [ 26 ]. The LIWC dictionary includes many word categories of linguistic features that are related to mental processes and h
not defined in this paper's own words; how much attention is directed to a given target
bowshermurray2022-interpersonal-synchrony-autism
One possibility is that the motivation to seek connection with a partner influences social orienting, such that the increased desire to connect with a partner increases attentional allocation to them ( Lumsden et al., 2012 ; Gvirts and Perlmutter, 2020 ).
grinding macro- and microscale materials to generate particles of nanosized range
lou-franco2020-gold-nanozymes-concept
not defined in this paper's own words; loss of recipients at successive action steps
adams2016-population-interventions-agency
There is some evidence that high-agency population interventions are less effective, overall, than those that require less agency [ 7 , 11 , 12 ]. By reducing the need for individual decisions, there is less room in low-agency interventions for attrition at each of the many steps from intervention delivery to health outcome. For example, for an information leaflet encouraging women trying to conce
consists of others, as well as the self, who observe the performance and react to it
morgenroth2021-gender-trouble-binary
the self is part of the audience, so there is no unobserved back stage
morgenroth2021-gender-trouble-binary
We propose that there is no back stage where the performance of gender/sex is unobserved. Even in the absence of others, the self—with its ingrained binary views of gender/sex and internalized gender norms—is always watching and informs the performance of gender/sex
not defined in this paper's own words; a discrete strategy whose components are still being researched
powell2015-refined-compilation-implementation-strategies-eric
We note that while our attempt was to identify discrete strategies involving one action or process, the included strategies vary in their level of complexity. In fact, active research agendas have focused on determining the essential components of many of these “discrete” implementation strategies, such as audit and feedback [ 44 ], learning collaboratives [ 45 ], and supervision [ 46 ]. The evide
not defined in this paper's own words; implementation strategy using performance review and feedback
lewis2018-classification-causality-implementation-mechanisms
Our perspective draws upon Agile Science ( 13 , 14 )—a new method for developing and studying behavioral interventions that focuses on intervention modularity, causal modeling, and efficient evaluations to generate empirical evidence with clear boundary conditions (in terms of population, context, behavior, etc.) to maximize knowledge accumulation and repurposing. Agile Science has been used to in
not defined in this paper's own words; the target, and the stated exception
Kohl2022-neural-mechanisms-underlying-human-auditory
It is important to note that the connectivity within the auditory cortex is not as well understood as in other sensory regions, and that focusing solely on similarities between cortical regions is likely an oversimplified description of auditory cortical activation. There are known differences between auditory cortex and other sensory regions, as for example, laminar differences are less prominent
not defined in this paper's own words; the site, and the paper's claim is a DIRECT role rather than a correlate - established by switching it off during the priming window
Sollini2016-comodulation-enhances-signal-detection-via-p
Transient opsin-mediated silencing of auditory cortex during the priming period almost completely abolished these improvements, suggesting that cortical processing may play a direct and significant role in detection of quiet sounds in noisy environments
not defined in this paper's own words; the source of the feedback, and separately a place where inhibition is manipulated
Blackwell2020-auditory-cortex-shapes-sound-responses-in-th
Title, "Role of feedback from auditory cortex in shaping responses to sounds in inferior colliculus" Title.
adherence to in-group authority and conventions with aggression toward deviance
rollwage2018-metacognitive-failure-radical-beliefs
These questionnaires were selected based on prior models of political radicalism as stemming from a combination of intolerance to others’ viewpoints, dogmatic and rigid beliefs, and authoritarianism, which represents adherence to in-group authorities and conventions, and aggression in relation to deviance from these norms [ 23 , 24 , 25 ].
not defined in this paper's own words; obedience to authorities and conventions with aggression toward deviation
rollwage2018-metacognitive-failure-radical-beliefs
A factor analysis of individual items identified three latent factors ( Figure 1 A; see STAR Methods for detailed information about the factor loadings and their interpretation), which we labeled “political orientation” (loading on leftward versus rightward political views), “dogmatic intolerance” (loading on questions related to intolerance to opposing political beliefs and rigidity of belief sys
extra spacing added around the ligand-derived Cartesian binding box
mcnutt2021-gnina-molecular-docking-deep-learning
Open Babel [ 42 , 43 ], a chemical toolbox allowing the reading and writing of over 100 chemical file formats, is used for parsing the inputs, allowing commonly used structural data formats (e.g. PDB, sdf, mol, etc.) as well as gzipped versions of such files to be used. The binding site can be specified as a Cartesian box or by providing a ligand file (autobox_ligand). When autobox_ligand is used
not defined in this paper's own words; binding-box expansion
mcnutt2021-gnina-molecular-docking-deep-learning
We next evaluate the size of the targeted binding site (box). The autobox_add parameter increases the search space for the docking program to be larger than the rectangular prism defined by the autobox_ligand input to Gnina . In redocking (Additional file 1 : Figure S7a), the expansion of the search space decreases performance as the expanded search space increases the potential conformational spa
the digital representation of the player character (i.e., teachers and learners)
zhang2022-metaverse-in-education-definition
the virtual human is controlled by an actual human (i.e., avatar)
oh2018-social-presence-systematic-review
not defined in this paper's own words; DNA-homology criterion recommended for prokaryotic species
berg2020-microbiome-definition-re-visited-o
There is also a question of at what resolution each of the microbiome members should be studied. For eukaryotes, in most cases, the “reproductive unit” is an adequate level, where dynamics of organisms are measured [ 57 , 58 ], though the species definition continues to be debated [ 59 ]. For prokaryotes, however, such a definition based on reproduction does not exist: current species definitions
not defined in this paper's own words; a genome relatedness index comparing two whole genomes
barco2020-genus-definition-bacteria-archaea
Subsequently, as genome sequencing has become common, whole-genome comparisons became possible, leading to the advent of genome relatedness indices such as average nucleotide identity (ANI) ( 11 ), amino acid identity (AAI) ( 12 ), and digital DDH ( 13 ).
combine a collection of soil functions into a single index that quantifies the average level of multiple soil functions
hu2021-aridity-biodiversity-soil-multifunctionality
not defined in this paper's own words; multifunctionality as the mean of standardized functions
lefcheck2015-biodiversity-ecosystem-multifunctionality
However, given the shortcomings outlined above 23 , we are reticent to rely on inferences from the averaging approach and instead emphasize the more nuanced inferences from the threshold approach.
Awareness is, however, a matter of degree and varies along a spectrum
hollands2016-non-conscious-health-behaviour
Within the context of interventions or manipulations to change behaviour, the typical approach to operationalising the assessment of awareness of behaviour activation is to ask individuals directly. We regard self-report suggesting that an individual is unaware of the causal link between intervention stimuli and subsequent behaviour as a minimum necessary requirement for demonstrating that an inte
It should also be noted that the term “perceptual awareness” (often abbreviated as “awareness”) will be used here to describe situations in which perceptual content is reportable, although actual reporting may not take place, e.g., because the subject has been instructed to only report awareness of certain types of stimuli. This reportability requirement is commonly used to operationally define conscious perception but differs from certain theoretical frameworks that consider some types of perceptual processing as “phenomenally conscious” even if the subject is unable to report anything about these percepts when specifically instructed to do so (Lamme, 2006 ; Vandenbroucke et al., 2014 ). It also differs from notions of phenomenal consciousness in which perceptual content is accessible, yet not necessarily accessed (Block, 2007 , 2011 ). In both cases, we consider such processing as “pre-conscious” rather than a special type of unreportable consciousness, and our main goal is to isolate neural correlates of “access consciousness” from correlates of pre-conscious and post-perceptual processing
Pitts2014-isolating-neural-correlates-of-conscious-per
not defined in this paper's own words; awareness of oneself and environment as a component of consciousness
gervais2023-a-scoping-review-for-building-a-criticality
Though scientists and philosophers have not established a single definition of consciousness, it is generally agreed that conscious beings are aware of themselves, their surroundings, and their own perception. As such, consciousness is thought to require the dual capacity for wakefulness (arousal) and awareness of oneself and the environment ( Blume et al., 2015 ). In healthy individuals, wakefuln
humoral immune cells of the adaptive immune system
zhang2020-cancer-immunotherapy-tumor-infiltrating-immune-cells
B cells are humoral immune cells that function in the humoral immunity of the adaptive immune system. In response to infected cells or tumor cells, B cells differentiate into memory B cells or plasma cells, the latter of which can secrete immunoglobulins (Igs), also known as antibodies, to bind and neutralize target antigens. 120 Notably, the activation of B cells involves the interaction of antig
not defined in this paper's own words; humoral and antigen-presenting lymphocytes
zhang2020-cancer-immunotherapy-tumor-infiltrating-immune-cells
Cancer is a disease of the genome, and it is characterized by a genomic instability in which numerous point mutations accumulate and structural alterations occur in the process of tumor progression. 1 , 2 Such genomic variations could give rise to tumor antigens, which could be recognized by the immune system as nonself and elicit cellular immune responses. 3 , 4 The immune system plays an essenti
These circRNAs are generated primarily through a type of alternative RNA splicing called ‘back-splicing’, in which a splice donor splices to an upstream acceptor rather than a downstream acceptor (Figure 1 A) [ 8 , 12 , 14 , 16 , 17 ].
guo2014-expanded-identification-and-characterization-of-mammalian-circular
not defined in this paper's own words; the circularising reaction that makes a circRNA; the paper proposes it as a route to protein isoforms parallel to, and distinct from, ordinary alternative splicing
legnini2017-circ-znf609-is-a-circular-rna-that
Generation of protein isoforms via back-splicing and circularization of selected exons from primary mRNA transcripts is an intriguing mechanistic alternate to conventional alternative splicing.
not defined in this paper's own words; living cellular members of microbiota
berg2020-microbiome-definition-re-visited-o
The microbiota comprises all living members forming the microbiome. Etymology and differences of both terms are explained in Table 2 . Bacteria, archaea, fungi, algae, and small protists should be considered as members of the microbiome [ 25 ]; most microbiome researchers agree with this definition. The integration of phages, viruses, plasmids, and mobile genetic elements is one of the most contro
used operationally for all microbial cells in the body, because bacteria outnumber eukaryotes and archaea by 2-3 orders of magnitude
sender2016-revised-estimates-for-the-number-o
Bacteria overwhelmingly outnumber eukaryotes and archaea in the human microbiome by 2–3 orders of magnitude [7,8]. We therefore sometimes operationally refer to the microbial cells in the human body as bacteria.
not defined in this paper's own words; the one assay the hybrid loses
Sloin2022-hybrid-offspring-of-c57bl-6j-mice-exhibit-im
First, compared with the C57 progenitors, HYB exhibited similar or improved performance in every assay used, with one exception: balance performance in the three-month-old age group.
in the 1950s medical rhetoric, an equilibrium that still valued women as supports to others
cooper2016-medical-feminism-working-mothers
It reproduced unconscious sexisms, however, in moving women towards an ideal model of implicitly neutral masculine lifestyle, which was itself predicated on their continued emotional labour
not defined in this paper's own words; the therapeutic goal of balancing overactive minds and bodies
nathoo2016-therapeutic-relaxation-britain
Implicit and recurrent in this history of relaxation therapy is the concept of “balance”. Key therapeutic goals of relaxation have been to balance overactive minds and bodies
a region of parameter space where the cost gradient is exponentially small in the number of qubits
mcclean2018-barren-plateaus-quantum-neural-networks
By concentration of measure, a random walk will have exponentially small probability of exiting the barren plateau.
not defined in this paper's own words; a flat region of the training landscape where gradients are exponentially small
mcclean2018-barren-plateaus-quantum-neural-networks
As a result, if a circuit is of sufficient depth that for any ∂ k E , either U − or U + forms a 2-design, then with high probability one will produce an ansatz state on a barren plateau of the quantum landscape, with no interesting search directions in sight.
not defined in this paper's own words; factors that obstruct implementation change
lewis2018-classification-causality-implementation-mechanisms
In recent years, there has been growing recognition of the importance of implementing evidence-based practices as a way to improve the quality of health care and public health. However, the results of implementation efforts have been mixed. About two-thirds of efforts fail to achieve the intended change ( 2 ), and nearly half have no effect on outcomes of interest ( 3 ). Implementation strategies
not defined in this paper's own words; hindering determinants treated as independent variables affecting implementation outcomes
nilsen2015-implementation-theories-models-frameworks
Determinant frameworks describe general types (also referred to as classes or domains) of determinants that are hypothesized or have been found to influence implementation outcomes, e.g. health care professionals’ behaviour change or adherence to a clinical guideline. Each type of determinant typically comprises a number of individual barriers (hinders, impediments) and/or enablers (facilitators),
historical-reference sense: uncertain pre-depletion regional coral cover
bruno2007-regional-decline-coral-cover-indo-pacific
Historically, i.e., 100–1000 y.b.p., average coral cover in the Indo-Pacific was probably approximately 50% [39] . Generating natural baselines to estimate the long-term impact of human activities on species and ecosystems is always difficult, particularly in the ocean since records are rarely kept until a resource is already significantly depleted [40] . Humans have affected fringing reefs close
not defined in this paper's own words; the comparison that carries the confounds
Huang2016-persistent-neural-activity-in-auditory-corte
The proportions of units with significant delay/baseline spike-rate ratios are also provided for high- and low-WM-load trials, respectively. https://doi.org/10.7554/eLife.15441.008 Figure 4—source data 1 Working-memory related neuronal activity identified by between-task comparison.
FOR ABOUT HALF THIS COHORT, NOT A MEASUREMENT: the MDRD equation solved backwards `ASSUMING a glomerular filtration rate of 75 ml/minute/1.73 m 2`, then the LOWEST of three candidate values taken
hoste2006-rifle-criteria-for-acute-kidney-in
For patients without chronic kidney insufficiency as reported in the medical history, we calculated a serum creatinine level using the MDRD equation [ 16 ] (Cr MDRD ) as recommended by the Acute Dialysis Quality Initiative, by solving the MDRD equation for serum creatinine assuming a glomerular filtration rate of 75 ml/minute/1.73 m 2 . We then used the lowest creatinine value among the hospital a
and the rule at its origin: `the MDRD formula is used only to estimate the baseline when it is not known`
bellomo2004-acute-renal-failure-definition-out
Of course, many patients may present with acute renal dysfunction without any baseline measure of renal function. This presents a problem for a system that considers the change from baseline. One option is to calculate a theoretical baseline serum creatinine value for a given patient assuming a given normal GFR. By normalizing the GFR to the body surface area, a GFR of approximately 75–100 ml/min
Brain–computer interfaces
forenzo2024-deep-learning-bci-continuous-tracking
brain-computer interface
zhang2022-metaverse-in-education-definition
not defined in this paper's own words
chandler2019-antimicrobial-resistance-infrastructure
The first is the narrative that explains AMR as a One Health problem, building a growing number of sectors into the definition of the problem, and therefore as points to locate solutions. The second is recourse to established rhetoric and instruments of behaviour change for formulating solutions. While the first strengthens new paths of connection between sectors, between humans and ‘nature’, and
not defined in this paper's own words; implementation outcome supported by policy action
bull2020-world-health-organization-physical-activity-sedentary-behaviour-guidelines
The existence of guidelines, in isolation, is unlikely to lead to increases in population levels of physical activity. It is critical that they are supported by coordinated dissemination to key audiences and a sustained national public education communication strategy. Furthermore, communication activities must be combined with implementation of setting specific policy actions to support behaviour
a mixed but predominantly positive emotion that plays an important role in the enjoyment of tragic art
huron2020-enjoyment-sad-music
not defined in this paper's own words; mixed emotion linked to appreciation and sadness
menninghaus2017-measuring-aesthetic-emotions
When interpreting the sadness factor, we also need to consider the cross-loadings of items indicative of being moved on this factor. Whereas sadness and being moved emerged as separate components in both EFAs, being moved showed almost equal loadings on the prototypical aesthetic emotions factor (F7_2) and the sadness factor (F7_6). In contrast, the sadness items had no cross-loadings on F7_2. Thi
not defined in this paper's own words; curated shared datasets that enable comparison, competition, and cross-field entry
rasp2020-weatherbench
we currently lack a common benchmark challenge to accelerate progress. Benchmark datasets can have a huge impact because they make different algorithms quantitatively inter-comparable and foster constructive competition, particularly in a nascent direction of research. Famous examples are the computer vision datasets MNIST (LeCun et al., 1998) and ImageNet (Russakovsky et al., 2015). Further, well
not defined in this paper's own words; reference collections used to train and compare atomistic ML potentials
smith2017-ani1-dataset-organic-molecules
The GDB databases were fundamental in creating the QM7 dataset 18 , one of the first benchmark datasets for training atomistic ML potentials.
a trustee's ethical and moral actions are not based on self-interest
karikumpu2024-trust-in-leader-healthcare
refers to the trustor’s belief that the trustee has the trustor’s best interests in mind
stedham2019-mindfulness-trust-leadership
not defined in this paper's own words; phase produced by rotating the resonant elements under circular polarization
wang2017-broadband-achromatic-metasurface
The geometric phase, also called Berry phase, is produced from the rotation of the resonant elements in metasurface with a circularly-polarized incidence 39 .
not defined in this paper's own words; the geometric phase entering the SdH oscillation
chen2015-sandwiched-black-phosphorus-quantum-oscillations
β is known to be 0 in conventional 2D electron gas systems and 1/2 in graphene 1 , 2 .
Best frequency was defined as the frequency that elicited the maximum response.
Blackwell2020-auditory-cortex-shapes-sound-responses-in-th
The best frequency was determined by the sound frequency that evoked the largest averaged response across all the sound levels.
Chen2019-differential-cell-type-dependent-brain-state
not defined in this paper's own words; the frequency a neuron responds to most; the quantity electrical stimulation shifted and this manipulation did not
Blackwell2020-auditory-cortex-shapes-sound-responses-in-th
Electrical stimulation of AC, cooling or pharmacological inactivation affected the amplitude of sound-evoked responses and shifted the best frequency of neurons in IC, but it remains unknown how specific these effects are to direct feedback, and whether the effects of intra-cortical inhibition propagate to the IC.
Big Five Inventory-2
bodroza2024-personality-testing-large-language-models
not defined in this paper's own words
simchon2024-political-microtargeting-generative-ai
At the end of the survey, participants were requested to answer 12 items of the openness to experience personality factor, measured by BFI-2 ( 14 ) on a 1–5 Likert scale.
not defined in this paper's own words; dimensionality method with general and group factors
boateng2018-best-practices-developing-validating-scales
The test of dimensionality is a test in which the hypothesized factors or factor structure extracted from a previous model is tested at a different time point in a longitudinal study or, ideally, on a new sample ( 91 ). Tests of dimensionality determine whether the measurement of items, their factors, and function are the same across two independent samples or within the same sample at different t
not defined in this paper's own words; nested factor method for overlapping dimensions
boateng2018-best-practices-developing-validating-scales
Bifactor modeling, also referred to as nested factor modeling, is a form of item response theory used in testing dimensionality of a scale ( 102 , 103 ). This method can be used when the hypothesized factor structure from the previous model produces partially overlapping dimensions so that one could be seeing most of the items loading onto one factor and a few items loading onto a second and/or a
not defined in this paper's own words; spatial interpolation used in downscaling and infilling
abatzoglou2018-terraclimate-high-resolution-global-dataset
Climatologically aided interpolation was used to superimpose monthly climate anomalies from CRU Ts4.0 and JRA-55 with monthly climate normals from WorldClim to estimate monthly time series from 1958–2015. Climatologically aided interpolation is a simple spatial downscaling approach that employs bilinear interpolation of temporal anomalies from a higher-temporal, lower-spatial resolution dataset to
not defined in this paper's own words; the resampling method used to reach 0.0083-degree resolution
beck2018-koppen-geiger-climate-classification-maps
The present Köppen-Geiger classification map was derived from three climatic datasets for air temperature (WorldClim V1 and V2, and CHELSA V1.2) and four climatic datasets for precipitation (WorldClim V1 and V2, CHELSA V1.2, and CHPclim V1; Table 1 ). All datasets have a 0.0083° resolution with the exception of CHPclim V1.2, which has a 0.05° resolution. For consistency CHPclim V1.2 was downscaled
AS DEFINED BY THE OBSERVATION, not the cause: expression is `either strongly positive or undetected`. The model parameterises the two modes precisely because it cannot attribute any single zero to one cause or the other
finak2015-mast-a-flexible-statistical-framew
First, single-cell expression has repeatedly been shown to exhibit a characteristic bimodal expression pattern, wherein the expression of otherwise abundant genes is either strongly positive or undetected within individual cells.
not defined in this paper's own words; an abundance distribution with two peaks
lahti2014-tipping-elements-intestinal-ecosystem
Thus, bimodality of states provides only indirect evidence for bistability.
general-relativistic matched-filter search for compact-object mergers
abbott2016-gravitational-waves
GW150914 is confidently detected by two different types of searches. One aims to recover signals from the coalescence of compact objects, using optimal matched filtering with waveforms predicted by general relativity. The other search targets a broad range of generic transient signals, with minimal assumptions about waveforms. These searches use independent methods, and their response to detector
not defined in this paper's own words; matched-filter search for binary-coalescence signals
abbott2016-gravitational-waves
Search results from the generic transient search (left) and the binary coalescence search (right). These histograms show the number of candidate events (orange markers) and the mean number of background events (black lines) in the search class where GW150914 was found as a function of the search detection statistic and with a bin width of 0.2. The scales on the top give the significance of an even
either that the lexical description of the concept includes the synonym, or the reverse
almerud-osterberg2023-exposed-semantic-concept
not defined in this paper's own words; THE BINDING OF ARBITRARY RELATIONS AND MEDIATING THEIR FLEXIBLE EXPRESSION - the widened job description that makes the review possible
Billig2022-the-hearing-hippocampus
One idea is that the hippocampus is important for the binding of arbitrary relations and mediating their flexible expression ( Cohen and Eichenbaum, 1993 , Lisman et al., 2017 ).
a good descriptor for ammonia decomposition catalysts
xie2019-high-entropy-alloy-ammonia-decomposition
the descriptor that places each HEA composition on the activity volcano
xie2019-high-entropy-alloy-ammonia-decomposition
It is noticed that the most active HEA-Co 25 Mo 45 catalyst has a Δ E N value of ~79 kJ/mol, which is very close to the Δ E N (84 kJ mol −1 ) 24 of Ru, explaining the high and comparable catalytic activities of the HEA-Co x Mo y to Ru-based catalysts.
The bio-refinery concept originates from the petroleum industry.
boukhari2020-trends-in-seaweed-extract-based-biostimulants-manufacturing
a facility that combines the biomass conversion process with equipment to produce a wide range of bio-based products such as biofuels and biomaterials
chemat2012-green-extraction-natural-products
not defined in this paper's own words; R open-source statistical-genomics project
ritchie2015-limma-differential-expression
The limma package is a core component of Bioconductor, an R-based open-source software development project in statistical genomics ( 1 , 2 ). It has proven a popular choice for the analysis of data from experiments involving microarrays ( 3 , 4 ), high-throughput polymerase chain reaction (PCR) ( 5 ), protein arrays ( 6 ) and other platforms. The package is designed in such a way that, after initi
not defined in this paper's own words; repository and ecosystem for R bioinformatics packages
mcmurdie2013-phyloseq-microbiome-analysis
In spite of all of these highly relevant tools, we recently described the lack of a satisfactory standard within Bioconductor [34] (or R generally) for importing the data files from the most popular OTU-clustering applications, or representing this data in a complete, integrated class [31] . One Bioconductor package, OTUbase [35] , pursues some of these goals, but has no support for phylogenetic t
not defined in this paper's own words; a collaborative open-source software initiative for computational biology and bioinformatics
gentleman2004-bioconductor-open-software-development
The Bioconductor project [ 1 ] is an initiative for the collaborative creation of extensible software for computational biology and bioinformatics (CBB). Biology, molecular biology in particular, is undergoing two related transformations. First, there is a growing awareness of the computational nature of many biological processes and that computational and statistical models can be used to great b
not defined in this paper's own words; distribution host for limma
ritchie2015-limma-differential-expression
The limma software is freely available online as part of the Bioconductor project ( http://www.bioconductor.org ). More than 120 other Bioconductor packages make use of limma (as of March 2014). The limma package is used as a building block or as the underlying computational engine by a number of software projects designed to provide user-interfaces for gene expression data analysis including limm
Biofilm formation occurs in four generalized stages including: (1) bacterial cell attachment, (2) proliferation, (3) biofilm maturation, and (4) detachment.
masters2019-evolving-concepts-in-bone-infection-redefining-biofilm
not defined in this paper's own words; community phenotype induced through quorum sensing
berg2020-microbiome-definition-re-visited-o
Secondary metabolites play an essential role in mediating complex interspecies interactions and ensure survival in competitive environments. Quorum sensing (QS) induced by small molecules like n -acyl-homoserine lactones or peptides allows bacteria to control cooperative activities and adapts their phenotypes to the biotic environment, resulting, e.g., in cell-cell adhesion or biofilm formation [
includes the views of both medical and healthcare professionals who decide whether someone is recovered from a disease or is still considered diseased
friedman2021-concept-of-recovery-meanings
not defined in this paper's own words; the provider's view, in which adherence means following professional directions
hillman2020-medication-experience-concept
In contrast to the biomedical perspective on medication adherence, which expects the patient to follow the directions and recommendations of healthcare professionals, the lived experience perspective provides an alternative paradigm to viewing patients’ attitudes and behaviors regarding medication use
emphasizes a holistic health perspective in which biological, psychological, and social health symptoms and conditions are causally influenced by each other
gattis2022-maltreatment-in-sports-concept
a new basis for care which included care of the mind and body
byrne2020-person-centred-care-nursing-definition
not defined in this paper's own words; Engel's model tying social influences to the body and the mind
doyle2024-social-health-conceptualization
In this way, our tripartite model of health is distinct from Engel’s ( 1977 ) biopsychosocial model, which asks its users to consider each dimension in thinking about the causes, treatment, and societal management of illness, but does not treat physical, mental, and social health as separate distinct dimensions of health
not defined in this paper's own words; a graph whose two vertex sets connect only across sets
bessi2015-science-conspiracy-misinformation
Bipartite Networks and Community Detection . We consider a bipartite network having as nodes users and affiliation the Facebook pages. A comment to a given information posted by a page determines a link between a user and a page. More formally, a bipartite graph is a triple G = ( A , B , E ) where A = { a i ∣ i = 1 … n A } and B = { b j ∣ j = 1 … n B } are two disjoint sets of vertices, and E ⊆ A
not defined in this paper's own words; structural restriction enabling efficient RBM training
voulodimos2018-deep-learning-for-computer-vision
A Restricted Boltzmann Machine (\ [34, 35\]) is an undirected graphical model with stochastic visible variables **v** ∈ {0, 1}_D_ and stochastic hidden variables **h** ∈ {0, 1}_F_, where each visible variable is connected to each hidden variable. An RBM is a variant of the Boltzmann Machine, with the restriction that the visible units and hidden units must form a bipartite graph. This restriction
an event that occurs during the labor and delivery process involving actual or threatened serious injury or death to the mother or her baby, in which women experience intense feelings of fear, helplessness, loss of control, and horror
sun2022-psychological-birth-trauma
first physical injury at birth, later also psychological disturbance
sun2022-psychological-birth-trauma
Results of the literature showed that earlier birth trauma almost exclusively refers to maternal or neonatal physical trauma during birth, i.e., tissue and organ damage, such as maternal damaged pelvic floor function, neonatal cephalohematoma, clavicular fracture, and brachial plexus injury ( Perlow et al., 1996 ; Meyer et al., 2000 ).
not defined in this paper's own words
apelberg2007-cord-serum-pfos-pfoa-birth-size, fei2007-perfluorinated-chemicals-fetal-growth
Ponderal index was calculated as the ratio of birth weight in grams to length in centimeters cubed, multiplied by 100
not defined in this paper's own words; the quantity macrosomia is operationalised by - above 4000 g, with one exception
wendland2012-gestational-diabetes-and-pregnancy
As seen in Figure 2 , a total of five studies allowed evaluation of the association between GDM diagnosed through WHO criteria and fetal macrosomia (defined by authors as birth weight > 4000 g, except Aberg et al [ 12 ]). The corresponding pooled relative risk (RR) was 1.81 (95%CI 1.47-2.22; p < 0.001), with very homogenous results across studies (I 2 = 0%).
not defined in this paper's own words; having two alternative stable states
lahti2014-tipping-elements-intestinal-ecosystem
Thus, bimodality of states provides only indirect evidence for bistability.
one species or the other may be the sole winner in the system depending on initial frequency
gjini2023-invasion-resistance-multispecies-communities
a set equipped with two topologies
oudetallah2023-r-compactness-bitopological
The bitopological space subject might be written as 𝑍 = ( 𝑍 , 𝛾 1 , 𝛾 2 ) , where 𝛾 1 and 𝛾 2 are two topologies defined on Z [8]. This concept is connected with a former investigation that was carried out on bitopological spaces so that each topology can be defined as a set of points that possesses nearby related points and satisfies specific axioms. In [9], Kelly defined each of the pairwise nor
not defined in this paper's own words; a set with two topologies
oudetallah2023-r-compactness-bitopological
This paper defines the so-called pairwise r-compactness in topological and bitopological spaces. In particular, several inferred properties of the r-compact spaces and their connections with other topological and bitopological spaces are studied theoretically. As a result, several novel theorems of the r-compact space are generalized on the pairwise r-compact space. The results established in this
not defined in this paper's own words; masking hypotheses, conditions, labels, or results to limit bias
munafo2017-manifesto-reproducible-science
Protecting against cognitive biases. There is a substantial literature on the difficulty of avoiding cognitive biases. An effective solution to mitigate self-deception and unwanted biases is blinding. In some research contexts, participants and data collectors can be blinded to the experimental condition that participants are assigned to, and to the research hypotheses, while the data analyst can
not defined in this paper's own words; masking used to reduce bias in animal selection and outcome assessment
kilkenny2010-arrive-guidelines-reporting-animal-research
Failure to describe research methods and to report results appropriately therefore has potential scientific, ethical, and economic implications for the entire research process and the reputation of those involved in it. This is particularly true for animal research, one of the most controversial areas of science. The largest and most comprehensive review of published animal research undertaken to
IN THIS TRIAL A MATTER OF DEGREE THAT THE AUTHORS MEASURED RATHER THAN ASSERTED. Every participant was told psilocybin would be given on each session, so the comparison is high dose against a very low dose, not against an inert placebo. The paper's own verdict is `SOME protection`, not blinding
griffiths2016-psilocybin-produces-substantial-an
Overall, we conclude that the blinding procedures provided some protection against a priori monitor expectancy strongly determining outcomes of the psilocybin dose manipulation.
Body mass index
lahti2014-tipping-elements-intestinal-ecosystem, saunders2022-body-dissatisfaction-weight-stigma
body mass index (BMI)
roth2020-global-burden-cardiovascular-diseases
Obesity, defined by elevated BMI (≥30 kg/m 2 ), has reached epidemic levels worldwide.
Boolean network
briones-andrade2024-pancreatic-cancer-mathematical-model
hexagonal boron nitride
chen2015-sandwiched-black-phosphorus-quantum-oscillations
not defined in this paper's own words; body weight relative to height
saunders2022-body-dissatisfaction-weight-stigma
Body mass index (BMI) moderated these relations such that individuals with higher self-reported BMI were more likely to report lower correlations between the constructs.
not defined in this paper's own words; population risk-factor distribution used to project diabetes mortality
mathers2006-projections-global-mortality-burden-disease
Initial regression analysis for diabetes mellitus found inconsistent trends between males and females, probably reflecting the large variations across countries and inaccuracies in recording diabetes as the underlying cause of death in many death registration systems. While overall trends for diabetes mortality showed no consistent relationship across the sexes or levels of development, the regres
not defined in this paper's own words; the host factor negatively associated with UCI and UCII
lahti2014-tipping-elements-intestinal-ecosystem
Among the 1,006 western adults, body mass index (BMI) was negatively associated with UCI and UCII.
a WLOGP-TPSA graphical classification of passive gut and brain penetration
daina2017-swissadme-free-web-tool
After all calculations completed, the “Show BOILED-Egg” red button appears below the sketcher to display the graphical output on the same page (as exemplify in Fig. 4 ). This consists primarily in the BOILED-Egg, an intuitive method to predict simultaneously two key ADME parameters, i.e. the passive gastrointestinal absorption (HIA) and brain access (BBB). Although conceptually very simple as it r
not defined in this paper's own words; graphical classification model for HIA, BBB, and P-gp behaviour
daina2017-swissadme-free-web-tool
To be effective as a drug, a potent molecule must reach its target in the body in sufficient concentration, and stay there in a bioactive form long enough for the expected biologic events to occur. Drug development involves assessment of absorption, distribution, metabolism and excretion (ADME) increasingly earlier in the discovery process, at a stage when considered compounds are numerous but acc
a statistical technique which enables estimation of confidence intervals by repeated resampling of a representative population
litjens2016-deep-learning-histopathology
not defined in this paper's own words; resampling-based assessment of split reliability
price2010-fasttree-approximately-maximum-likelihood-trees
Because of its speed, FastTree 2 is suitable for bootstrapping. However, to provide a quicker estimate of the tree's reliability, FastTree 2 provides local support values based on the Shimodaira-Hasegawa (SH) test [16] , [17] , [19] . FastTree 2 should be useful for reconstructing the tree of life and for analyzing the millions of uncharacterized proteins that are being identified by genome sequen
The bootstrapping procedure obtains a high-quality estimate of the statistical distribution of the observed data.
Ress2013-tonotopic-organization-in-the-depth-of-human
not defined in this paper's own words; resampling procedure used by parallel analysis
boateng2018-best-practices-developing-validating-scales
The necessary sample size is dependent on several aspects of any given study, including the level of variation between the variables, and the level of over-determination (i.e., the ratio of variables to number of factors) of the factors ( 59 ). The rule of thumb has been at least 10 participants for each scale item, i.e., an ideal ratio of respondents to items is 10:1 ( 60 ). However, others have
detect all body parts and group them into animals by connectivity
pereira2022-sleap-multi-animal-pose-tracking
In the bottom–up approach, all body parts are detected within an image and then grouped into animals based on their connectivity (Fig. 3a ). This approach has the advantage that it only requires a single pass through the neural network, which outputs multi-part confidence maps and part affinity fields (PAFs) 19 , a set of vector fields that represent spatial relationships between pairs of body par
not defined in this paper's own words; simulation aggregating dynamics from constituent components
farisco2018-large-scale-brain-simulation-and-disorders-o
We suggest that a mix of the two strategies (i.e., top-down and bottom-up, focusing on global brain dynamics or focusing on discrete brain components and then aggregating them) can be useful, resulting in a top-down/bottom-up multilevel approach. Such a hybrid strategy would entail starting from a theoretical description of the behavior or property to model (e.g., a visual conscious process), proc
not defined in this paper's own words; cognitive limitation on moral decision-making
frank2019-human-biases-autonomous-vehicle-moral-dilemmas
Another bias, when it comes to moral decisions in the dilemmas that are faced by autonomous vehicles, is rooted in the psychological constraints of people’s beliefs and decisions. The underlying theory of bounded rationality postulates that people’s decisions are biased by the cognitive limitations of their minds 24 , 25 , resulting in being biased by the emotional proximity of the event or people
not defined in this paper's own words; resource-bounded but reason-guided choice
hausman2015-evidence-libertarian-paternalism
Bounded rationality is not irrationality. … On the contrary, I think there is plenty of evidence that people are generally quite rational; that is, they usually have reasons for what they do. Herbert Simon 1985
not defined in this paper's own words; central side of bidirectional gut-brain interaction
rinninella2019-what-is-the-healthy-gut-microbiota
The brain and the gut are connected via the gut–brain axis with bidirectional interactions between the central nervous system, the enteric nervous system, and the gastrointestinal tract. These bidirectional interactions enable the brain to influence gastrointestinal functions as well as immune functions
not defined in this paper's own words; plastic organ within a larger dynamical system
malafouris2018-mind-material-engagement
Of course, the role of the brain as an assemblage of neural activation and de-activation patterns remains central. However, the centrality of the brain does not lie in its ability to constitute mentality by internalising and representing the world; rather, it lies in the ability of the brain to connect, to attend, to respond, to attune and relate to the world using its extraordinary plasticity and
not defined in this paper's own words; contested claim that neural intervention can selectively direct mind or behavior
schleim2021-neurorights-history-brain-control
Valenstein discusses whether brain stimulation could produce a population of slaves or robots and concludes: “Brain stimulation technology should be examined in other contexts besides those related to the very remote possibility that it can be used to control individuals or groups of people” (Valenstein, 1973 : 85). There were a great number of reports, though, suggesting the possibility to manipu
technological intervention interpreted as directing psychological or behavioral processes
schleim2021-neurorights-history-brain-control
Delgado and Valenstein both did their research in the Cold War period when scenarios like brain control apparently seemed very realistic, to which the former contributed himself with his vision of the psychocivilized society, but which the latter described as unlikely. 9 The idea that human thought and behavior must be controlled to prevent disaster seems to have been particularly prevalent then,
not defined in this paper's own words; estimated evolutionary times on the phylogeny
isaac2007-mammals-edge-conservation-priorities-threat-phylogeny
EDGE priorities are also robust to several other forms of uncertainty. Like all phylogenetic methods, the precise EDGE scores are dependent on the topology and branch lengths of the phylogeny. However, errors in the phylogeny are unlikely to alter the identity of high-ranking species, particularly for clades of several hundred species. Topological uncertainty is usually expressed in supertrees as
not defined in this paper's own words; evolutionary-length parameters on tree edges
price2010-fasttree-approximately-maximum-likelihood-trees
We recently described a scalable method for inferring phylogenies, FastTree 1.0 [2] . FastTree 1.0 is based on the “minimum-evolution” principle – it tries to find a topology that minimizes the amount of evolution, or the sum of the branch lengths. FastTree 1.0 uses a heuristic variant of neighbor joining [3] , [4] to quickly find a starting tree and uses nearest-neighbor interchanges (NNIs) to re
colour sense (a visual property, lightness from white to black) versus cross-sensory sense (a common intensity dimension along which sounds and smells can be 'bright', per von Hornbostel and sensory brightness equivalence)
olfactory-colour-crossmodal-correspondences
Given that a number of the studies that have just been mentioned went some way toward matching the intensity and, in some cases, also the pleasantness, of the odorants involved, it should perhaps not come as a surprise that these aspects of participants’ response to the odours were found to have little impact on the pattern of colour choices obtained. However, in the few studies where the intensit
fluorescence output of a dye at matched absorbance, driven by its quantum yield
antaris2017-nir-ii-molecule-protein-fluorophore
Here, we report tailoring the supramolecular assemblies of protein complexes with a sulfonated NIR-II organic dye (CH-4T) to produce a brilliant 110-fold increase in fluorescence, resulting in the highest quantum yield molecular fluorophore thus far.
not defined in this paper's own words; clinical material from which the virus was isolated
zhou2020-a-pneumonia-outbreak-associated-wi
Since the outbreak of severe acute respiratory syndrome (SARS) 18 years ago, a large number of SARS-related coronaviruses (SARSr-CoVs) have been discovered in their natural reservoir host, bats 1 – 4 . Previous studies have shown that some bat SARSr-CoVs have the potential to infect humans 5 – 7 . Here we report the identification and characterization of a new coronavirus (2019-nCoV), which caused
not defined in this paper's own words; the specimen sequenced
wu2020-new-coronavirus-respiratory-disease-china
To investigate the possible aetiological agents associated with this disease, we collected bronchoalveolar lavage fluid (BALF) and performed deep meta-transcriptomic sequencing. The clinical specimen was handled in a biosafety level 3 laboratory at Shanghai Public Health Clinical Center. Total RNA was extracted from 200 μl of BALF and a meta-transcriptomic library was constructed for pair-end (150
Brugada Syndrome
melo2023-deep-learning-ecg-brugada
not defined in this paper's own words; a short six-item scale of bouncing back after strain
yan2022-resilience-stroke-patients
The six-item BRS was developed for assessing resilience traits—the ability to recover from stress or trauma
not defined in this paper's own words; urban and paved direct-pressure settings
venter2016-global-terrestrial-human-footprint-maps
Built environments are human produced areas that provide the setting for human activity. In the context of the human footprint, we take these areas to be primarily urban settings, including buildings, paved land and urban parks. Built environments do not provide viable habitats for many species of conservation concern, nor do they provide high levels of ecosystem services 24–27 . As such, built en
not defined in this paper's own words; human environments where diversity restoration is proposed
berg2020-microbiome-definition-re-visited-o
The importance of microbiomes goes beyond the health of individual hosts. Microbes from different hosts and ecosystems can strongly interact and influence one other [ 204 , 205 ]. These observations have led to the slogan “A healthy environment promotes healthy humans” which endorsed the “One Health concept.” According to the World Health Organization, “One Health” is an approach designing and imp
DALY sense: equivalent years of full health lost to disease and injury
mathers2006-projections-global-mortality-burden-disease
The WHO has undertaken new assessments of the GBD for 2000–2002, with consecutive revisions and updates published annually in WHO's World Health Reports. These assessments use a health gap measure, the DALY, developed by Murray and Lopez [ 30 ] to quantify the equivalent years of full health lost due to diseases and injury in WHO member states. The data sources and methods used for the GBD 2002 ar
not defined in this paper's own words; population health loss projected as deaths, YLL, YLD, and DALYs
mathers2006-projections-global-mortality-burden-disease
Projections of burden of disease measured in disability-adjusted life years (DALYs) were then developed for the three scenarios based on projected mortality rates and alternative assumptions for those causes with little or no mortality. Population projections were developed based on United Nations Population Division projections of fertility and net migration and our projected mortality rates. We
not defined in this paper's own words; another name for treatment burden
demain2015-treatment-burden-long-term-conditions
Navigating services, interacting with health professionals and enacting treatments also creates work and may generate disruptions to patients’ wellbeing and functioning [ 3 ].This has been termed treatment burden or burden of treatment (BoT)
the impact of the ‘work of being a patient’ on functioning and well-being
tran2015-burden-of-treatment-taxonomy
not defined in this paper's own words; alternative reference aligner
bolger2014-trimmomatic-flexible-trimmer
To illustrate the value of data preprocessing, we evaluated two different scenarios: reference-based alignment using Bowtie 2 ( Langmead and Salzberg, 2012 ) and BWA ( Li and Durbin, 2009 ) against the Escherichia coli K-12/MG1655 reference (NCBI sequence NC_000913.2 ), and de novo assembly using Velvet ( Zerbino and Birney, 2008 ), on public E.coli K-12/MG1655 datasets (SRA datasets SRX131047 and
not defined in this paper's own words; one of the two aligners compared - it annotates indels preferentially as deletions
zook2016-extensive-sequencing-of-seven-huma
GraphMap maps more reads than BWA MEM ont2d, which cover a greater region of the genome ( Table 13 ), and allows a higher error rate ( Table 14 ). The proportion of mismatches to indels was similar for both aligners, however BWA annotates indels preferentially as deletions, and GraphMap favors insertions.
not defined in this paper's own words; the hippocampal region the real recordings come from
Spivak2022-deconvolution-improves-the-detection-and-qua
The dataset consisted of 1041 PYR and 215 INT recorded using high-density silicon probes implanted in hippocampal region CA1 of three mice (Fig.
not defined in this paper's own words; the output field
Drieu2019-hippocampal-sequences-during-exploration-mec
Black traces, CA1 local field potential.
a computerized procedure to provide a second objective opinion for the assistance of medical image interpretation and diagnosis
cheng2016-computer-aided-diagnosis-deep-learning-breast
computer-aided diagnosis
cheng2016-computer-aided-diagnosis-deep-learning-breast, tiulpin2018-knee-osteoarthritis-deep-learning
a class managing descriptor dependencies, caching, errors, and parallel calculation
moriwaki2018-mordred-molecular-descriptor-calculator
The Calculator class manages the dependencies of Descriptors, caches the results, handles errors, and enables parallel computing. Users can register the Descriptor instance (register itself), Descriptor class (preset of Descriptor), module (presets of all descriptors in the module), or a list of these in a Calculator instance. To calculate descriptors of a single molecule, an instance of Calculato
not defined in this paper's own words; class registering and computing descriptors
moriwaki2018-mordred-molecular-descriptor-calculator
Mordred consists of two main classes: “Descriptor” and “Calculator” (Fig. 1 ). The algorithms of molecular descriptors are implemented in the subclass of the Descriptor class. Because there are interdependencies between the molecular-descriptor calculations, one subclass can depend on other subclasses for better efficiency in Mordred. Many descriptor-calculation algorithms provide multiple results
Calmodulin
itani2023-calcium-signal-mycelial-network
complementary and alternative medicine
gale2014-sociology-complementary-alternative-medicine
convex analysis of mixtures
wang2016-transcriptional-heterogeneity-modelling
not defined in this paper's own words; the curated global repository of small-molecule crystal structures
groom2016-cambridge-structural-database
This paper is the definitive article describing the creation, maintenance, information content and availability of the Cambridge Structural Database (CSD), the world’s repository of small molecule crystal structures.
not defined in this paper's own words; the database of deposited crystal structures
moosavi2020-metal-organic-framework-diversity
to the MOFs reported in Cambridge structural database (CSD) 26 in the preceding years is shown with red line
Computer Assisted Mechanistic Evaluation of Organic Reactions
coley2019-graph-convolutional-chemical-reactivity
a fully-automated CASP
wang2017-protein-contact-deep-learning
not defined in this paper's own words; tumor-antigen vaccination strategies
zhang2020-cancer-immunotherapy-tumor-infiltrating-immune-cells
Here, we briefly review the historical studies that led to the development of several major types of immunotherapy applied in cancer treatment (Fig. 1 ). Fig. 1 The major categories of immunotherapy. Different forms of cancer immunotherapy, including oncolytic virus therapies, cancer vaccines, cytokine therapies, adoptive cell transfer, and immune checkpoint inhibitors, have evolved and shown prom
tumor-antigen strategies triggering T-cell-mediated antitumor responses
zhang2020-cancer-immunotherapy-tumor-infiltrating-immune-cells
Cancer vaccines utilize tumor-specific antigens to trigger T-cell-mediated antitumor immune responses. Pivotal studies came from the identification of MZ2-E and MZ2-D, both of which are melanoma-derived antigens encoded by the MAGE (melanoma-associated antigen) gene family that could be recognized by cytotoxic T cells to trigger antitumor immune responses. 34 , 35 Simultaneously, another human mel
Cap-independent translation mediated by an IRES can exhibit varying levels of efficiency depending on cell context and is generally considered less efficient than cap-dependent translation when included in bicistronic linear mRNA 23 .
wesselhoeft2018-engineering-circular-rna-for-potent-and-stable
Under certain conditions, such as cellular stress or viral infection, an alternative mechanism known as cap-independent translation is employed to initiate mRNA translation through internal ribosome entry site (IRES) [ 64 , 65 ].
lei2020-translation-and-functional-roles-of-circular-rnas
not defined in this paper's own words; translation initiated without the 5' cap - a mechanism first described in VIRAL RNAs and only later found in cellular ones, so the name entered cell biology already carrying a virology history
legnini2017-circ-znf609-is-a-circular-rna-that
Cap-independent translation, driven by the so-called IRES, was initially described in viral RNAs ( Pelletier and Sonenberg, 1988 ) and subsequently identified also in cellular RNAs
The capability approach purports that capabilities to achieve well-being are a matter of what people are able to do and to be, and thus the kind of life they are effectively able to lead.
bircher2014-defining-health-determinants
the genuine opportunities (capabilities) people have to achieve the kind of lives they value
demain2015-treatment-burden-long-term-conditions
discerns three main elements—well-being, functioning, and capabilities—and argues that freedom to achieve well-being is of primary moral importance
sanchini2022-vulnerability-aged-care
deforestation and land use: more uncertain, and in principle recoverable through reforestation on a century scale
hansen2013-climate-change
Deforestation carbon is more uncertain and potentially can be offset on the century time scale by storage in the biosphere, including the soil, via reforestation and improved agricultural and forestry practices.
fossil fuel: better measured, effectively permanent, and therefore the term that must be limited
hansen2013-climate-change
We bookkeep fossil fuel and deforestation carbon separately, because the larger fossil fuel term is known more accurately and this carbon stays in the climate system for hundreds of thousands of years.
not defined in this paper's own words; the strain of caring that leaves little room for learning digital skills
cho2025-digital-literacy-dementia-caregivers
Interestingly, caregiver burden, characterized by physical, emotional, and psychological strain, can limit caregivers’ ability to develop or utilize digital literacy skills
the caregiving role may contribute to increased stress, depression, anxiety, social isolation and poorer reported quality of life in comparison to the general noncaregiving population
mckenna2022-resilience-family-caregivers
not defined in this paper's own words; how easily holes move through the crystal
zhang2019-broadband-transparent-phase-change-photonics
The drastic resistivity increase with Se substitution is therefore mostly attributed to the reduction of carrier mobility (Fig. 4d ).
not defined in this paper's own words; how fast charge carriers move in the channel under a field
kim2015-large-area-multilayer-hexagonal-boron-nitride
The CVD-grown graphene on multilayer h-BN film yields a high carrier mobility of ∼24,000 cm 2 V −1 s −1 at room temperature, higher than that (∼13,000 2 V −1 s −1 ) with exfoliated h-BN.
cysteinyl tRNA synthetases
fukuto2018-hydropersulfides-concept
engineered synthetic receptors that redirect lymphocytes, most commonly T cells, to recognize and eliminate cells expressing a specific target antigen
sterner2021-car-t-cell-therapy-current-limitat
CARs are engineered synthetic receptors that function to redirect lymphocytes, most commonly T cells, to recognize and eliminate cells expressing a specific target antigen.
Critical Assessment of protein Structure Prediction, round 14, the community structure-prediction competition used as the benchmark
mirdita2022-colabfold
Predicting the three-dimensional (3D) structure of a protein from its sequence alone remains an unsolved problem. However, by exploiting the information in multiple sequence alignments (MSAs) of related proteins as the raw input features for end-to-end training, AlphaFold2 (ref. 1 ) was able to predict the 3D atomic coordinates of folded protein structures at a median global distance test total sc
not defined in this paper's own words; blind fourteenth Critical Assessment benchmark
jumper2021-highly-accurate-protein-structure-prediction-alphafold
Proteins are essential to life, and understanding their structure can facilitate a mechanistic understanding of their function. Through an enormous experimental effort 1 – 4 , the structures of around 100,000 unique proteins have been determined 5 , but this represents a small fraction of the billions of known protein sequences 6 , 7 . Structural coverage is bottlenecked by the months to years of
To determine the influence of these stage-generated auditory cues, we interleaved the texture trials with ‘Catch’-trials, in which textures were omitted but with all auditory cues present (start and stop tones), including the sounds generated by the stage translation
Mohan2018-sensory-representation-of-an-auditory-cued-t
not defined in this paper's own words; sum of landings and discards
pauly2016-catch-reconstructions-global-marine-fisheries
In addition to the reconstructions by sector, we also assign catches to either ‘landings' (that is, retained and landed catch) or ‘discards' (that is, discarded catch), and label all catches as either ‘reported' or ‘unreported' with regards to national and FAO data. Thus, reconstructions present ‘catch' as the sum of ‘landings' plus ‘discards'. Discarded fish and invertebrates are generally assume
contextualized interrelations among variables and outcomes that form building blocks of implementation theory
lewis2018-classification-causality-implementation-mechanisms
Causal pathway models represent interrelations among variables and outcomes of interest in a given context (i.e., the building blocks of implementation theory). Specifying the structure of causal relations enables scientists to empirically test whether the implementation strategies are operating via theorized mechanisms, how contextual factors moderate the causal processes through which implementa
not defined in this paper's own words; models linking strategies, mechanisms, modifiers, and outcomes
lewis2018-classification-causality-implementation-mechanisms
The science of implementation has offered little toward understanding how different implementation strategies work. To improve outcomes of implementation efforts, the field needs precise, testable theories that describe the causal pathways through which implementation strategies function. In this perspective piece, we describe a four-step approach to developing causal pathway models for implementa
not defined in this paper's own words; links specifying one activity's effect on another
aleksander2023-the-gene-ontology-knowledgebase-in
GO-CAMs are models of causal influences between gene products ( Thomas et al. 2019 ) or pathways. More precisely, a GO-CAM links the activities (GO MFs) of gene products together by causal relations that specify the effect of one activity on the other. Each element of a GO-CAM is an instance of an ontology class or other standard database identifiers, so GO-CAMs are highly structured and amenable
not defined in this paper's own words; relations whose structure is specified in a causal pathway model
lewis2018-classification-causality-implementation-mechanisms
Causal pathway models represent interrelations among variables and outcomes of interest in a given context (i.e., the building blocks of implementation theory). Specifying the structure of causal relations enables scientists to empirically test whether the implementation strategies are operating via theorized mechanisms, how contextual factors moderate the causal processes through which implementa
here a direct regulatory interaction of a transcription factor on a target, as opposed to mere correlation
reagor2023-pseudotime-lagged-causality
DELAY apparently recognizes the differences between input matrices of causally related genes and those of merely correlated genes
not defined in this paper's own words; what LONGITUDINAL STUDIES WILL BE IMPORTANT TO ESTABLISH and what the structural correlations do not show
Billig2022-the-hearing-hippocampus
Longitudinal studies, similar to those in taxi drivers ( Woollett and Maguire, 2011 ), will be important to establish causality in any of the above relationships.
While we are aware some studies comparing costs are labelled as CBAs, we recommend the use of this term for studies which include a monetary valuation of health outcomes.
husereau2022-consolidated-health-economic-evaluation-reporting-standards-2022
the term CHEERS recommends only for studies that value health outcomes in money
husereau2022-cheers-2022-statement
While we are aware some studies comparing costs are labelled as CBAs, we recommend the use of this term for studies which include a monetary valuation of health outcomes.
Chinese and Chinese-American
xiao2024-filial-piety-caregiving
canonical correlation analysis
li2020-deep-embedding-single-cell-clustering
not defined in this paper's own words; the abbreviation for chemical compound space
hoja2021-qm7x-quantum-mechanical-properties
A crucial aspect of drug discovery 1 and molecular materials design 2 is an extensive exploration and understanding of chemical compound space (CCS)—the extremely high-dimensional space containing all feasible molecular compositions and conformations.
the relative change in climatic suitability
thuiller2019-uncertainty-global-biodiversity-scenarios
Constrained Deconvolution
deneux2016-spike-estimation-calcium-imaging
circular dichroism
zhao2017-twisted-metamaterials-chirality-detection
It is also known as CDR1 antisense (CDR1as), as it is located on the opposite strand of the gene CDR1 .
kristensen2017-circular-rnas-in-cancer-opportunities-and-challenges
not defined in this paper's own words; the second name for ciRS-7, and in this paper's discussion the atypical case - not derived from pre-mRNA, containing only repeat elements
zheng2016-circular-rna-profiling-reveals-an
Specifically, the circRNA ciRS-7 (also termed CDR1as), which harbours more than 70 conventional miR-7-binding sites, has been identified as a miRNA inhibitor.
left explicitly open: whether an enucleated red blood cell is a cell is called a question of definition, and the paper's answer decides its headline number
sender2016-revised-estimates-for-the-number-o
Indeed, this opens an interesting tangential discussion on what should be defined as a cell.
not defined in this paper's own words; whole cellular object whose cytoplasm excludes the nucleus
carpenter2006-cellprofiler
Cell identification Object identification (also called segmentation) is the most challenging step in image analysis and its accuracy determines the accuracy of the resulting cell measurements. CellProfiler's object identification modules contain a variety of published and tested algorithms for identifying cells based on fluorescence, including work from our own group and others (Figure 1e ). In mo
not defined in this paper's own words in this sentence
simpson2024-collective-cell-migration-models
The main difference between the outcome of the barrier assays for the motile and proliferative population compared with the population where proliferation is suppressed is that cell proliferation leads to more rapid spatial expansion of the population.
not defined in this paper's own words; the outcome circHIPK3 modulates - assayed by CCK-8 and EdU incorporation across HuH-7, HCT-116, HeLa and HEK-293T
zheng2016-circular-rna-profiling-reveals-an
A subsequent cell proliferation assay indicated that the downregulation of circHIPK3, but not HIPK3 mRNA, significantly suppressed cell growth in different cell types ( Fig. 5c-e ). An EdU incorporation assay also revealed that the proliferation of various human cells was impaired on the knockdown of circHIPK3 expression ( Fig. 5f,g and Supplementary Fig. 7 ). Consistent with this result from the
a geometric benchmark for cellular jamming and tissue mechanical state; above 3.81 fluid-like, below solid-like
wolf2022-bioelectric-stimulation-collective-migration
Generally, an average cell shape index above the critical value of 3.81 in epithelia indicates a more fluid-like behavior, while a shape index below 3.81 indicates a more solid-like tissue.
a standard geometric benchmark for assessing cellular jamming and tissue mechanical state
wolf2022-bioelectric-stimulation-collective-migration
a network in which cells are nodes and receptor-ligand pairs form the edges
ramilowski2015-ligand-receptor-signalling-network
In summary, we introduce the first large-scale map of cell-to-cell signalling by presenting a network, where cells are the nodes and receptor–ligand pairs form the edges.
not defined in this paper's own words; cells as nodes with many ligand-receptor messages between them
ramilowski2015-ligand-receptor-signalling-network
Unlike a transcriptional regulatory network, which is generally simplified to a set of genes as nodes and transcription factor binding as regulatory edges, a cell-to-cell network consists of cells as nodes and between any two cells there can be hundreds of potential messages passed between them.
AS MEASURED HERE, MOLECULAR ONLY. The paper's own last limitation says the link to functional, anatomical, morphological and electrophysiological properties REMAINS. Four of the five claimants on the word are unmeasured, and the taxonomy is named for all five
zeisel2018-molecular-architecture-of-the-mous
Finally, we have described only molecular cell types, but the task of linking molecular properties to functional, anatomical, morphological, and electrophysiological properties remains.
not defined in this paper's own words; one contextual dimension added from an external ontology
aleksander2023-the-gene-ontology-knowledgebase-in
The context can be further specified with other ontologies to capture the cell type
AS USED HERE, IN TWO INCOMPATIBLE ROLES IN ONE PAPER. In the abstract it is `a source of NUISANCE variation` to be adjusted away. In the results it `reflects BOTH technical factors AND biological differences`, its deviance rivals the treatment's, and it may be confounded with treatment because treated cells grow. THE SAME NUMBER IS THE ARTEFACT AND THE SIGNAL
finak2015-mast-a-flexible-statistical-framew
We and other groups [ 4 – 7 ] have shown that the proportion of cells with detectable expression reflects both technical factors and biological differences between samples.
not defined in this paper's own words; the fraction of genes expressed in a cell - proposed as a nuisance covariate and shown to carry biological signal
finak2015-mast-a-flexible-statistical-framew
We argue that the cellular detection rate, the fraction of genes expressed in a cell, should be adjusted for as a source of nuisance variation.
The central executive is a system of attention control with limited processing capacity.
Camina2017-the-neuroanatomical-neurophysiological-and-p
not defined in this paper's own words; the attention controller of working memory
Camina2017-the-neuroanatomical-neurophysiological-and-p
Working memory consists of four elements that process information: the central executive (attention control), the visuospatial sketchpad (creates and maintains a visuospatial representation), the phonological buffer (stores and consolidates new words), and the episodic buffer (stores and integrates information from different sources).
not defined in this paper's own words; brain-side component of the gut-brain axis
rinninella2019-what-is-the-healthy-gut-microbiota
The brain and the gut are connected via the gut–brain axis with bidirectional interactions between the central nervous system, the enteric nervous system, and the gastrointestinal tract. These bidirectional interactions enable the brain to influence gastrointestinal functions as well as immune functions
not defined in this paper's own words; tissue system protected from xenobiotics by P-gp
daina2017-swissadme-free-web-tool
The knowledge about compounds being substrate or non-substrate of the permeability glycoprotein (P-gp, suggested the most important member among ATP-binding cassette transporters or ABC-transporters) is key to appraise active efflux through biological membranes, for instance from the gastrointestinal wall to the lumen or from the brain 40 . One major role of P-gp is to protect the central nervous
Consolidated Framework for Implementation Research
eslava-schmalbach2019-equity-implementation-research, smith2020-rapid-implementation
Consolidated Framework of Implementation Research
klaic2022-implementability-healthcare-interventions
a completely water-soluble organic NIR-II dye with sulfonic acid groups
antaris2017-nir-ii-molecule-protein-fluorophore
Herein, we demonstrate that changing the functional groups from carboxylic to sulfonic acid results in a completely water-soluble organic NIR-II dye (CH-4T) that readily forms supramolecular assemblies with plasma proteins to produce a brilliant increase in fluorescent brightness 18 .
a sulfonated NIR-II organic dye
antaris2017-nir-ii-molecule-protein-fluorophore
`any property or feature of the virus`, including genome composition, capsid structure, envelopment, gene expression programme, HOST RANGE, PATHOGENICITY and sequence similarity. AND ONE FAMILY OF CHARACTERS HAS WON: `sequence comparisons ... have become one of the primary sets of characters used to define and distinguish virus taxa`
lefkowitz2018-virus-taxonomy-the-database-of-the
Classification of viruses is based on the collection and comparison of various characters that describe the virus, and can then be used to distinguish one virus from another ( 1 , 10 – 15 ). Characters can consist of any property or feature of the virus, and include the molecular composition of the genome; the structure of the virus capsid and whether or not it is enveloped; the gene expression pr
the social category (men or women) into which one is categorized—either by others or by oneself
morgenroth2021-gender-trouble-binary
not defined in this paper's own words; loss of photogenerated carriers before they are collected
chen2017-thin-single-crystal-perovskite-solar-cells
Though increased J SC slightly increases V OC , larger thickness of perovskite films increases the charge recombination during their transport and thus J 0 , which reduces V OC .
not defined in this paper's own words; loss of photogenerated charges before collection
sun2018-low-cost-polymer-donor-solar-cells
the thicker PTQ10: IDIC active layers will enhance the light harvest which is beneficial to higher J sc , but it also increases charge recombination which will decrease J sc .
not defined in this paper's own words; validation and penalty-scoring component
bento2020-open-source-chemical-structure-curation
A chemical curation pipeline has been developed using the open source toolkit RDKit. It comprises three components: a Checker to test the validity of chemical structures and flag any serious errors; a Standardizer which formats compounds according to defined rules and conventions and a GetParent component that removes any salts and solvents from the compound to create its parent. This pipeline has
the component that validates structures, flags problems, and assigns severity penalties
bento2020-open-source-chemical-structure-curation
The Checker component validates structures prior to the compounds being loaded into ChEMBL. If an error or problem is detected in the structure a score is reported for the molecule; the score increases with the severity of the perceived problem. In the majority of cases compounds are loaded into the database even if a warning flag is identified. The scores are recorded but at this point errors are
not defined in this paper's own words; database representations subjected to curation
bento2020-open-source-chemical-structure-curation
The ChEMBL database is one of a number of public databases that contain bioactivity data on small molecule compounds curated from diverse sources. Incoming compounds are typically not standardised according to consistent rules. In order to maintain the quality of the final database and to easily compare and integrate data on the same compound from different sources it is necessary for the chemical
not defined in this paper's own words; structural chemical information represented through ChEBI
bateman2020-uniprot-the-universal-protein-know
Expert curation The evaluation of experimental data published in the scientific literature, and summarizing key points of biological relevance in the appropriate reviewed UniProtKB/Swiss-Prot record, is fundamental to the operation of the UniProt database. The functional information extracted from the literature is added both in the form of human readable summaries and via structured vocabularies,
not defined in this paper's own words; handedness of stereocentres, not always respected by predictions
abramson2024-alphafold3
On stereochemistry, we note two main classes of violations. The first is that the model outputs do not always respect chirality (Fig. 5b ), despite the model receiving reference structures with correct chirality as input features. To address this in the PoseBusters benchmark, we included a penalty for chirality violation in our ranking formula for model predictions. Despite this, we still observe
not defined in this paper's own words; handedness signal supplied mainly by FAPE
jumper2021-highly-accurate-protein-structure-prediction-alphafold
The residue gas representation is updated iteratively in two stages (Fig. 3d ). First, a geometry-aware attention operation that we term ‘invariant point attention’ (IPA) is used to update an N res set of neural activations (single representation) without changing the 3D positions, then an equivariant update operation is performed on the residue gas using the updated activations. The IPA augments
Chronic kidney disease (CKD) is defined as “abnormalities of the kidney structure or function, present for more than 3 months, with implications for health” [ 12 ].
mihai2018-inflammation-related-mechanisms-in-chronic-kidney-disease
the morbidity and mortality that can be directly attributed to all stages of CKD
roth2020-global-burden-cardiovascular-diseases
Chronic traumatic encephalopathy (CTE) is a neurodegeneration characterized by the abnormal accumulation of hyperphosphorylated tau protein within the brain.
mckee2015-the-first-ninds-nibib-consensus-meeting-to
not defined in this paper's own words; a brain condition diagnosed post-mortem that the paper links to changes in gray matter after head trauma in sports
gattis2022-maltreatment-in-sports-concept
This may be an important element to further research as post-mortem chronic traumatic encephalopathy (CTE) diagnoses also reflect changes in gray matter associated with head trauma due to sports.
AS DEFINED HERE, BY WHAT IT FAILS TO DO: a wound that does not proceed through the normal phases of healing in an orderly and timely manner. The defining property is a RATE, and no rate is given
frykberg2015-challenges-in-the-treatment-of-chr
Chronic wounds are defined as wounds that fail to proceed through the normal phases of wound healing in an orderly and timely manner.
At the extreme end, chronic wounds – defined as a barrier defect that has not healed in 3 months – have become a major therapeutic challenge throughout the Western world and will only increase as our populations advance in age, and with the increasing incidence of diabetes, obesity and vascular disorders.
martin2015-cellular-and-molecular-mechanisms-of-repair-in
Chronic wounds exhibit such a disrupted repair process where a sustained anatomical and functional result is not reached within an appropriate length of time—usually taken to be three months [ 3 ].
zhao2016-inflammation-in-chronic-wounds
A CLASS THAT IS NOISE AND FUNCTION AT ONCE. `most circRNAs ... are of low abundance and consequently may be by-products in pre-mRNA splicing. However, certain circRNAs ... suggest these species are purposefully produced`. Two senses of one term, in one sentence, separated by an abundance threshold
zheng2016-circular-rna-profiling-reveals-an
Consistent with previous studies of different cell types 11 , 12 , we found that most circRNAs in human normal and cancerous tissues are of low abundance and consequently may be by-products in pre-mRNA splicing. However, certain circRNAs are predominately expressed in one gene locus and present at substantial levels that suggest these species are purposefully produced.
a single-stranded, covalently closed RNA molecule
weiyi2020-circular-rna-metabolism-functions-and-interactions-with
Circular RNAs (CircRNAs) are single-stranded, covalently closed RNA molecules that are ubiquitous across species ranging from viruses to mammals.
not defined in this paper's own words
chen2019-m6a-circnsun2-colorectal-liver-metastasis
In conclusion, we provide the first line of comprehensive evidence that circNSUN2 is an important oncogenic circRNA as well as a diagnostic/prognostic biomarker for CRCs with LM.
the CD response of a chiral sample: difference in transmitted power between right- and left-handed circularly polarized light
zhao2017-twisted-metamaterials-chirality-detection
The CD response of a chiral sample is defined as the difference in transmitted power between right- and left-handed circularly polarized light, normalized to the total transmitted power for the two circularly polarized excitations.
the difference in transmitted power between right- and left-handed circularly polarized light
zhao2017-twisted-metamaterials-chirality-detection
To date, molecular chirality is routinely determined using circular dichroism (CD) measurements 5 , 6 .
not defined in this paper's own words; closed RNA products inferred for hundreds of genes
salzman2012-circular-rnas-are-the-predominant
Most human pre-mRNAs are spliced into linear molecules that retain the exon order defined by the genomic sequence. By deep sequencing of RNA from a variety of normal and malignant human cells, we found RNA transcripts from many human genes in which the exons were arranged in a non-canonical order. Statistical estimates and biochemical assays provided strong evidence that a substantial fraction of
not defined in this paper's own words; covalently closed RNA molecules produced by a donor joining an upstream acceptor - the same observation, renamed and shown to be physically real
salzman2012-circular-rnas-are-the-predominant
First, the size selection step during sequencing library preparation would miss small circular RNAs, or highly structured circular RNAs with fragmentation kinetics incompatible with our size selection.
Circular RNA molecules contain exons from coding or noncoding transcripts spliced in an unconventional order – a downstream splice donor spliced to an upstream splice acceptor site.
wang2014-circular-rna-is-expressed-across-the-eukaryotic
not defined in this paper's own words; noncanonical splicing mechanism under investigation
salzman2012-circular-rnas-are-the-predominant
What is the molecular mechanism of circular splicing? Recent evidence suggests that canonical pre-mRNA splicing does not necessarily proceed in sequential order from the 5′ to 3′ end of the RNA [24] . In this case, an orphan 3′ splice site upstream of the acceptor exon could serve as the acceptor site for a downstream 5′ splice site that is not paired with its canonical splicing acceptor, producin
We named it circRNA sponge for miR-7 (ciRS-7), as it contains >70 conserved binding sites for miR-7.
kristensen2017-circular-rnas-in-cancer-opportunities-and-challenges
not defined in this paper's own words; a circRNA with more than 70 miR-7 binding sites, identified as a miRNA inhibitor; also called CDR1as
zheng2016-circular-rna-profiling-reveals-an
Specifically, the circRNA ciRS-7 (also termed CDR1as), which harbours more than 70 conventional miR-7-binding sites, has been identified as a miRNA inhibitor.
a higher citation rate associated with openly accessible articles or shared research resources
munafò2016-open-science-researchers-succeed
While some controlled studies have failed to find a difference in citations between OA and non-OA articles or attribute differences to factors other than access ( Davis, 2011 ; Davis et al., 2008 ; Frandsen, 2009a ; Gaulé and Maystre, 2011 ; Lansingh and Carter, 2009 ), a larger number of studies confirm the OA citation advantage.
not defined in this paper's own words; higher citation rates associated with access or resource sharing
munafò2016-open-science-researchers-succeed
Data sharing also confers a citation advantage.
not defined in this paper's own words; record collection by non-professionals, cheap for certain taxa
meyer2015-global-priorities-biodiversity-distributions
In addition, novel approaches such as citizen science projects are already providing increasingly valuable records for certain taxa at comparatively low cost 46 .
not defined in this paper's own words; the organisational form of the study: volunteers from a public website doing the coding
cook2013-climate-consensus
This letter was conceived as a ‘citizen science’ project by volunteers contributing to the Skeptical Science website
A renewed interest in the use of psychedelics for treating obsessive compulsive disorder (OCD) has emerged in the last 20 years. But pre-clinical and clinical evidence remain scarce, and little is known about the factor determining the magnitude and persistence of the therapeutic effect.
Buot2023-improvement-in-ocd-symptoms-associated-with
not defined in this paper's own words; serotonergic hallucinogens acting at 5-HT2A; the category that carries the result
Buot2023-improvement-in-ocd-symptoms-associated-with
As shown in Table 3 , the most used substance categories among our OCD population were classic psychedelics (84%), entactogens (72%) and ketamine (49%); whereas NPS, delirogens and ibogaine were used by 22%, 16% and 2% of the participants, respectively.
a supervised learning task of inferring a function from labeled training data
parmar2015-machine-learning-radiomic-biomarkers
not defined in this paper's own words; the placement of organisms into taxa, which the names then label
meier-kolthoff2022-tygs-and-lpsn-a-database-tandem-fo
Comments on taxonomic terminology were added to LPSN for single taxon names where appropriate, as well as comments about the conditions under which a name would be regarded as the correct name if it is not currently so regarded by LPSN. The latter change is supposed to improve the understanding of the difference between nomenclature and classification, which may puzzle many microbiologists ( 35 ).
not defined in this paper's own words; correctness traded against table size and throughput
wood2019-improved-metagenomic-analysis-kraken-2
Kraken 2’s approach is faster than Kraken 1’s because only distinct minimizers from the query (read) trigger accesses to the hash table. A similar minimizer-based approach has proven useful in accelerating read alignment [ 16 ]. Kraken 2 additionally provides a hash-based subsampling approach that reduces the set of minimizer/LCA pairs included in the table, allowing the user to specify a target h
not defined in this paper's own words; percentage of station reference classes correctly mapped
beck2018-koppen-geiger-climate-classification-maps
We validated the new high-resolution present-day Köppen-Geiger classification ( Fig. 1a ), and previous maps from Kottek et al. 20 , Peel et al. 21 , and Kriticos et al. 22 , by calculating the classification accuracy (defined as the percentage of correct classes) using station observations as reference. An initial database was compiled from the Global Historical Climatology Network-Daily (GHCN-D)
not defined in this paper's own words; hierarchical chemical classifier
sorokina2021-coconut-open-natural-products
Each unique NP is then assigned a unique identifier, composed of the “CNP” prefix and 7 digits. An automatic curation for NP metadata is performed, comprising the retrieval of its official name, synonyms, cross-references to other major chemical databases. Then, a range of molecular properties, descriptors and fingerprints (full list in Table 2 ) are computed using the in-build CDK [ 13 ] librarie
not defined in this paper's own words; the software that assigns ChemOnt categories to a structure automatically
djoumbou-feunang2016-classyfire-automated-chemical-clas
Overall, ClassyFire was able to reproduce ~94% of the ChEBI annotations, but also to suggest new terms that could accurately increase the number of annotations by another 43.6%.
Causal loop diagramming
angelstam2013-transdisciplinary-research-definition
causal loop diagram
mavrommati2014-lake-socioeconomic-coupling
not defined in this paper's own words; impact category grouping temperature, acidification, and ultraviolet radiation
selig2014-global-priorities-marine-biodiversity-conservation
We used a 10% area threshold for impact values for two reasons: 1) preliminary analyses indicated a 5% area threshold to be too restrictive in terms of the area that would have potential overlap with the top 5% of EEZ or ABNJ area by richness, range rarity, or proportional range rarity, and thus was not informative, and 2) management interventions can address a broader degree of impact levels rath
not defined in this paper's own words; regional precipitation and temperature regime
jing2015-ecosystem-multifunctionality-biodiversity-climate
For example, climate directly influences ecosystem function by accelerating the activity and interactions among consumers, detritivores, decomposers and microbes 12 23 24 , and it indirectly affects ecosystem function by altering the composition of communities 16 .
not defined in this paper's own words; the major large-scale driver of global vegetation distribution
beck2018-koppen-geiger-climate-classification-maps
The Köppen-Geiger system classifies climate into five main classes and 30 sub-types. The classification is based on threshold values and seasonality of monthly air temperature and precipitation. Considering vegetation as “crystallized, visible climate” 1 , this classification aims to empirically map biome distributions around the world: different regions in a similar class share common vegetation
fast-feedback only: the standard ~3°C figure, counting water vapour, clouds, aerosols and sea ice
hansen2013-climate-change
However, this climate sensitivity includes only the effects of fast feedbacks of the climate system, such as water vapor, clouds, aerosols, and sea ice.
including slow feedbacks: larger, quantified from paleoclimate rather than models, and the reason this paper's limit is far below the usual one
hansen2013-climate-change
Paleoclimate data also provide quantitative information about how nominally slow feedback processes amplify climate sensitivity [51] – [52] , [54] – [56] , which also is important to our analyses.
not defined in this paper's own words; interannual fluctuation of climate
burrell2020-drylands-desertification-climate-change
We then attributed this change to CO 2 , climate variability (CV), CC, and LU using a modified version of the Time Series Segmented Residual Trends (TSS-RESTREND) method
not defined in this paper's own words; year-to-year variation in growing-season and annual temperature and precipitation
ray2015-climate-variation-crop-yield
Globally, climate variability accounts for roughly a third (~32–39%) of the observed yield variability.
bilinear interpolation of coarse temporal anomalies onto high-resolution climatology
abatzoglou2018-terraclimate-high-resolution-global-dataset
Climatologically aided interpolation was used to superimpose monthly climate anomalies from CRU Ts4.0 and JRA-55 with monthly climate normals from WorldClim to estimate monthly time series from 1958–2015. Climatologically aided interpolation is a simple spatial downscaling approach that employs bilinear interpolation of temporal anomalies from a higher-temporal, lower-spatial resolution dataset to
not defined in this paper's own words; downscaling of temporal anomalies onto high-resolution normals
abatzoglou2018-terraclimate-high-resolution-global-dataset
We present TerraClimate, a dataset of high-spatial resolution (1/24°, ~4-km) monthly climate and climatic water balance for global terrestrial surfaces from 1958–2015. TerraClimate uses climatically aided interpolation, combining high-spatial resolution climatological normals from the WorldClim dataset, with coarser resolution time varying (i.e., monthly) data from other sources to produce a month
not defined in this paper's own words; a potential but untested downstream application
kung2023-chatgpt-usmle-medical-education
We evaluated the performance of a large language model called ChatGPT on the United States Medical Licensing Exam (USMLE), which consists of three exams: Step 1, Step 2CK, and Step 3. ChatGPT performed at or near the passing threshold for all three exams without any specialized training or reinforcement. Additionally, ChatGPT demonstrated a high level of concordance and insight in its explanations
not defined in this paper's own words; clinician judgment and responsibility in patient care
lysaght2019-ai-assisted-decision-making-healthcare
Indeed, AI may allow doctors to spend more time having personal discussions with patients while leaving time-consuming statistical calculations and predictions to the CDSS. Spending more time to provide better care enhances patient trust, which is foundational to the relationship between medical practitioners and patients. However, practitioners also need to take care that the AI-assisted CDSS doe
holistic and comprehensive thinking that can solve the diverse and complex health problems of patients
oh2022-nurses-clinical-decision-making
not defined in this paper's own words; reasoning over biomedical and management questions tested by USMLE
kung2023-chatgpt-usmle-medical-education
In this study, we evaluate the performance of ChatGPT, a non-domain specific LLM, on its ability to perform clinical reasoning by testing its performance on questions from the United States Medical Licensing Examination (USMLE). The USMLE is a high-stakes, comprehensive three-step standardized testing program covering all topics in physicians’ fund of knowledge, spanning basic science, clinical re
birth-weight shifts inside the normal range judged of little or no clinical importance
steenland2010-pfoa-health-effects
Although an adverse impact of PFOA on birth weight would be of some concern in suggesting sensitivity of the fetus, shifts of the reported magnitudes within the normal birth weight range are of little or no clinical significance.
not defined in this paper's own words; clinical interpretation dimension assigned when known
bateman2020-uniprot-the-universal-protein-know
To further ensure our data is both human-readable and also computationally-tractable and continues to adhere to the FAIR principles ( 2 ), we are working to standardize the representation of all existing UniProt data on the functional impact of human variation. UniProtKB/Swiss-Prot has curated over 81 000 variants in 13,000 human protein sequence records from peer-reviewed literature, annotated wi
a property of a reference database: each reference sequence defines and labels one
callahan2017-exact-sequence-variants-should-rep
Closed-reference OTUs are properties of a reference database; each reference sequence in the database defines and labels an associated closed-reference OTU.
not defined in this paper's own words; a label owned by a reference database, observable without its own representative sequence ever being observed
callahan2017-exact-sequence-variants-should-rep
The observation of a closed-reference OTU indicates that at least one sequencing read was sufficiently similar to the associated reference sequence to be mapped to its OTU. However, it does not guarantee that the reference sequence itself was observed—to the contrary, that is often not the case.
calculate the mean of competing values and select the observed value nearest that mean
sorkun2019-aqsoldb-aqueous-solubility-descriptors
In this method, the mean value is first calculated then the closest value to mean value among the candidates is selected.
not defined in this paper's own words; selection of the observed value nearest the mean of competing values
sorkun2019-aqsoldb-aqueous-solubility-descriptors
Next, for compounds with occurrence count >1 with different solubility values (819), we used the closest to the mean algorithm to select the value.
not defined in this paper's own words; completion-based contextual probability
nieuwland2018-limit-probabilistic-prediction
This expectation was operationalized as a word’s cloze probability (cloze), calculated in a separate, non-speeded sentence completion task as the percentage of continuations of a sentence fragment with that word ( Taylor, 1953 ).
the proportion of sentence-completion responses supplying a particular continuation
nieuwland2018-limit-probabilistic-prediction
Nieuwland requested all original materials from DeLong et al., including the questions and norms, with the stated purpose of direct replication (personal communication, November 4 and 19, 2015), upon which DeLong et al. made available the 80 sentences described in the original study. These sentences were then adapted from American to British spelling and underwent a few minor changes to ensure the
Coupled Model Intercomparison Project Phase 5
tabari2020-climate-flood-extreme-precipitation
Coupled Model Intercomparison Project version 5
pendergrass2017-precipitation-variability-warmer-climate
covariance-matched permutation test
michaels2016-neural-population-dynamical-system
reassigning task conditions within individual neurons while keeping the covariance matrix between neurons above 95% similarity
michaels2016-neural-population-dynamical-system
In order to test if the underlying condition structure was uniquely responsible for the observed rotations, the CMPT consisted of reassigning task conditions within individual neurons while maintaining the overall covariance matrix between all neurons to a reasonable threshold (95% similarity; Methods).
chronic neurological conditions
mckenna2022-resilience-family-caregivers
the four groups CNCs are typically divided into by origin and aetiology: sudden-onset, intermittent, progressive, and stable
mckenna2022-resilience-family-caregivers
Depending on their origin and aetiology, CNCs are typically divided into four groups: (1) sudden‐onset conditions (e.g., acquired brain injury [ABI], spinal cord injury [SCI], traumatic brain injury [TBI]); (2) intermittent conditions (e.g., epilepsy); (3) progressive conditions (e.g., dementia, multiple sclerosis [MS], Parkinson's disease [PD], motor neuron disease [MND] and other neurodegenerati
not defined in this paper's own words; central nucleus of the inferior colliculus — tonotopic, sharply tuned, and largely unaffected here
Blackwell2020-auditory-cortex-shapes-sound-responses-in-th
Therefore, opsin was expressed exclusively in AC-IC projecting neurons, which terminate across all regions of IC, including central nucleus (CNIC) and dorsal cortex of IC (DCIC), from which we recorded ( Figure 1D ).
not defined in this paper's own words; the central nucleus, which the paper CANNOT EXCLUDE having imaged into
Wong2019-tonotopic-and-non-auditory-organization-of-t
The IC is usually divided into three main regions: the central nucleus (CNIC), the lateral cortex (LCIC), and the dorsal cortex (DCIC; Oliver, 2005 ).
not defined in this paper's own words; short name for convolutional neural networks
mcquin2018-cellprofiler-next-generation-image
Convolutional neural networks (CNNs) are a type of deep learning model that transforms input images into outputs specified by the problem type [ 16 ]. For instance, image classification models transform images into categorical labels [ 17 ], while image segmentation models transform images into segmentation masks [ 18 ]. CNNs are now widely used to solve many computer vision tasks, given their abi
not defined in this paper's own words; the family with automatic feature learning and transformation invariance, and a dependence on labelled data the others do not have
voulodimos2018-deep-learning-for-computer-vision
However, each category has distinct advantages and disadvantages. CNNs have the unique capability of feature learning, that is, of automatically learning features based on the given dataset. CNNs are also invariant to transformations, which is a great asset for certain computer vision applications. On the other hand, they heavily rely on the existence of labelled data, in contrast to DBNs/DBMs and
not defined in this paper's own words; enhanced plant growth from rising atmospheric CO2
burrell2020-drylands-desertification-climate-change
Figure 1b shows that globally, CO 2 fertilization was the largest absolute attributed driver of dryland vegetation change in 44.1% of areas, followed by LU (28.2%), CV (14.6%), and then CC (13.1%).
not defined in this paper's own words; terrestrial-biosphere uptake response represented in the Bern model
hansen2013-climate-change
We use the dynamic-sink pulse-response function version of the well-tested Bern carbon cycle model [169] , as described elsewhere [54] , [170] . Specifically, we solve equations 3–6, 16–17, A.2.2, and A.3 of Joos et al. [169] using the same parameters and assumptions therein, except that initial (1850) atmospheric CO 2 is assumed to be 285.2 ppm [167] . Historical fossil fuel CO 2 emissions are fr
The most common definition in this cluster was Ostrom, 37 who provided an initial, broad definition that established the core concept of how individuals outside of a service‐providing organization contribute to the delivery of that service.
masterson2022-mapping-definitions-of-co-production-and-co
an exploratory social space that may challenge conventional framings of engagement, involvement, and voluntarism
filipe2017-co-production-knowledge-values
not defined in this paper's own words; collaborative quality practice
harris2020-array-programming-numpy
To complement this facility for exploratory work and rapid prototyping, NumPy has developed a culture of using time-tested software engineering practices to improve collaboration and reduce error 30 . This culture is not only adopted by leaders in the project but also enthusiastically taught to newcomers. The NumPy team was early to adopt distributed revision control and code review to improve col
not defined in this paper's own words; the broader practice of which pair programming is an extreme form
wilson2014-best-practices-scientific-computing
An extreme form of code review is pair programming , in which two developers sit together while writing code. One (the driver) actually writes the code; the other (the navigator) provides real-time feedback and is free to track larger issues of design and consistency. Several studies have found that pair programming improves productivity [67] , but many programmers find it intrusive. We therefore
not defined in this paper's own words; maintainer assessment required before merging core changes
astropycollaboration2018-building-open-science-project
Code is contributed to the astropy core package or modified through “pull requests” (via GitHub ) that often contain several git commits. Pull requests may fix bugs, implement new features, or improve or modify the infrastructure that supports the development and maintenance of the package. Individual pull requests are generally limited to a single conceptual addition or modification, to make code
not defined in this paper's own words; ethical concern about incentive pressure
vlaev2019-financial-incentives-health-behavior
Motivating behavior change in health is much more complex than can be accomplished with a single strategy and offering incentives (both positive and negative) are just one route to achieving improvements in health outcomes. Financial incentives are increasingly seen as an important vehicle to bring about changes in behavior that lead to healthier lifestyles and supporters and critics alike can be
not defined in this paper's own words; ethical concern that nudges manipulate decision processes
petrescu2016-public-acceptability-nudging-obesity
Concerns regarding nudge interventions have focused on the non-conscious processes that likely mediate their impact [ 10 , 11 , 15 ]. As detailed earlier, ethicists as well as others, have argued that nudges manipulate decision-making processes, and may therefore be coercive. White [ 11 ] states “… and , to make matters worse , the coercion operates through the very cognitive biases that behaviora
a history of reciprocal selection between parties
moran2015-hologenome-helpful-hollow
not defined in this paper's own words; reciprocal evolutionary change within host-microbe systems
berg2020-microbiome-definition-re-visited-o
Historically, the field of microbiome research has emerged from environmental microbiome research (microbial ecology) and provides an interdisciplinary platform for many fields, e.g., agriculture, food science, biotechnology, bioeconomy, mathematics (informatics, statistics, modeling), plant pathology, and especially human medicine. The new field has already delivered novel and important concepts
not defined in this paper's own words; study of cognitive ecology through material evidence
malafouris2021-mark-making-human-becoming
Trying to highlight those problems and attempting to overcome them, I will suggest a different approach to the study of mark making and its relation to thinking based on the concept of enactive signification. My approach is rooted in cognitive archaeology which can be described as the field of research that specializes in studying the cognitive ecology of human becoming (past and present). In part
the macro-history of thinking across changing brain-body-material configurations
malafouris2018-mind-material-engagement
Cognitive archaeology (which is the field that examines the macro-history of human thinking: how it becomes constituted, transformed and reproduced in different contexts and configurations of brain-body-material environment in the course of human becoming) offers plenty of evidence to support this basic claim against the separation of thinking inside the head and acting inside the world. 3 Perhaps
not defined in this paper's own words; regulation component of executive function
thomas2018-educational-neuroscience-progress-prospects
While branches of educational neuroscience address cognitive skills relevant to particular academic domains, there is also work that considers cognitive processes that impact all domains. Perhaps the most studied are ‘executive functions’, a set of related processes involving cognitive control and flexibility (Diamond, 2013 ). Executive function skills are strongly predictive of academic achieveme
not defined in this paper's own words; task control modulated by reward motivation
ng2018-growth-mindset-intrinsic-motivation
Neuroscientific evidence has shown that ACC is associated to cognitive control and motivation [ 31 ]. Neural correlates revealed that dopamine is critical for motivation and cognitive control, with motivation-cognition interactions between midbrain regions and lateral frontal cortex [ 33 ]. Cognitive control is influenced by reward motivation. Participants were assigned to three levels of cognitiv
not defined in this paper's own words; HE outcome correlated with bacterial families
rinninella2019-what-is-the-healthy-gut-microbiota
Hepatic encephalopathy (HE) is a complication of cirrhosis and is defined as a spectrum of neuropsychiatric abnormalities in patients with liver dysfunctions. Bajaj et al. \ [103\] linked the gut microbiota composition with cognition and inflammation in HE. Fecal microbiota of cirrhotics were significantly higher in _Enterobacteriaceae_, _Alcaligenaceae_, and _Fusobacteriaceae_ and lower in _Rumin
not defined in this paper's own words; a lasting loss of cognitive ability
varpaei2024-postoperative-cognitive-dysfunction
Post-operative cognitive dysfunction (POCD) is a specific cognitive impairment that involves functional impairment of the nervous system’s activities, such as selective attention, vigilance, perception, learning, memory, executive function, verbal and language abilities, emotion, visuospatial, and visuomotor abilities.
a performance-based measure of individuals’ tendency to reconsider their initial intuitions
hannikainen2019-determinism-moral-responsibility
three items contrasting intuitive but incorrect answers with reflective correct answers
bosch2019-online-panels-social-science-research
The CRT consists of three questions that measure the tendency to provide an intuitively compelling but incorrect response over a reflective but correct response (Frederick, 2005 ).
ensures that the concept is internally consistent and free from contradictions
deppe2024-cognitive-warfare-concept
not defined in this paper's own words; sense making as one determinant of embedding complex interventions
nilsen2015-implementation-theories-models-frameworks
The theory identifies four determinants of embedding (i.e. normalizing) complex interventions in practice (coherence or sense making, cognitive participation or engagement, collective action and reflexive monitoring) and the relationships between these determinants [ 123 ].
not defined in this paper's own words
breslauer2023-stability-political-physical-science
Cooperativity is a term that can refer both to macroscopic phenomena, up to and including human behavior (“collective action”), and to microscopic/molecular-scale phenomena. The term can be used to refer to the coalescence of the many degrees of freedom of a large group of people, or to a chemical macromolecule, when either entity abruptly changes states in a rapid, coordinated, concerted, manner,
not defined in this paper's own words; one determinant of embedding complex interventions in practice
nilsen2015-implementation-theories-models-frameworks
The theory identifies four determinants of embedding (i.e. normalizing) complex interventions in practice (coherence or sense making, cognitive participation or engagement, collective action and reflexive monitoring) and the relationships between these determinants [ 123 ].
according to Young, is a forward-looking responsibility that manifests through actions that are intent on changing interrelated institutions and processes to make them more just
wesp2019-intersectionality-transgender-health
not defined in this paper's own words; brief visibility window around peak topic traffic
wu2015-production-information-attention-economy
In addition to uncovering for the first time a previously unobserved link between collective attention and production of new information, we also find that new articles created shortly before or after the peak of traffic to their related pages tend to garner more views than those created too early or too late. Collective attention concentrates only for a brief period of time — a span of about ±3 d
the short interval around a traffic peak in which new related content attracts more visits
wu2015-production-information-attention-economy
Collective attention span. New articles tend to receive substantially more traffic if created within three days before or after the peak of traffic to their neighboring pages.
not defined in this paper's own words; correlated covariates destabilising fixed effects
vos2020-global-burden-369-diseases
The major limitation of the GBD analysis of the burden of diseases and injuries is the availability of primary data. Where data are not available, the results depend on the out-of-sample predictive validity of the modelling efforts. While improvements to data processing and modelling can lead to incremental improvements in the accuracy of our estimates, fundamental improvements require more and be
not defined in this paper's own words; predictors explaining overlapping response variance
harrison2018-mixed-effects-modelling-ecology
With the desired set of predictors identified, it is wise to check for collinearity among predictor variables. Collinearity among predictors can cause several problems in model interpretation because those predictors explain some of the same variance in the response variable, and their effects cannot be estimated independently ( Quinn & Keough, 2002 ; Graham, 2003 ): First, it can cause model conv
an observable contribution to collective online debate
bessi2016-user-polarization-facebook-youtube
We start our analysis by focusing on the statistical signatures of content consumption on Facebook and Youtube videos. The focus is on all videos posted by conspiracy-like and scientific pages on Facebook. We compare the consumption patterns of the same video on both Facebook and Youtube. On Facebook a like stands for a positive feedback to the post; a share expresses the will to increase the visi
not defined in this paper's own words; an interaction through which collective debate forms
bessi2015-science-conspiracy-misinformation
In the analysis, we account for user interaction with respect to pages public posts—i.e. likes, shares, and comments. Each of these actions has a particular meaning [ 48 – 50 ]. A like stands for a positive feedback to the post; a share expresses the will to increase the visibility of a given information; and comment is the way in which online collective debates take form around the topic promoted
not defined in this paper's own words; convenient but often costly, inflexible, and proprietary image-analysis tools
mcquin2018-cellprofiler-next-generation-image
Racing to keep up with the advancement of automated microscopy are several classes of biologist-focused image analysis software, such as companion packages bundled with imaging instruments (e.g., MetaMorph—Molecular Devices, Elements—Nikon), stand-alone commercial image processing tools (e.g., Imaris—Bitplane), and free open-source packages (e.g., ImageJ/Fiji, CellProfiler, Icy, KNIME). Commercial
not defined in this paper's own words; proprietary packages developed chiefly for pharmaceutical screening
carpenter2006-cellprofiler
Commercial software has also been developed, mainly for the pharmaceutical screening market, by companies including Cellomics, TTP LabTech, Evotec, Molecular Devices, and GE Healthcare [ 24 ]. Development of these packages has been guided mainly by mammalian cell types and cellular features of pharmaceutical interest, including protein translocation, micronucleus formation, neurite outgrowth, and
measured through we-talk, the use of first-person plural pronouns
falconier2019-dyadic-coping-couples
Such studies (e.g., Rohrbaugh et al., 2012 ) have typically used the Linguistic Inquiry Word Count program (Pennebaker et al., 2007 ) to count partners‘use of first-person plural pronouns in couple conversations (e.g., transcripts of marital interaction tasks or intervention sessions) such as we, us , or our , also referred to as we -talk.
when one or more individuals perceive a stressor as ‘our’ problem
falconier2019-dyadic-coping-couples
not defined in this paper's own words; community level of mechanism operation
lewis2018-classification-causality-implementation-mechanisms
Once specified, an implementation strategy needs to be linked to the mechanisms hypothesized to underlie its functioning. Mechanisms explain how an implementation strategy has an effect by describing the actions that lead from the administration of the strategy to the implementation outcomes (see Table 1 for definitions). Statistically speaking, mechanisms are always mediators, but mediators may n
not defined in this paper's own words; densely connected actant group
tangherlini2020-conspiracy-narrative-frameworks-web
Intuitively, a community in a network is a set of nodes that are more “densely” connected within the set than with nodes outside of that set. Given the nature of the inter-actant relationship network, such communities correspond to the subdomains of interaction. Partitioning any given network into an optimal number of clusters or communities is a well-known problem in graph theory that is computat
We study the stability of a community matrix M , modelling a continuous-time, dynamical ecological system
grilli2016-ecological-modularity
not defined in this paper's own words; the matrix of pairwise effects at equilibrium, built as an element-wise product of interaction strengths and an adjacency matrix
grilli2016-ecological-modularity
M is obtained by multiplying element-by-element two matrices, a matrix of interaction strengths, W , where W ij expresses the effect of species j on species i around equilibrium, and the adjacency matrix of an undirected graph, K . The community matrix is therefore M = W ○ K ( Fig. 1 ).
a fixed array of 32-bit cells storing compact hash-code and taxonomy-value pairs
wood2019-improved-metagenomic-analysis-kraken-2
The hash table used by Kraken 2 to store minimizer/LCA key-value pairs is very similar to a traditional hash table that would use linear probing for collision resolution, with some modifications. Kraken 2’s compact hash table (CHT) uses a fixed-size array of 32-bit hash cells to store key-value pairs. Within a cell, the number of bits used to store the value of the key-value pair will vary dependi
not defined in this paper's own words; probabilistic store mapping minimizers to LCAs
wood2019-improved-metagenomic-analysis-kraken-2
Kraken 2 addresses the issue of large memory requirements through two changes to Kraken 1’s data structures and algorithms. While Kraken 1 used a sorted list of k -mer/LCA pairs indexed by minimizers [ 15 ], Kraken 2 introduces a probabilistic, compact hash table to map minimizers to LCAs. This table uses one third of the memory of a standard hash table, at the cost of some specificity and accurac
arises from prolonged empathy and assistance to others, resulting in emotional numbness due to the negative emotions of those being helped
cao2024-change-fatigue-nurses
the physical and psychological depletion arising when helpers are repeatedly exposed to the suffering of others and invest in compassionate responses
wu2026-digital-compassion-fatigue-nurses
Contrast gain control was measured as percentage compensation in response to a doubling of contrast, where complete (100%) compensation is defined as a halving of gain, and no compensation is defined as no change in gain:
Lohse2020-neural-circuits-underlying-auditory-contrast
The other aspects of camouflaging centre around developing explicit strategies to meet the social and communication gaps resulting from an individual’s ASC, which we call compensation.
hull2017-social-camouflaging-autism
These camouflaging techniques include specific non-verbal communication strategies and guidelines for successful conversations with others.
not defined in this paper's own words; the proposed alternative: going online is a reaction to a negative life situation, facilitated by an application, not a compulsion
kardefeltwinther2014-critique-internet-addiction-research
The basic tenet of the theory of compensatory internet use is that the locus of the problem is a reaction by the individual to his negative life situation, facilitated by an internet application.
the compensatory model stated as a proposal about negative life situations giving rise to a motivation
kardefeltwinther2014-critique-internet-addiction-research
This paper proposes a theory of compensatory internet use where negative life situations can give rise to a motivation to go online to alleviate negative feelings.
not defined in this paper's own words
tupper2020-healthy-publics-movement-volunteering
GoodGym’s practice of running in a mixed ability group, thus, facilitated different experiences through a culture of running characterised by togetherness rather than competition.
not defined in this paper's own words; negative interaction that may coexist with cross-trophic benefit
berg2020-microbiome-definition-re-visited-o
Microbes interact with one another, and these symbiotic interactions have diverse consequences for microbial fitness, population dynamics, and functional capacities within the microbiome [ 62 ]. These interactions can either be between microorganisms of the same species or between different species, genera, families, and domains of life. The interactive patterns within these webs may be positive (
a proportion of expected species richness, which depends on the spatial grain chosen
meyer2015-global-priorities-biodiversity-distributions
Such coarse grains are not adequate for most questions in ecology 35 and, with land-use and conservation actions typically set at the kilometer scale or finer, are unsuited for effective resource management.
percentage of expected richness documented with point records
meyer2015-global-priorities-biodiversity-distributions
We conceptualize them as complex decision-making processes.
Bernal2022-top-down-modulation-impairs-priming-suscepti
not defined in this paper's own words; the paper's frame, and it is chosen to make the laboratory task and the election commensurable - a choice with social consequences rather than a preference judgment
Bernal2022-top-down-modulation-impairs-priming-suscepti
The familiarity and trust to each candidate explained the voting-probability for most of them, as well as correlated with their frequency of mentions in the news, their positive associations, and election results. Our results suggest complex decision-making is susceptible to priming, depending on top-down modulation
GFA achieves this, by learning latent variables, also known as components, that are shared between two or more datasets.
kibble2020-integrative-machine-learning-obesity-twins
not defined in this paper's own words; what a concept is defined by, and what it borrows from other concepts - `bits` originating elsewhere
jabareen2009-building-conceptual-framework-philosophy-definitions
2. Every concept has a history. 3. Every concept usually contains “bits” or components originating from other concepts. 4. All concepts relate back to other concepts. 5. A concept is always created by something (and cannot be created from nothing).
not defined in this paper's own words; an index built from several component measures
vos2020-global-burden-369-diseases
The Socio-demographic Index (SDI) is a composite indicator of a country's lag-distributed income per capita, average years of schooling, and the fertility rate in females under the age of 25 years ( appendix 1 section 6 ). 13 For changes over time, we present annualised rates of change as the difference in the natural log of the values at the start and end of the time interval divided by the numbe
not defined in this paper's own words; an index combining several component measures
ferrari2024-global-burden-371-diseases
Sociodemographic development has been a leading contributor to health gains over the three decades for which GBD has previously tracked changes in burden by location. 21 In this Article, we also present an analysis of burden for locations across SDI quintiles. SDI is a composite indicator representing the geometric mean of three parameters: the lag-distributed income per capita, average years of s
not defined in this paper's own words; resource class instantiated by UniProt
wilkinson2016-fair-guiding-principles-data-stewardship
UniProt 26 : UniProt is a comprehensive resource for protein sequence and annotation data. All entries are uniquely identified by a stable URL, that provides access to the record in a variety of formats including a web page, plain-text, and RDF (‘F’ and ‘A’). The record contains rich metadata (‘F’) that is both human-readable (HTML) and machine-readable (text and RDF), where the RDF formatted resp
not defined in this paper's own words; resource that systematically defines and organizes phenotypes
kohler2020-the-human-phenotype-ontology-in-2021
The Human Phenotype Ontology (HPO) is a comprehensive resource that systematically defines and logically organizes human phenotypes. As an ontology, HPO enables computational inference and sophisticated algorithms that support combined genomic and phenotypic analyses. Broad clinical, translational and research applications using the HPO include genomic interpretation for diagnostics, gene-disease
not defined in this paper's own words in this sentence
ge2021-agent-based-global-food-trade
One of the common methods to derive numerical solutions is computable general equilibrium (CGE), which is used in models such as global trade analysis project (GTAP) [ 10 ].
not defined in this paper's own words; a model of the world economy balancing supply and demand under flexible prices
zabel2019-cropland-expansion-markets-biodiversity
CGE models solve for balance between supply and demand with flexible prices.
not defined in this paper's own words; software-based methods capable of introducing consequential errors
wilson2014-best-practices-scientific-computing
We believe that software is just another kind of experimental apparatus [3] and should be built, checked, and used as carefully as any physical apparatus. However, while most scientists are careful to validate their laboratory and field equipment, most do not know how reliable their software is [4] , [5] . This can lead to serious errors impacting the central conclusions of published research [6]
not defined in this paper's own words; algorithms that compute statistical estimates by simulation or numerics
sunnaker2013-approximate-bayesian-computation
Approximate Bayesian computation (ABC) constitutes a class of computational methods rooted in Bayesian statistics .
a computerized procedure to provide a second objective opinion for the assistance of medical image interpretation and diagnosis
cheng2016-computer-aided-diagnosis-deep-learning-breast
not defined in this paper's own words; software that supports clinicians' diagnostic decisions
tiulpin2018-knee-osteoarthritis-deep-learning
However, we believe that a computer-aided diagnosis (CADx) could be used as an objective tool to support clinicians in their decision.
developing, using, and justifying a mathematically intractable model with a computer
farisco2018-large-scale-brain-simulation-and-disorders-o
Broadly, computer simulation can be equated to the entire process of developing, using and justifying a model that involves mathematics that is not analytically tractable ( Frigg and Reiss, 2009 ).
not defined in this paper's own words; computer-based development and use of analytically intractable mathematical models
farisco2018-large-scale-brain-simulation-and-disorders-o
Very briefly, large-scale brain simulations can be described as a subclass of computer simulation.
deeply rooted in public opinion as the core reason for obesity
camacho2017-calorie-concept-obesity
This concept is deeply rooted in public opinion as the core reason for overweight and obesity.
not defined in this paper's own words; the paper's label for the calorie-balance account of obesity
camacho2017-calorie-concept-obesity
The energy balance will be referred to as ‘concept 1’ in this article.
harder for people to understand than concept 1
camacho2017-calorie-concept-obesity
For example, people may find it harder to understand concept 2 rather than concept 1. Hence, educating people in concept 2 may be challenging.
not defined in this paper's own words; the paper's label for its hormone-centred account of obesity
camacho2017-calorie-concept-obesity
This can be seen as a hormonal-balance concept, and it will here be referred to as concept 2.
a mixed-method procedure for engaging stakeholder groups in a structured conceptualization process
waltz2015-concept-mapping-implementation
not defined in this paper's own words; the next-stage method for deriving strategy categories
powell2015-refined-compilation-implementation-strategies-eric
The subsequent stages of the ERIC project [ 9 ] will further enhance the utility of this compilation in a number of ways. First, expert panelists will complete concept mapping [ 43 ] and rating exercises to derive conceptually distinct categories of strategies, interrelationships between them, and a rating for each discrete strategy’s importance and feasibility. This information will help users se
a synthetic frame where different concepts that appear relevant to answer the research questions are presented and interrelated with each other
gomez-virseda2019-relational-autonomy-end-of-life
a synthetic framework in which different concepts deemed relevant to answer the research questions are presented
sanchini2022-vulnerability-aged-care
not defined in this paper's own words; basic organization supplied by a framework
lewis2018-classification-causality-implementation-mechanisms
The National Academy of Science defines “science” as “the use of evidence to construct testable explanations and predictions of natural phenomena, as well as the knowledge generated through this process.” ( 8 ) The field of implementation has spent the past two decades building and organizing knowledge, but we are far from having testable explanations that afford us the ability to generate predict
not defined in this paper's own words; constellation of concepts specified by a candidate system
oizumi2014-iit-phenomenology-mechanisms-consciousness
Conceptual structure, constellation of concepts ( C ): A conceptual structure is the set of all concepts specified by a candidate set with their respective φ Max values, which can be plotted as a constellation in concept space.
a frame for music listening that is supposed to provide optimal conditions for the purely aesthetic contemplation of (excellent performances of) great musical works together with like-minded people
waldfuhrmann2021-classical-concert-listening
a live performance in which performers and listeners hold distinct but linked roles
waldfuhrmann2021-classical-concert-listening
The other main factor of a concert is its nature as a live performance featuring the distinct, but interrelated roles, of performers and listeners.
not defined in this paper's own words; the only kind of validity the three studies establish, stated as a limitation in the abstract
betsch2018-beyond-confidence-development-of-a
The present studies are limited to the concurrent validity of the scales.
Analyses on psychometric properties included CTT analysis and Rasch model analysis. CTT analysis included internal consistency, test-retest reliability, corrected item-total correlation, average variance extracted (AVE), composite reliability, standard error of measurement, concurrent validity, and exploratory factor analysis (EFA). Rasch model analysis included infit and outfit mean square (MnSq) for each item, item and person separation reliability, and item and person separation index. Also, differential item functioning (DIF) based on Rasch analysis was used to test the measurement invariance across gender and age (Wu et al.).
ahorsu2020-the-fear-of-covid-19-scale-develop
expressing the range of false positives and false negatives
amoretti2021-concept-of-disease-normative
not defined in this paper's own words; a range of plausible values for the estimated cut-point
unal2017-roc-optimal-cut-point
In order to estimate the standard deviation and the confidence interval (CI) for the optimal cut-point, the bootstrap resampling technique is applied [ 14 ].
a range generated by a procedure with long-run coverage, not a posterior probability statement about one observed range
greenland2016-statistical-tests-p-values-confidence-intervals-power
Most of the above misinterpretations translate into an analogous misinterpretation for confidence intervals. For example, another misinterpretation of P > 0.05 is that it means the test hypothesis has only a 5 % chance of being false, which in terms of a confidence interval becomes the common fallacy: 19. The specific 95 % confidence interval presented by a study has a 95 % chance of containing th
not defined in this paper's own words; interval estimates accompanying the divergence times
tamura2021-mega11
Bayesian relaxed-clock methods have long allowed the use of statistical probability distributions that capture prior knowledge (or belief) about the true divergence times in clock calibration constraints on one or more nodes in the phylogeny. Judicious use of these probability densities can make divergence times more accurate and precise ( Tao, Tamura, Mello, et al. 2020 ). Researchers can now use
not defined in this paper's own words; intervals for the true standard Gibbs energy, computed from the covariance matrices
noor2013-gibbs-energy-component-contributions
It is therefore recommended to use confidence intervals, and not point estimates, for simulations and predictions based on standard Gibbs energy estimates.
not defined in this paper's own words; ranges summarizing effect sizes whose test results are comparatively compatible with the data
greenland2016-statistical-tests-p-values-confidence-intervals-power
We can vary the test hypothesis while leaving other assumptions unchanged, to see how the P value differs across competing test hypotheses. Usually, these test hypotheses specify different sizes for a targeted effect; for example, we may test the hypothesis that the average difference between two treatment groups is zero (the null hypothesis), or that it is 20 or −10 or any size of interest. The e
not defined in this paper's own words; possible receptor-ligand geometries
mcnutt2021-gnina-molecular-docking-deep-learning
Molecular docking is a computational procedure in which the non-covalent bonding of molecules, e.g. a protein receptor and a ligand, is predicted. This prediction outputs the conformation and, usually, the binding affinity of the small molecule in its predicted minimal energy state and is used to virtually screen large libraries of compounds [ 1 – 3 ]. Docking is composed of two main steps: sampli
not defined in this paper's own words; variation among geometries for a molecular composition
smith2017-ani1-dataset-organic-molecules
As expected, the normal mode sampling method used to generate non-equilibrium conformations visits areas of conformational space not covered by equilibrium only data.
not defined in this paper's own words; the named cost
Laubach2018-what-if-anything-is-rodent-prefrontal-cortex
In summary, our survey of prefrontal nomenclature supports our claim that there is confusion and controversy, even among PFC researchers, about what defines prefrontal cortex in rodents. This may be driven by inconsistencies between different rodent brain atlases, between atlases and peer-reviewed anatomic studies and between different PFC-focused labs (e.g., some use mPFC for rostral medial corte
response to novelty or complexity judged too difficult to understand
menninghaus2017-measuring-aesthetic-emotions
We also considered the basic emotions of sadness, fear, and disgust, and we included two negative emotions that frequently occur in response to aesthetically disliked stimuli: confusion and boredom. Confusion is a typical emotion that novices experience when faced with a complex and highly unusual stimulus that they cannot understand [ 132 ], that is, when their drive for knowledge is dissatisfied
not defined in this paper's own words; another name for the person-environment fit
menassa2023-healthy-ageing-concepts-definitions
The person-environment fit, also referred to as congruence or mastery, is an explicit contextual factor of adaptation that depends on life-acquired resourcefulness, resilience, and proactivity
the degree to which partners' coping responses are coordinated and mutually supporting
falconier2019-dyadic-coping-couples
the quality of agreeing, being in accord, being in compliance
breslauer2023-stability-political-physical-science
not defined in this paper's own words; the relation between two neurons that the CCH is read as evidence for
Spivak2022-deconvolution-improves-the-detection-and-qua
Whether spiking information will propagate in the brain depends on the effective connectivity between neurons.
not defined in this paper's own words; the space the learning moves through
Pereira2020-unsupervised-learning-of-persistent-and-sequ
Scaling down the overall connectivity during stimulation prevents co-activation of multiple populations, and lead to stable learning.
not defined in this paper's own words; unmodelled spatial persistence requirement
venter2014-targeting-global-protected-area-expansion-biodiversity
Our analyses are subject to a number of caveats. First, we considered relative cost based on gross agricultural rents, not management costs or the opportunity costs for other land uses [33] , nor the practicalities of establishing reserves among these competing land uses. Second, overlay of coarse scale maps of species distributions onto fine-scale protected area maps generates commission errors [
comprises awareness of the causal link between the stimulus that activates the behavioural response and the performance of the behaviour
hollands2016-non-conscious-health-behaviour
requires awareness of three elements: the external stimulus, the ensuing behaviour, and the causal link between them
hollands2016-non-conscious-health-behaviour
Conversely, if individuals are aware of all three elements then this would be regarded as an example of conscious activation of behaviour.
reaching it did not stop voting; an item needed it over at least 2 rounds
gattrell2024-accord-consensus-reporting
Reaching the consensus threshold was not a stopping criterion.
≥80% of a minimum of 20 respondents voting “Agree” or “Strongly agree.”
gattrell2024-accord-consensus-reporting
not defined in this paper's own words; a conceptual framework the strategies could be linked to
powell2015-refined-compilation-implementation-strategies-eric
There are also limitations related to the content of the refined compilation. First, the evidence base for each strategy was not considered because the purpose of this work was to identify the range of potential options available. Second, the strategies were not explicitly tied to relevant theories or conceptual models. The compilation’s utility would be enhanced by linking each strategy to the do
not defined in this paper's own words; a framework naming the factors that shape whether an intervention is taken up in practice
smith2020-rapid-implementation
Multiple implementation science frameworks have increased potential for rapid uptake, such as: the Consolidated Framework for Implementation Research (CFIR) [ 50 , 54 ], My Own Health Report (MOHR) [ 37 ], Practical, Robust, Implementation and Sustainability Model (PRISM) [ 40 ] and Reach, Effectiveness, Adoption, Implementation, and Maintenance (RE-AIM) [ 4 , 40 ].
not defined in this paper's own words; an implementation science framework the paper says lacks explicit health equity considerations
eslava-schmalbach2019-equity-implementation-research
Several frameworks have been used in implementation sciences, including the Quality Implementation Framework [ 19 ], the Consolidated Framework for Implementation Research (CFIR) [ 15 ] and Promoting Action on Research Implementation in Health Services (PARISH) [ 20 ].
not defined in this paper's own words; the fixing of a memory
Camina2017-the-neuroanatomical-neurophysiological-and-p
Furthermore, in human beings, this process of consolidation is thought to contribute to the development of procedural knowledge
not defined in this paper's own words; what sleep replay does
Drieu2019-hippocampal-sequences-during-exploration-mec
Complementing these mechanisms, sleep replay would sustain memory consolidation.
not defined in this paper's own words; guidance for clear, complete, and accurate randomized-trial reporting
munafo2017-manifesto-reproducible-science
Improving the quality of reporting. Pre-registration will improve discoverability of research, but discoverability does not guarantee usability. Poor usability reflects difficulty in evaluating what was done, in reusing the methodology to assess reproducibility, and in incorporating the evidence into systematic reviews and meta-analyses. Improving the quality and transparency in the reporting of r
not defined in this paper's own words; reporting guideline for randomised controlled clinical trials
kilkenny2010-arrive-guidelines-reporting-animal-research
Evidence provided by reviews of published research suggests that many researchers and peer reviewers would benefit from guidance about what information should be provided in a research article. The CONSORT Statement for randomised controlled clinical trials was one of the first guidelines developed in response to this need [24] , [25] . Since publication, an increasing number of leading journals h
not defined in this paper's own words; the reporting framework adapted for the paper's pilot-study checklist
thabane2010-a-tutorial-on-pilot-studies-the-what
Adopted from the CONSORT Statement [ 9 ], Table 3 provides a checklist of items to consider including in a report of a pilot study.
THIS PAPER'S HEAD TERM for what bruder2013 calls CONSPIRACY MENTALITY. `individuals' general tendency to engage with conspiracy theories`. Two papers, one journal, one year, one construct, TWO PRIMARY NAMES - and bruder2013 lists this one as an alternative while using the other
brotherton2013-measuring-belief-in-conspiracy-the
The psychology of conspiracy theory beliefs is not yet well understood, although research indicates that there are stable individual differences in conspiracist ideation – individuals’ general tendency to engage with conspiracy theories.
not defined in this paper's own words; Swami et al's name for the same thing - the paper marks the synonymy with `sometimes called`
bruder2013-measuring-individual-differences-i
There have been a number of initial efforts to measure individual differences in conspiracy mentality (sometimes called “conspiracist ideation”; Swami et al., 2011 ), the most prominent of which is Swami and colleagues’ Belief in Conspiracy Theories Inventory
`the general susceptibility to explanations based on such theories, THAT IS, their conspiracy mentality`, and operationally the CMQ. FOUR NAMES FOR THIS ONE THING appear in a single paragraph, each attributed: conspiracy mentality (Moscovici), CONSPIRACIST IDEATION (Swami), general conspiracist beliefs (Swami), generic conspiracy beliefs (here)
bruder2013-measuring-individual-differences-i
There have been a number of initial efforts to measure individual differences in conspiracy mentality (sometimes called “conspiracist ideation”; Swami et al., 2011 ), the most prominent of which is Swami and colleagues’ Belief in Conspiracy Theories Inventory
the general propensity to subscribe to theories blaming a conspiracy of ill-intending individuals or groups for important societal phenomena
bruder2013-measuring-individual-differences-i
not defined in this paper's own words; five items, no named conspiracies, one dimension, three languages
bruder2013-measuring-individual-differences-i
In this context, we will propose the Conspiracy Mentality Questionnaire (CMQ), a short (5-item) measure of generic conspiracy beliefs that we administered in a large ( N = 7,766) international study spanning North American (US), Western European (UK and Ireland; Germany), and Middle Eastern (Turkey) cultures
not defined in this paper's own words; Bruder et al's competing instrument, described here as more generic still - non-specific about objectives AND entities
brotherton2013-measuring-belief-in-conspiracy-the
The GCB specifies the content and objectives of some conspiracies (e.g., the suppression of new technology) while remaining non-specific about any entities or events involved in the conspiracies. In contrast, Bruder et al.’s Conspiracy Mentality Questionnaire (CMQ) remains largely non-specific in regards to both objectives and entities or events, with the exception of referring to specifically pol
Shadish et al. define construct validity as “making inferences from the sampling particulars of a study to the higher-order constructs they represent” 94 —said another way, this type of experimental validity maps theoretical constructs of knowledge to the observed phenomenon within the dataset.
chancellor2020-methods-in-predictive-techniques-for-mental-health
not defined in this paper's own words; assessment of a construct and its relations to other measures and criteria
boateng2018-best-practices-developing-validating-scales
Construct validity is the “extent to which an instrument assesses a construct of concern and is associated with evidence that measures other constructs in that domain and measures specific real-world criteria” ( 2 ). Four indicators of construct validity are relevant to scale development: convergent validity, discriminant validity, differentiation by known groups, and correlation analysis.
not defined in this paper's own words; evidence that a measure behaves with related and distinct constructs as expected
boateng2018-best-practices-developing-validating-scales
Scale validity is the extent to which “an instrument indeed measures the latent dimension or construct it was developed to evaluate” ( 2 ). Although it is discussed at length here in Step 9, validation is an ongoing process that starts with the identification and definition of the domain of study (Step 1) and continues to its generalizability with other constructs (Step 9) ( 36 ). The validity of
Regularly highlighting the relevance of course content to learning outcomes (i.e., constructive alignment; Biggs, 1996 )
hamilton2023-compassionate-pedagogy-neurodiversity
teaching and learning activities and environments should be aligned with learning outcomes
hugo-van-dyk2023-transfer-climate-education
aiming to categorize verbal data for the purpose of classification, summarization and tabulation
savadogo2015-community-definition-poverty
not defined in this paper's own words; the paper's stated research tool - applied to secondary sources, qualitatively
dhawan2020-online-learning-a-panacea-in-the-t
The research tool used for analyzing the data which amassed from different sources for this study is a content analysis and the research method is descriptive research. We have taken into consideration the qualitative aspects of the research study.
quantification of manifest and latent media content
geise2023-integrating-media-content-reception-effects
One way of quantifying all this higher-order and often latent content (or subtext) is through a procedure known as content analysis ( Krippendorff, 2004 ; Riff et al., 2014 ; Neuendorf, 2017 ). Historically, content-analyzing movies and media more broadly was an arduous task. For example, the famous National Television Violence Study ( Federman, 1995 ) relied on manual labor from human coders to a
not defined in this paper's own words; adequacy with which a measure assesses the intended domain
boateng2018-best-practices-developing-validating-scales
Content validity, also known as “theoretical analysis” ( 5 ), refers to the “adequacy with which a measure assesses the domain of interest” ( 24 ). The need for content adequacy is vital if the items are to measure what they are presumed to measure ( 1 ). Additionally, content validity specifies content relevance and content representations, i.e., that the items capture the relevant experience of
should entail consulting the target population to ensure the meaningfulness and comprehensiveness of scale content
litz2022-moral-injury-syndrome
not defined in this paper's own words; automated execution of test suites on proposed code changes
afgan2018-galaxy-platform-accessible-reproducible-collaborative
Community contributions have helped the Galaxy framework and its tool suite to grow considerably. One hundred and seventy-four developers, who have collectively produced 13 135 commits within just the past two years (63% increase since January 2016), have improved Galaxy's scalability, functionality, and usability. The project utilizes the Travis and Jenkins continuous integration (CI) services to
not defined in this paper's own words; temporary integration and test gating of contributions
virtanen2020-scipy-fundamental-algorithms-scientific-computing
Test-driven development has been described as a way to manage fear and uncertainty when making code changes 91 . For each component of SciPy, we write multiple small executable tests that verify its intended behavior. The collection of these, known as a ‘test suite’, increases confidence in the correctness and accuracy of the library, and allows us to make code modifications known not to alter des
a gradual and continuous process
malyshev2015-macrophage-plasticity-concept
not defined in this paper's own words; what the tone responses form instead of groups - and therefore CANNOT BE USED ON THEIR OWN TO DEFINE FUNCTIONALLY SIGNIFICANT GROUPS OF NEURONS
Goyernd-a-novel-class-of-inferior-colliculus-princip
IC neurons exhibit diverse responses to tones, but a comprehensive study showed that these responses form a continuum and cannot be used on their own to define functionally significant groups of neurons ( Palmer et al., 2013 ).
not defined in this paper's own words; contrasted with an ontology, which also formally specifies the relationships between its terms
eilbeck2005-sequence-ontology
One essential difference between a controlled vocabulary, such as the Feature Table, and an ontology is that an ontology is not merely a collection of predefined terms that are used to describe data.
the database's enumerated fields - taxonomy level, `possible taxonomic changes from the previous release (new, split, move, merge, rename, and abolish)`, and genome type
lefkowitz2018-virus-taxonomy-the-database-of-the
The tables store a controlled vocabulary used for specific fields where the possible data values remain fairly constant. These include taxonomy level (currently species, genus, subfamily, family, and order), possible taxonomic changes from the previous release (new, split, move, merge, rename, and abolish), and virus genome type (e.g. dsDNA, ssDNA, dsRNA, ssRNA(+), ssRNA(–), etc.) that forms part
This theme emphasizes the importance of choice and accessibility, including sufficient time to engage, and the flexibility to choose how and when to contribute
hamilton2017-meaningful-patient-engagement-research
not defined in this paper's own words; the 3C factor this paper RENAMES - practical barriers, criticised for putting a system failure onto the individual
betsch2018-beyond-confidence-development-of-a
convenience: physical availability, affordability and willingness-to-pay, geographical accessibility, ability to understand (language and health literacy) and appeal of immunization service convenience: structural barriers, perceived behavioral control access: ability of individuals to be reached by, or to reach, recommended vaccines affordability: ability of individuals to afford vaccination -- -
not defined in this paper's own words; an operation running over each node in a graph
reiser2022-graph-neural-networks-materials-chemistry
Message passing can also be understood as a convolution operation running over each node in a graph.
not defined in this paper's own words; operation proposed as a replacement for dense layers
voulodimos2018-deep-learning-for-computer-vision
In the convolutional layers, a CNN utilizes various kernels to convolve the whole image as well as the intermediate feature maps, generating various feature maps. Because of the advantages of the convolution operation, several works (e.g., \ [23, 24\]) have proposed it as a substitute for fully connected layers with a view to attaining faster learning times
a typical artificial neural network in deep learning
lao2017-deep-learning-radiomics-glioblastoma
not defined in this paper's own words; DELAY's architecture, an inverted VGGnet
reagor2023-pseudotime-lagged-causality
Here we describe DELAY (short for De picting La gged Causalit y ), a convolutional neural network for the inference of gene-regulatory relationships across pseudotime-ordered single-cell trajectories.
not defined in this paper's own words; convolutional models used for pose scoring
mcnutt2021-gnina-molecular-docking-deep-learning
Deep learning (DL) methods allow direct inference of features from inputs. They learn a representation of the inputs via layers of simple, non-linear models which transform the representation to higher abstractions to learn complex functions [ 29 ]. DL methods have demonstrated success in a variety of fields, such as computer vision and natural language processing [ 30 , 31 ]. In recent years, the
not defined in this paper's own words; deep-learning models transforming images into task-specific outputs
mcquin2018-cellprofiler-next-generation-image
Convolutional neural networks (CNNs) are a type of deep learning model that transforms input images into outputs specified by the problem type [ 16 ]. For instance, image classification models transform images into categorical labels [ 17 ], while image segmentation models transform images into segmentation masks [ 18 ]. CNNs are now widely used to solve many computer vision tasks, given their abi
not defined in this paper's own words; neural networks built from convolutional layers for images
tiulpin2018-knee-osteoarthritis-deep-learning
Deep learning (DL), and in particular convolutional neural networks (CNN), has recently shown ground-breaking results in a variety of general image recognition
not defined in this paper's own words; used in several studies interchangeably with resilience
hannon2022-perinatal-resilience-concept
There were several examples of coping or coping strategies used synonymously with resilience [ 54 , 58 , 81 , 82 ]
not defined in this paper's own words; the ways patients act to manage illness and its demands
ahn2025-dignity-in-care-older-patients
Such active coping strategies contribute to improvements in both health outcomes and quality of life.
the cognitive and behavioral activities individuals engage in to deal with stressful situations encountered in life
wang2022-suicide-resilience
`The three individuals shared 1660 of 6315 unique sequences. These 1660 sequences (the `CORE MICROBIOME`) contributed 66% of the reads` - an intersection over three people
zaura2009-defining-the-healthy-core-microbio
There was a large overlap in the higher taxa, "species-level" phylotypes and unique sequences among the three microbiomes: 84% of the higher taxa, 75% of the OTUs and 65% of the unique sequences were present in at least two of the three microbiomes. The three individuals shared 1660 of 6315 unique sequences. These 1660 sequences (the "core microbiome") contributed 66% of the reads. The overlapping
not defined in this paper's own words; suite of members shared among consortia from similar habitats
berg2020-microbiome-definition-re-visited-o
Based on co-occurrence analyses and experimental data capturing temporal and spatial dynamics of microbiomes, researchers have sought to define a core microbiota. This is indeed helpful as native microbiomes are often highly complex, comprising thousands of species across different kingdoms. Defining core microbiota can facilitate discrimination of the stable and permanent members of a microbiome
not defined in this paper's own words; taxa shared across anammox systems despite different operation
lawson2017-anammox-metabolic-network
The high similarity between these genomes and the genomes recently recovered from a single-stage anammox reactor 16 suggests that a core microbiome exists in anammox-based wastewater treatment systems, despite differences in reactor operation and influent wastewater composition.
Pearson correlation among all OTU pairs, with an interaction assumed above a threshold
kurtz2015-spiec-easi-microbial-networks
A commonly used tool to infer a network is correlation analysis; that is computing Pearson’s correlation coefficient among all pairs of OTU samples, and an interaction between microbes is assumed when the absolute value of the correlation coefficient is sufficiently high [ 15 , 16 ].
not defined in this paper's own words; association analysis used in construct validation
boateng2018-best-practices-developing-validating-scales
Construct validity is the “extent to which an instrument assesses a construct of concern and is associated with evidence that measures other constructs in that domain and measures specific real-world criteria” ( 2 ). Four indicators of construct validity are relevant to scale development: convergent validity, discriminant validity, differentiation by known groups, and correlation analysis.
not defined in this paper's own words in this sentence
liao2023-viscoelasticity-collective-bacteria-motion
The results imply that fluid elasticity enhances correlation length while fluid viscosity mainly slows down the dynamics.
the approximate size of correlated domains within a larger population
wolf2022-bioelectric-stimulation-collective-migration
agricultural-opportunity sense: forgone gross agricultural rent
venter2014-targeting-global-protected-area-expansion-biodiversity
To account for the spatial variation in the cost of protected area expansion, we used a dataset on agricultural opportunity cost [18] , converted to 2012 US$ and with no data values filled using regularized spline interpolation with tension ( Figure 1C ). The dataset provides the estimated gross agricultural rents for terrestrial areas mapped at approximately the 5 km resolution. We use these data
endowed sense: purchase plus discounted future management through project completion
possingham2015-optimal-conservation-outcomes-restoration-protection
The variables c P and c R denote the costs of protection and restoration respectively. Because habitat must be purchased before it is restored, c R is generally larger than c P . However, if land has been abandoned, or if the primary value of land comes from the intact habitat itself (e.g., timber), then purchasing degraded land for restoration may be cheaper than purchasing intact habitat for pro
not defined in this paper's own words; resource endpoint of implementation
lewis2018-classification-causality-implementation-mechanisms
Implementation scientists have isolated eight outcomes as the desired endpoints of implementation efforts: acceptability, feasibility, appropriateness, adoption, penetration, fidelity, cost, and sustainability ( 1 ). Many of these outcomes are appropriately construed as latent variables, but others are manifest/observable in nature ( 30 ); a recent systematic review offers measures of these outcom
43 This includes analyses that only examine costs and cost offsets (that is, cost analysis) or those that examine both costs and consequences.
husereau2022-consolidated-health-economic-evaluation-reporting-standards-2022
an analysis examining only costs and cost offsets
husereau2022-cheers-2022-statement
This includes analyses that only examine costs and cost offsets (that is, cost analysis) or those that examine both costs and consequences.
increased functional connectivity between two brain networks during a task
beaty2015-default-executive-network-creativity
Moreover, temporal connectivity analysis revealed increased coupling between default and salience network regions (bilateral insula) at the beginning of the task, followed by increased coupling between default and executive network regions at later stages.
the linear influence of one tipping element's state on another's control, positive or negative
klose2020-interacting-tipping-elements
At the same time, a slowdown of the AMOC leads to a relative cooling around Greenland and hence corresponds to a negative coupling [ 54 ].
a complex phenomenon involving various types of fears, checking and reassurance seeking, and reexperiencing symptoms, along with associated features such as excessive avoidance and panic buying
taylor2020-covid-stress-syndrome
quasi-dimensional: the classes differ in severity, not in kind
taylor2020-covid-stress-syndrome
The five classes differed quantitatively rather than qualitatively in the severity of scores on each of the COVID Stress Scales (see Supporting Information). Accordingly, in the following analyses, the COVID stress syndrome is treated as a quasi‐dimensional construct, assessed by total score.
cerebral palsy
cunningham2019-automated-posture-estimation-cerebral-palsy
critical power
jones2017-critical-power-concept
Continuous Plankton Recorder
ostle2019-ocean-plastics-60-year-time-series
candidate phyla radiation
speth2016-anammox-full-scale-microbial-ecology
conducting polymers
feig2018-conductive-interpenetrating-network-hydrogels
π–d conjugated coordination polymers
huang2015-conjugated-coordination-polymer-conductivity
not defined in this paper's own words
rahimi2024-saturation-qualitative-research
Literature review shows that saturation affects the quality, credibility, generalizability, transferability, and accuracy of qualitative studies.
refers to public opinion leaders using their often extensive, clinical background to influence policy-making processes
van-wijk2022-public-opinion-leadership-nursing
classical receptive field
zhu2013-sparse-coding-dynamical-system
the portion of the stimulus space that changes a neuron's response when a stimulus is presented or removed
zhu2013-sparse-coding-dynamical-system
In general, the CRF is a measurement of the portion of the stimulus space that causes a change in a neuron's response when a stimulus is presented (or removed).
a critical metabolic rate, though expressed as an external power output
jones2017-critical-power-concept
Although it is expressed functionally as an external power output, it should be noted that CP reflects a ‘critical metabolic rate’
not defined in this paper's own words; the power asymptote of the power-duration curve, in watts
jones2017-critical-power-concept
This asymptote has been termed the critical power (CP), which is measured in watts (W), while the curvature of the power–time relationship represents the work capacity available above CP and has been termed W ′ (measured in kilojoules [kJ]).
a skeptical view of the selection of the news provided through algorithms and the news sources must be tracked
polancolevican2022-social-media-literacy-concept
not defined in this paper's own words; judging whether online health information is sound before acting on it
cho2025-digital-literacy-dementia-caregivers
Digital literacy involves critical thinking and problem-solving skills. It requires persons with dementia and their caregivers to assess the reliability of online information, identify biases, and make informed decisions on the basis of digital health information
not defined in this paper's own words; population where stress probability becomes more likely than not
sell2014-group-size-scalar-stress-archaeology
As apparent from the logistic regression plot ( Fig. 5A ), the model indicates that lower probabilities of experiencing a critical level of scalar stress are associated with smaller group sizes and higher probabilities with larger group sizes. The analysis allows pinpointing the size above which scalar stress can be considered critical: the point where the probability begins to change from low to
the strength of pairwise interactions at which community feasibility (positive abundance for all species at equilibrium 24 ) is lost for a given fraction of the simulations
bairey2016-high-order-species-interactions-diversity
The cross-correlation values between the fluorescent traces of inhibitory neurons and running speed revealed a single positive peak at −200 ms, signifying that the running onset was ahead of the spontaneous neuronal activities (Fig. 4e , 0.31 ± 0.03). In contrast, cross-correlation values between the calcium signals of excitatory neurons and running speed do not have a significant peak
Chen2019-differential-cell-type-dependent-brain-state
not defined in this paper's own words; how locomotion coupling is quantified
Chen2019-differential-cell-type-dependent-brain-state
To characterize the temporal dynamics of neural activities with locomotion and among the simultaneously recorded neurons, we calculated the cross-correlation and pairwise-correlation values, respectively.
the product of one species which can be consumed by another one
davanidavari2019-prebiotics-definition
not defined in this paper's own words; one species' fermentation product is another's substrate - the mechanism by which co-operation widens the community
thursby2017-introduction-to-the-human-gut-micr
Microbial cross-feeding is one mechanism proposed to mediate this effect.
not defined in this paper's own words; antigen-reactivity boundary against other coronaviruses
zhou2020-a-pneumonia-outbreak-associated-wi
For serological detection of 2019-nCoV, we used a previously developed nucleocapsid (N) protein from bat SARSr-CoV Rp3 as antigen for IgG and IgM enzyme-linked immunosorbent assays (ELISAs), as this protein shared 92% amino acid identity to N protein of 2019-nCoV (Extended Data Fig. 5 ) and showed no cross-reactivity against other human coronaviruses except SARSr-CoV 7 . We were only able to obtai
not defined in this paper's own words; binding response spanning SARS-CoV and SARS-CoV-2 antigens
roltgen2020-defining-the-features-and-duration
A total of 254 individuals with a positive SARS-CoV-2 real-time RT-PCR (rRT-PCR) nasopharyngeal swab test were included in the study (fig. S1). Study subjects were identified either after routine serology testing or occupational health screening in the Stanford Health Care Clinical Laboratories for anti-SARS-CoV-2 RBD IgM and IgG antibodies (136 asymptomatic individuals or outpatients), or after t
not defined in this paper's own words; held-out confirmation of predictive performance
harrison2018-mixed-effects-modelling-ecology
Global models should not contain huge numbers of variables and interactions without prior thought about what the models represent for a study system. In cases where all-subsets selection from a global model is performed, it is important to view these model selection exercises as exploratory ( Symonds & Moussalli, 2011 ), and hold some data back from these exploratory analyses to be used for cross-
not defined in this paper's own words; testing prediction on each data point after fitting to all the others
zufall2023-legal-balancing-of-interests
In order to evaluate the time-dependent model in terms of predictability, we also cross-validate our dataset. As the dataset is relatively small ( N = 150 ), we use leave-on-out (LOO) cross-validation.
not defined in this paper's own words; estimating generalization by iterative training and testing splits
tortora2020-neuroprediction-ai-forensic-psychiatry-criminal-justice
First, application of neuroprediction techniques requires an inference from group-level to individual predictions ( Hahn et al., 2017 ). Another challenge concerns validation of the results in a new group – different from the data set that was used to train the algorithm. The validity of prediction models is assessed by their ability to generalize; for most learning algorithms, the standard practi
cytokine release syndrome
jarczak2022-cytokine-storm-definition
a systemic inflammatory response triggerable by infections and certain drugs
shimabukurovornhagen2018-cytokine-release-syndrome
Cytokine release syndrome (CRS) is a systemic inflammatory response that can be triggered by a variety of factors such as infections and certain drugs.
compassion satisfaction
jeong2025-vicarious-resilience-nurses
critical speed
jones2017-critical-power-concept
cytokine storm
jarczak2022-cytokine-storm-definition
critical salt concentration
chang2017-coacervates-sequence-entropy-control
not defined in this paper's own words; column-compressed sparse-matrix format
virtanen2020-scipy-fundamental-algorithms-scientific-computing
scipy.sparse offers seven sparse matrix data structures, also known as sparse formats. The most important ones are the row- and column-compressed formats (CSR and CSC, respectively). These offer fast major-axis indexing and fast matrix-vector multiplication, and are used heavily throughout SciPy and dependent packages.
Cambridge structural database
moosavi2020-metal-organic-framework-diversity
not defined in this paper's own words; the abbreviation for the Cambridge Structural Database
groom2016-cambridge-structural-database
This paper is the definitive article describing the creation, maintenance, information content and availability of the Cambridge Structural Database (CSD), the world’s repository of small molecule crystal structures.
complete spatial randomness
mort2016-pigmentation-patterns-mathematical-model
not defined in this paper's own words; row-compressed sparse-matrix format
virtanen2020-scipy-fundamental-algorithms-scientific-computing
scipy.sparse offers seven sparse matrix data structures, also known as sparse formats. The most important ones are the row- and column-compressed formats (CSR and CSC, respectively). These offer fast major-axis indexing and fast matrix-vector multiplication, and are used heavily throughout SciPy and dependent packages.
combined evaluation effects associated with language background, embodied or presumed identity, and cultural conventions
fan2019-gender-cultural-bias-student-evaluations
This study differs from all previous studies in several ways. First, our study is by far the largest data study and the only institution-wide study of SET; second, we look at evidence for potential cultural bias and the interplay between gender and cultural bias in a way that has never been considered (We are, of course, mindful that ‘culture’ is a complex and contested concept. We use the term ‘c
not defined in this paper's own words; lower scores associated with non-English language background
fan2019-gender-cultural-bias-student-evaluations
We found significant association between SET scores and gender, as well as culture, where the variable indicating whether the teacher has English or non-English background as defined in the Statistical Analysis section, is used as a proxy for culture. About 38% of the university’s teaching staff do not have English speaking background, and this population is racially diverse, comprising of people
a non-material resource that accumulates throughout the life course
kamphuis2015-bourdieu-cultural-capital-food-choices
for food choices, the resources an individual possesses and employs to make healthy food choices
kamphuis2015-bourdieu-cultural-capital-food-choices
The practice or strategy of action ([ 30 ], p. 39) would be healthy food choice, and the currency or cultural capital would be the resources an individual possesses and employs to make healthy food choices.
change in socially learned and transmitted cultural variation over time
brand2019-cultural-evolution-emotion-song-lyrics
The quantitative description of trends is fundamental, but a further necessary step is to understand what drives these trends. Cultural evolution theory (Boyd and Richerson, 1985 ; Cavalli-Sforza and Feldman, 1981 ; Mesoudi 2011 ) provides a series of concepts that allows such an endeavour. Drawing a parallel with genetic evolution, this field focuses on how cultural variation is transmitted from
not defined in this paper's own words; art as a product of cumulative cultural evolution, studiable at scale by the method
epjds2023-compression-ensembles
While we focus on complexity, the same approach could be used on other related phenomena. For example, Sinclair et al. [68] raise the concept of “aesthetic value” or “attractiveness” of a given cultural product, to discuss whether art and music indeed could be considered as products of cumulative cultural evolution [66] or not, as “cumulative” would allude to objective improvement over time [69].
The term cultural safety first was first proposed by Dr. Irihapeti Ramsden and Māori nurses in the 1990s [74], and in 1992 the Nursing Council of New Zealand made cultural safety a requirement for nursing and midwifery education [32].
curtis2019-cultural-safety-rather-than-cultural
not defined in this paper's own words; the alternative term, distinguished from competency by foregrounding power differentials rather than knowledge of other cultures
curtis2019-cultural-safety-rather-than-cultural
A key difference between the concepts of cultural competency and cultural safety is the notion of ‘power’. There is a large body of work, developed over many years, describing the nuances of the two terms [34, 36, 38, 43, 46, 49, 59, 62–69]. Similar to cultural competency, this concept has varying interpretations within and between countries.
“Cultural safety requires healthcare professionals and their associated healthcare organisations to examine themselves and the potential impact of their own culture on clinical interactions and healthcare service delivery. This requires individual healthcare professionals and healthcare organisations to acknowledge and address their own biases, attitudes, assumptions, stereotypes, prejudices, structures and characteristics that may affect the quality of care provided. In doing so, cultural safety encompasses a critical consciousness where healthcare professionals and healthcare organisations engage in ongoing self-reflection and self-awareness and hold themselves accountable for providing culturally safe care, as defined by the patient and their communities, and as measured through progress towards acheiveing health equity. Cultural safety requires healthcare professionals and their associated healthcare organisations to influence healthcare to reduce bias and achieve equity within the workforce and working environment”.
curtis2019-cultural-safety-rather-than-cultural
a modelled prediction of ecological impact, weighting stressor intensity by habitat vulnerability
halpern2015-cumulative-human-impacts-ocean
Our assessment of cumulative impact, although a prediction rather than measurement of condition, is highly valuable because of its global, scalable and quantitative comparability.
the per-pixel average of the habitat vulnerability-weighted stressor intensities
halpern2015-cumulative-human-impacts-ocean
antibody-tethered pA-MNase cleavage followed by released-fragment extraction, end polishing, and adapter ligation
kayaokur2019-cut-tag-for-efficient-epigenomic-p
The advent of massively parallel sequencing and the dramatic reduction in cost per base has fueled a genomics revolution, however, the full promise of epigenomic profiling has lagged owing to limitations in methodologies used for mapping chromatin fragments to the genome 1 . Chromatin immunoprecipitation with sequencing (ChIP-seq) and its variations 2 – 5 suffer from low signals, high backgrounds
not defined in this paper's own words; the predecessor - pA-MNase instead of pA-Tn5; better footprint resolution, more library-preparation steps, and here it supplies the CTCF reference list
kayaokur2019-cut-tag-for-efficient-epigenomic-p
This shows that CUT&Tag protects a “footprint” spanning 80 bp directly over the CTCF motif (Fig. 5c ). While the segment protected from Tn5 integration is larger than the ~45 bp protected from MNase in CUT&RUN 9 , this indicates that the tethered transposase produces high resolution maps of factor binding sites.
not defined in this paper's own words; single-end trimming comparator
bolger2014-trimmomatic-flexible-trimmer
We also compared the performance of Trimmomatic with a variety of existing adapter and quality filtering tools in similar referenced-based scenarios, as described in the Supplementary Methods . The tools selected were AdapterRemoval ( Lindgreen, 2012 ), and Scythe/Sickle ( https://github.com/najoshi/ ), which fully support paired-end data and EA-Utils ( Aronesty, 2013 ), which maintains read pairi
not defined in this paper's own words; software used to trim raw NGS reads
zhou2020-a-pneumonia-outbreak-associated-wi
High-throughput sequencing, pathogen screening and genome assembly Samples from patient BALF or from the supernatant of virus cultures were used for RNA extraction and next-generation sequencing (NGS) using BGI MGISEQ2000 and Illumina MiSeq 3000 sequencers. Metagenomic analysis was carried out mainly based on the bioinformatics platform MGmapper (PE_2.24 and SE_2.24). The raw NGS reads were first
not defined in this paper's own words; the most severe course of cytokine release syndrome
jarczak2022-cytokine-storm-definition
These conditions are widely referred to as cytokine release syndrome (CRS) or, in particularly severe courses, cytokine storm (CS).
the severe and rare form of an excessive cytokine release
jarczak2022-cytokine-storm-definition
In its severe (albeit rare) form, this is referred to as cytokine storm.
disability-adjusted life-years, quantifying both years lost to premature mortality and years lived with disability
ferrari2024-global-burden-371-diseases
GBD 2021 highlights new and existing health threats that require prioritisation on international public health agendas. GBD 2021 estimates will allow up to date identification of health disparities within and between populations, enabling evaluation of how these have changed over time, quantify health gains, and, in turn, identify policies or interventions that present the most promising opportuni
the sum of years of life lost prematurely and years lived with disability
roth2020-global-burden-cardiovascular-diseases
as this paper fixes it: departure from the Holocene range, explicitly acknowledged as partly a value judgement
hansen2013-climate-change
Determination of the dangerous level of global warming inherently is partly subjective, but we must be as quantitative as possible.
as used in the Framework Convention: undefined, which is the gap the paper sets out to fill
hansen2013-climate-change
The Framework Convention [6] does not define a dangerous level for global warming or an emissions limit for fossil fuels.
not defined in this paper's own words; the threshold the 1992 treaty obliges the world to avoid and never defines, which this paper sets out to supply
hansen2013-climate-change
We have a planetary climate crisis that requires urgent change to our energy and carbon pathway to avoid dangerous consequences for young people and other life on Earth.
not defined in this paper's own words; distributed-array implementation and execution library
harris2020-array-programming-numpy
The community’s efforts to fill this gap led to a proliferation of new array implementations. For example, each deep-learning framework created its own arrays; the PyTorch 38 , Tensorflow 39 , Apache MXNet 40 and JAX arrays all have the capability to run on CPUs and GPUs in a distributed fashion, using lazy evaluation to allow for additional performance optimizations. SciPy and PyData/Sparse both
not defined in this paper's own words; parallel-computing backing for xarray structures
hoyer2017-xarray-labeled-arrays-datasets-python
Out-of-core computation: xarray’s data structures can be backed by dask [21] instead of NumPy to support parallel and streaming computation on data that does not fit into memory, up to 100s of GB or TBs in size. Such large datasets (“big data”) are increasingly prevalent in science.
not defined in this paper's own words; overfitting control whose usual rotations/flips may be invalid for physical fields
rasp2020-weatherbench
Another common method to prevent overfitting is data augmentation, which in traditional computer vision is done by e.g. randomly rotating or flipping the image. However, many of the traditional data augmentation techniques are questionable for physical fields. Random rotations, for example, will likely not work for this dataset since the x and y directions are physically distinct. Thus, finding go
regularization technique
voulodimos2018-deep-learning-for-computer-vision
not defined in this paper's own words; data-contingent searching also called P-hacking
munafo2017-manifesto-reproducible-science
What proportion of published research is likely to be false? Low sample size, small effect sizes, data dredging (also known as P -hacking), conflicts of interest, large numbers of scientists working competitively in silos without combining their efforts, and so on, may conspire to dramatically increase the probability that a published finding is incorrect 1 . The field of metascience — the scienti
not defined in this paper's own words; using data-mining procedures to produce statistically significant results
ioannidis2005-false-findings
Commercially available “data mining” packages actually are proud of their ability to yield statistically significant results through data dredging.
the integration of data from multiple experiments
luecken2019-single-cell-rnaseq-best-practices
not defined in this paper's own words; combining information across hospital digital systems
johnson2016-mimic-iii-critical-care-database
Despite this advance, interoperability of digital systems remains an open issue, leading to challenges in data integration. As a result, the potential that hospital data offers in terms of understanding and improving care is yet to be fully realized. In parallel, the scientific research community is increasingly coming under criticism for the lack of reproducibility of studies 2 .
not defined in this paper's own words; operations converting integrated diffraction intensities into scaled, assessed data
evans2013-how-good-are-my-data-and-what-is-t
The new scaling program AIMLESS is described and tests of refinements at different resolutions are compared with analyses from the scaling step. Following integration of the observed diffraction spots, the process of ‘data reduction’ initially aims to determine the point-group symmetry of the data and the likely space group. This can be performed with the program POINTLESS . The scaling program th
not defined in this paper's own words; real-time conversion of raw omics measurements into smaller summaries
stephens2015-genomical
In contrast, we do see great opportunities for data reduction and real-time analysis of other ‘omics analysis. For example, once sequencing becomes fast enough and the methods mature enough to correctly infer transcript expression levels in real time, we anticipate that raw RNA-seq reads will no longer be stored, except for specific research purposes. Already several such “streaming” algorithms ha
not defined in this paper's own words; stores that remain isolated without standards and protocols
wieczorek2012-darwin-core-evolving-community-biodiversity-data-standard
A general challenge of biodiversity data that is shared with many other information domains is the lack of a coordinated publishing and integration system; data repositories tend to be isolated from each other in the absence of standards for data and communication protocols. Heterogeneity in meaning and content of terms creates obstacles in every aspect of data integration and use, including disco
not defined in this paper's own words; venues for persistent open dissemination
benchimol2015-record-routinely-collected-health-data
We strongly support the dissemination of detailed information on study methods and results. When possible, we encourage the prior or simultaneous publication of the study protocol, raw data results, and, if applicable, programming code. This information is useful to peer reviewers and readers in assessing the validity of study findings. A number of opportunities are available to researchers for op
a processing operation rather than an achievement, so it cannot justify the data categories on its own
becker2024-gdpr-purpose-definition
Importantly, ‘data sharing’ or ‘data sharing for research’, while describing the overall nature of the processing, does not provide the justification of categories of data subjects and personal data categories undergoing processing. These essential means depend on the objectives and the research question of the external researcher requesting data access. Data sharing is a processing operation rath
not defined in this paper's own words; making research data available to others
munafo2017-manifesto-reproducible-science
The Center for Open Science has suggested that journals assign a badge to articles with open data (as well as to other open practices such as pre-registration and open materials). The main purpose of the badges is to signal that the journal values these practices. The journal Psychological Science has adopted these badges, and there is evidence that the open data badge has had a positive effect, i
not defined in this paper's own words; an organisation of data for efficient access
delaneau2019-haplotype-estimation
A PBWT of haplotypes is a data structure in which any two haplotypes sharing a long prefix (i.e., match) at a given position are sorted next to each other at that position.
not defined in this paper's own words; class assigned to the NumPy array
harris2020-array-programming-numpy
The NumPy array is a data structure that efficiently stores and accesses multidimensional arrays 17 (also known as tensors), and enables a wide variety of scientific computation. It consists of a pointer to memory, along with metadata used to interpret the data stored there, notably ‘data type’, ‘shape’ and ‘strides’ (Fig. 1a ).
as ACQUIRED, which for particle physics is enormous
stephens2015-genomical
Particle physics also produces massive quantities of raw data, although the footprint is surprisingly limited since the vast majority of data are discarded soon after acquisition using the processing power that is coupled to the sensors [ 8 ].
as STORED, which for genomics is a small fraction of what is produced and for particle physics is smaller still
stephens2015-genomical
However, the 3.6 petabases represent a small fraction of the total produced; most of it is not yet in these archives.
not defined in this paper's own words; people represented in the data source
benchimol2015-record-routinely-collected-health-data
No additional RECORD items are needed to expand the STROBE requirement to “describe the setting, locations, and relevant dates, including periods of recruitment, exposure, follow-up, and data collection.” Authors should note that beyond the type of database already alluded to in the title and/or abstract, information should be provided to allow the reader to understand the content and validity of
people whose data are included in the data source
benchimol2015-record-routinely-collected-health-data
There are three levels of population hierarchy that are relevant in studies using routinely collected data and will be referred to throughout the statement. These populations include the source population, which represents that from which the database population is derived and hence about which the researchers want to make inferences; the database population, which is derived from the source popul
not defined in this paper's own words; tabular structure for which Dataset is the multidimensional equivalent
hoyer2017-xarray-labeled-arrays-datasets-python
The Dataset is xarray’s multi-dimensional equivalent of a DataFrame. It is a dict-like container of labeled arrays (DataArrays) with aligned dimensions. It is designed as an in-memory representation of a netCDF dataset. In addition to the dict-like interface of the dataset itself, which can be used to access any DataArray in a Dataset, datasets have four key properties:
not defined in this paper's own words; metadata table supporting complex vector-like columns
lawrence2013-genomic-ranges-software
Every multi-element data structure in the IRanges suite supports the storage of per-element metadata: data about data. In this case, the metadata are the annotations, and the primary data are the ranges being annotated. This includes all of the data structures for storing ranges, such as IRanges, GRanges and GRangesList . The metadata are stored in a DataFrame with as many rows as there are elemen
not defined in this paper's own words; dorsal cortex of the inferior colliculus — where AC axons are densest and where every effect in this paper is found
Blackwell2020-auditory-cortex-shapes-sound-responses-in-th
Therefore, opsin was expressed exclusively in AC-IC projecting neurons, which terminate across all regions of IC, including central nucleus (CNIC) and dorsal cortex of IC (DCIC), from which we recorded ( Figure 1D ).
Here, we refer to the external cortex and lateral nucleus of the IC as the lateral cortex (LCIC; Loftus et al., 2008 ), which includes layer three or the ventrolateral nucleus, and refer to the dorsal cortex and pericentral nucleus as the dorsal cortex of the IC (DCIC).
Wong2019-tonotopic-and-non-auditory-organization-of-t
not defined in this paper's own words; assembly route used with targeted PCR
zhou2020-a-pneumonia-outbreak-associated-wi
One sample (WIV04), collected from the bronchoalveolar lavage fluid (BALF), was analysed by metagenomics analysis using next-generation sequencing to identify potential aetiological agents. Of the 10,038,758 total reads—of which 1,582 total reads were retained after filtering of reads from the human genome—1,378 (87.1%) sequences matched the sequence of SARSr-CoV (Fig. 1a ). By de novo assembly an
not defined in this paper's own words; reference-free evaluation task
bolger2014-trimmomatic-flexible-trimmer
To illustrate the value of data preprocessing, we evaluated two different scenarios: reference-based alignment using Bowtie 2 ( Langmead and Salzberg, 2012 ) and BWA ( Li and Durbin, 2009 ) against the Escherichia coli K-12/MG1655 reference (NCBI sequence NC_000913.2 ), and de novo assembly using Velvet ( Zerbino and Birney, 2008 ), on public E.coli K-12/MG1655 datasets (SRA datasets SRX131047 and
De = fluid relaxation time over observation time of fluid flow
liao2023-viscoelasticity-collective-bacteria-motion
It is defined as De = λ a / λ b , where λ a is the fluid relaxation time and λ b is the observation time of fluid flow.
describes the effect of viscoelastic relaxation of flow patterns
liao2023-viscoelasticity-collective-bacteria-motion
not defined in this paper's own words; the alternative reading of every behavioral deficit
Drieu2019-hippocampal-sequences-during-exploration-mec
As a consequence, this alleviates the ambiguity discussed earlier, that behavioral impairments could result either from memory deficits, or from impairments in planning and decision making.
not defined in this paper's own words; the choice the accumulated evidence is supposed to produce
Erlich2015-distinct-effects-of-prefrontal-and-parietal
An intriguing possibility suggested by our results that the decision process itself–that is, the categorization of the gradually accumulated evidence into a binary choice–might be performed in the FOF, perhaps in conjunction with the superior colliculus ( Lo and Wang, 2006 ).
not defined in this paper's own words; the process the paper places PPC inside
Pho2018-task-dependent-representations-of-stimulus-a
To test whether neurons in mouse PPC similarly reflected the decision process, we varied the amount of sensory evidence from trial-to-trial by manipulating stimulus contrast.
a more revolutionary process that transforms the structures of the self, the community, and the government at any level
strazzeri2024-gender-postcolonial-studies
paying attention to, without reifying or essentialising, human-dog interactions that do not conform to Western norms of dog ownership
srinivasan2019-reorienting-rabies-research-india
the disruption or destruction of systems that support laws and practices that maintain white supremacy, promote discrimination, restrict diversity, and hinder equity
makhene2023-decolonisation-nursing-curriculum
estimating the cell-type proportions that make up a bulk tissue sample
jew2020-bulk-expression-cell-composition-estimation
We present Bisque, a tool for estimating cell type proportions in bulk expression.
the breaking up of a chemical or societal entity into its constituent parts
breslauer2023-stability-political-physical-science
not defined in this paper's own words; separating mixed measurements into their component sources
wang2016-transcriptional-heterogeneity-modelling
In our newly proved two theorems, the existence of subpopulation-specific marker genes is both a sufficient and a necessary condition for a successful blind deconvolution.
not defined in this paper's own words; the inverse operation, applied before timescale separation to remove the firing-pattern contribution
Spivak2022-deconvolution-improves-the-detection-and-qua
To focus on the contribution of deconvolution, we chose to use a single timescale separation method from this point onward.
not defined in this paper's own words; coding material against categories fixed in advance
kononowicz2015-virtual-patients-meanings
Using a deductive content analysis approach [ 23 ], we decreased the number of levels in Talbot’s classification to the two most fundamental: educational (“predominant competency”) and technological (“predominant technology”).
uses a theory, theoretical framework or conceptual model to analyse the data by operationalizing them in a coding matrix
moser2017-qualitative-research-sampling-guidance
not defined in this paper's own words; the DNN model class
ribeiro2020-ecg-deep-neural-network
Deep Neural Networks (DNNs) are models composed of stacked transformations that learn tasks by examples.
not defined in this paper's own words; the class that infers regularities and learns a representation layer by layer
schutt2017-quantum-chemical-insights-from-dee
It is common to use a carefully chosen representation of the problem at hand as a basis for machine learning 9 , 10 , 11 . For example, molecules can be represented as Coulomb matrices 7 , 12 , 13 , scattering transforms 14 , bags of bonds 15 , smooth overlap of atomic positions 16 , 17 or generalized symmetry functions 18 , 19 . Kernel-based learning of molecular properties transforms these repre
a set of midline and inferior parietal regions that activate in the absence of most external task demands
beaty2015-default-executive-network-creativity
not defined in this paper's own words; a functional brain network centred on posterior cingulate, precuneus and medial prefrontal cortex
palmqvist2017-amyloid-default-mode-network
The DMN has a core network located in the posterior cingulate cortex, precuneus, and medial prefrontal cortex
descriptive sense (how art is actually thought of) versus normative sense (how it should be thought of)
the-folk-concept-of-art
In contrast to descriptive accounts, there are views that provide a normative, or partially normative, definition of art (e.g. Gaut, 2000: p. 39). Definitions of this sort aim to describe not how art is actually thought of, but how it should be thought of, or what the concept of art really consists of (whether or not the folk agree). In this case, empirical findings may also be important for philo
not defined in this paper's own words; a specification of conditions under which something counts as art
the-folk-concept-of-art
The definition of art has been one of the central topics in philosophical aesthetics in the last century. However, finding a satisfactory definition of art turned out to be very difficult: traditional definitions of art often include objects that are not artworks or exclude objects that are, in fact, artworks. Thus, a second question has gained more and more attention in the last few decades: Is i
not defined in this paper's own words; human removal of tree and vegetation cover
kluiving2015-geoarchaeology-niche-construction
It can be argued that the infilling of the lake is a result of soil erosion upstream and inland caused by deforestation.
not defined in this paper's own words; loss of forest cover
gray2016-local-biodiversity-protected-areas
In the tropics, protection reduces deforestation 15 , 16 , 17 , loss of carbon 18 and forest fires 19 .
The number of connections of a symptom is known as degree centrality
fried2016-mental-disorders-networks-review
the number of links connected to the node
rathje2022-social-media-vaccine-hesitancy
The Delphi method is a structured approach to develop consensus among experts through a series of questionnaires and structured feedback.
orkin2021-task-shifting-task-sharing-framework
an effective iterative process with repeated rounds of evidence evaluation and voting to determine consensus among a group of experts
swedo2022-misophonia-consensus-definition
not defined in this paper's own words; socially learned direct cue-to-policy response
constant2021-representation-wars-active-inference
Central to our agenda, deontic actions are processed through different mappings in the generative model. Technically, deontic value is the likelihood of a policy given an observation lnP(o_τ —π) that grounds posterior beliefs about policies. 6 This likelihood is an empirical prior which constitutes expected free energy. The deontic value lnP(o_τ —π) effectively supplements or supplants the likelih
sensory-cue-triggered policy carrying socially admitted value
constant2021-representation-wars-active-inference
Deontic actions are actions for which the underlying policy has acquired a deontic value; namely, the shared, or socially admitted value of a policy ( Constant et al., 2019 ). A deontic action is guided by the consideration of “what would a typical other do in my situation.” For instance, stopping at the red traffic light at 4 am when no one is present may be viewed as such a deontically afforded
not defined in this paper's own words; value of doing what a typical other should do
constant2019-regimes-expectations-social-conformity
While the epistemic and pragmatic values depend on expectations about ‘what I should perceive’ and ‘where I should be’ under all plausible actions, the deontic value (or deontic affordance) of action relates to shared expectations; namely, expectations about ‘what one should do’ in a given situation – in other words, the most likely action that a typical agent (like me) would perform in a given se
not defined in this paper's own words; socially admitted likelihood of a policy given an observation
constant2021-representation-wars-active-inference
Central to our agenda, deontic actions are processed through different mappings in the generative model. Technically, deontic value is the likelihood of a policy given an observation lnP(o_τ —π) that grounds posterior beliefs about policies. 6 This likelihood is an empirical prior which constitutes expected free energy. The deontic value lnP(o_τ —π) effectively supplements or supplants the likelih
AS OPERATIONALISED HERE, A PHQ-9 SCORE OF 10 OR GREATER, on an instrument validated BEFORE the study with a published sensitivity of 88% and specificity of 88% AT THAT CUT-OFF. The threshold is inherited, not asserted, and that is the single largest methodological difference between this paper and qiu2020
ettman2020-prevalence-of-depression-symptoms
Depression symptoms in both studies were assessed using the Patient Health Questionnaire–9, a clinically validated survey with a sensitivity of 88% and a specificity of 88% at a cutoff score of 10 or higher.
not defined in this paper's own words; the outcome as named throughout - deliberately not `depression`, and the paper maintains the distinction to its last limitation
ettman2020-prevalence-of-depression-symptoms
This survey study found that prevalence of depression symptoms in the US increased more than 3-fold during the COVID-19 pandemic, from 8.5% before COVID-19 to 27.8% during COVID-19.
general (works for all logical systems) versus generic (refers to no logical system at all)
frijters-demey2023-modal-logic-aristotelian-diagrams
There are several complementary reasons for studying the modal logic of Aristotelian diagrams from the perspective of logical geometry as well as from that of modal logic itself. First of all, it nicely illustrates the expressive power of modal—and in particular, hybrid—languages to describe relational structures. Secondly, even though this is not the main concern of this paper, we will show how a
not defined in this paper's own words; what content, thematic and conceptual analysis are good for - and what this paper distinguishes from theorization
jabareen2009-building-conceptual-framework-philosophy-definitions
These methods are limited for a variety of reasons, “including lack of simple routines, time-consuming data preparation, difficulties in relating textual data to other data, and a lack of a strong theoretical basis” (Carley, 1993, p. 77). They are therefore good for providing description but not for generating theorization.
not defined in this paper's own words; differential count-data analysis using shrinkage estimates for dispersion and fold change
love2014-deseq2
We present DESeq2 , a method for differential analysis of count data, using shrinkage estimation for dispersions and fold changes to improve stability and interpretability of estimates. This enables a more quantitative analysis focused on the strength rather than the mere presence of differential expression
not defined in this paper's own words; negative-binomial differential-abundance method
mcmurdie2014-rarefying-microbiome-data-inadmissible
Fortunately, we have demonstrated that strongly-performing alternative methods for normalization and inference are already available. In particular, an analysis that models counts with the Negative Binomial – as implemented in DESeq2 [13] or in edgeR [41] with RLE normalization – was able to accurately and specifically detect differential abundance over the full range of effect sizes, replicate nu
naturally occurring and often malleable factors that prevent or enable strategy effects
lewis2018-classification-causality-implementation-mechanisms
Once specified, an implementation strategy needs to be linked to the mechanisms hypothesized to underlie its functioning. Mechanisms explain how an implementation strategy has an effect by describing the actions that lead from the administration of the strategy to the implementation outcomes (see Table 1 for definitions). Statistically speaking, mechanisms are always mediators, but mediators may n
not defined in this paper's own words; factors that obstruct or enable change and are often insufficiently differentiated
lewis2018-classification-causality-implementation-mechanisms
In this perspective piece, we propose an approach to theory development by specifying, in the form of causal pathway models, hypotheses about the causal operation of different implementation strategies in various settings, so that these hypotheses can be tested and refined. Specifically, we offer a four-step process to developing causal pathway models for implementation strategies. Toward this end
not defined in this paper's own words; cause projected separately using body-mass-index trends
mathers2006-projections-global-mortality-burden-disease
Initial regression analysis for diabetes mellitus found inconsistent trends between males and females, probably reflecting the large variations across countries and inaccuracies in recording diabetes as the underlying cause of death in many death registration systems. While overall trends for diabetes mortality showed no consistent relationship across the sexes or levels of development, the regres
not defined in this paper's own words; entity in the grey zone between disease and feature
kohler2020-the-human-phenotype-ontology-in-2021
The community uses the word phenotype with multiple meanings. The HPO defines a disease as an entity that has all four of the following attributes: an etiology (whether identified or as yet unknown) a time course a set of phenotypic features if treatments exist, there is a characteristic response to them A phenotype phenotypic feature is a part of a disease. The phenotype of an individual with a d
cross-reference tables that turn identifiers such as ITEMID into named clinical concepts
johnson2016-mimic-iii-critical-care-database
Tables prefixed with ‘D_’ are dictionary tables and provide definitions for identifiers. For example, every row of CHARTEVENTS is associated with a single ITEMID which represents the concept measured, but it does not contain the actual name of the measurement. By joining CHARTEVENTS and D_ITEMS on ITEMID, it is possible to identify the concept represented by a given ITEMID. Further detail is provi
not defined in this paper's own words; tables that cross-reference identifiers against definitions
johnson2016-mimic-iii-critical-care-database
Broadly speaking, five tables are used to define and track patient stays: ADMISSIONS; PATIENTS; ICUSTAYS; SERVICES; and TRANSFERS. Another five tables are dictionaries for cross-referencing codes against their respective definitions: D_CPT; D_ICD_DIAGNOSES; D_ICD_PROCEDURES; D_ITEMS; and D_LABITEMS. The remaining tables contain data associated with patient care, such as physiological measurements,
image charge effect
blancon2018-excitons-2d-perovskite-quantum-wells
not defined in this paper's own words; screening changes from the dielectric contrast of wells and barriers
blancon2018-excitons-2d-perovskite-quantum-wells
Furthermore, ambiguity in the determination of the exciton binding energy in layered 2D perovskites has also been imposed by the limited understanding of the role of dielectric confinement versus quantum confinement with increasing quantum well thickness 22 , 23 .
not defined in this paper's own words; a fuzzy umbrella concept, used inconsistently across disciplines, that often lumps together qualitatively different outcomes
stok2018-dietary-behavior-taxonomy
Crucially, however, “dietary behavior” and related terms such as “diet”, “nutrition”, “dietary intake”, “eating behavior”, “eating habits”, and “food choice” are fuzzy umbrella concepts, which are used inconsistently across different disciplines and research traditions, and which often include a multitude of qualitatively different outcomes lumped together.
treated in DEDIPAC as the outcome of its determinants, though upstream it would be a cause of health consequences
stok2018-dietary-behavior-taxonomy
It is important to note that, for the purposes of the DEDIPAC project, dietary behavior was viewed as the outcome of its determining factors. It should be noted that, of course, from the perspective of more upstream health consequences (such as type 2 diabetes, obesity, or heart disease), dietary behavior in turn would be considered as the cause or determinant.
feature extraction, correlational analysis, and visualization of distinguishing language use
schwartz2013-personality-language-social-media
The infrastructure of our differential language analysis. 1) Feature Extraction . Language use features include: (a) words and phrases : a sequence of 1 to 3 words found using an emoticon-aware tokenizer and a collocation filter (24,530 features) (b) topics : automatically derived groups of words for a single topic found using the Latent Dirichlet Allocation technique [72] , [75] (500 features). 2
not defined in this paper's own words; open-vocabulary comparison of language across groups
schwartz2013-personality-language-social-media
Our technique, differential language analysis ( DLA ), is based on three key characteristics. It is
the machine-learning sense (a learned denoising process across noise scales) in a paper about molecules, where the physical sense of molecular diffusion in solution is equally live; the diffusion module has nothing to do with molecules diffusing
abramson2024-alphafold3
This is achieved by a substantial evolution of the AF2 architecture and training procedure (Fig. 1d ) both to accommodate more general chemical structures and to improve the data efficiency of learning. The system reduces the amount of multiple-sequence alignment (MSA) processing by replacing the AF2 evoformer with the simpler pairformer module (Fig. 2a ). Furthermore it directly predicts the raw
the passive, untargeted and unplanned spread of new practices
nilsen2015-implementation-theories-models-frameworks
not defined in this paper's own words; unequal access to the devices and connectivity needed for online study
dhawan2020-online-learning-a-panacea-in-the-t
Ensuring digital equity is crucial in this tough time. Not all the teachers and students have access to all digital devices, internet, and Wi-Fi. Unavailability of proper digital tools, no internet connections, or iffy Wi-Fi connections can cause a lot of trouble due to which many students might lose out learning opportunities. Efforts should be taken by institutions to ensure that every student a
technology access, usage, and outcome disparities
razaq2025-digital-health-equity-concept
not defined in this paper's own words; ensuring access to digital devices, internet, Wi-Fi, and mobile-compatible educational apps
dhawan2020-online-learning-a-panacea-in-the-t
Ensuring digital equity is crucial in this tough time. Not all the teachers and students have access to all digital devices, internet, and Wi-Fi. Unavailability of proper digital tools, no internet connections, or iffy Wi-Fi connections can cause a lot of trouble due to which many students might lose out learning opportunities. Efforts should be taken by institutions to ensure that every student a
not defined in this paper's own words; fair access to digital resources and skills across social groups
cho2025-digital-literacy-dementia-caregivers
The promotion of digital equity is essential in addressing the digital disparities created by sociodemographic factors, such as income and age, which can significantly limit access to technology and opportunities for fostering digital literacy
encompasses emerging fields such as big data, genomics, and the use of advanced computing science in artificial intelligence as well as mHealth and e-health
jung2022-ehealth-literacy-older-adults
tools and services that promote health and manage illness through technology
razaq2025-digital-health-equity-concept
not defined in this paper's own words; the self a person presents in digital communications
guraya2024-professionalism-digital-context
Kleppinger and Cain [ 37 ] coined the term ‘ digital identity’ in digital communications to appease the frustration of educators due to the erosion of societal trust, individuals’ responsibility, and accountability [ 23 ].
the living 3D representation of users
zhang2022-metaverse-in-education-definition
DSP refers to a technology-enabled approach that facilitates personalized referrals to non-clinical community resources according to their needs, preferences, and geographical contexts
zhang2026-digital-social-prescribing-concept
an innovative paradigm that integrates digital technologies into traditional social prescribing frameworks to address the social determinants of health (SDOH)
zhang2026-digital-social-prescribing-concept
The resulting averages were source-localized using equivalent current dipole (ECD) modeling, where ECDs represent the average distribution of electric current within a cortical patch, giving an estimate of the location, strength, and direction of local current flow
Kohl2022-neural-mechanisms-underlying-human-auditory
not defined in this paper's own words; the current, in the same units on both sides of the comparison
Kohl2022-neural-mechanisms-underlying-human-auditory
As detailed below, HNN simulates these primary currents from the model pyramidal neurons and produces dipole outputs in units of ampere–meters (Am), allowing for direct comparisons between simulated and empirical AEFs.
not defined in this paper's own words; the single most descriptive category assigned to a compound
djoumbou-feunang2016-classyfire-automated-chemical-clas
Alternative parents are categories that describe the compound but do not have an ancestor–descendant relationship with each other or with the Direct Parent.
the single most descriptive category; `most descriptive` is explicitly acknowledged to vary by user and context
djoumbou-feunang2016-classyfire-automated-chemical-clas
However, the notion of what is most descriptive can vary from one user to another, and from one context to another. For example, a cyclic depsipeptide could be also be classified as a lactam. Because of this ambiguity, ClassyFire also displays a list of Alternative Parents (Fig. 7 ) providing a more detailed description of the chemical.
an account on which natural kind terms are non-descriptive rigid designators whose reference is secured causally
crane2021-two-approaches-natural-kinds
What I call the philosophy of language approach starts with the assumption that some version of a direct reference theory for natural kind terms is correct. A direct reference theory is an account of natural kind terms that is committed to the following: 1. Natural kind terms are not descriptive Some direct reference theorists accept a certain amount of descriptive content in order to secure refer
not defined in this paper's own words; the causal, non-descriptional account of natural kind terms
crane2021-two-approaches-natural-kinds
A philosophical approach to natural kinds is motivated by a family of questions, concerns, and assumptions that influence the nature of the accounts generated. The philosophy of language approach starts with the widely embraced “direct reference theory” of natural kind terms of the sort introduced by Kripke (1980) and Putnam (1975). It is more or less assumed that some version of a direct referenc
The light wave-vector- ( q ) dependent optical response
tokura2018-nonreciprocal-responses-quantum-materials
a route to one-way light transmission without a polarization analyzer
tokura2018-nonreciprocal-responses-quantum-materials
The directional dichroism can realize the cloaking function; contrary to the conventional Faraday rotation, it does not need the additional analyzer of the light polarization to achieve the one-way transmission of light, if the effect can be tuned so as to nearly equalize the electric-dipole and magnetic-dipole transition moments.
not defined in this paper's own words
hamilton2023-compassionate-pedagogy-neurodiversity
Considering neurodiversity as a dimension of EDI that overlaps with, but is not synonymous with, disability would be an important step towards making university communities more inclusive for their neurodivergent members.
not defined in this paper's own words; the suffix `d` - complication still present at discharge; carried ALONGSIDE the grade rather than as a grade, because persistence does not sit on the intervention ladder
katayama2016-extended-clavien-dindo-classificat
If the patient suffers from a complication at the time of discharge, the suffix “d” (for “disability”) is added to the respective grade of complication. This label indicates the need for a follow-up to fully evaluate the complication
was used for functional impairment or quality of life
zumstein2020-severe-persistent-mental-illness
not defined in this paper's own words; severity weights applied to sequelae prevalence
vos2020-global-burden-369-diseases
GBD estimates incidence, prevalence, mortality, years of life lost (YLLs), years lived with disability (YLDs), and disability-adjusted life-years (DALYs) due to 369 diseases and injuries, for two sexes, and for 204 countries and territories. Input data were extracted from censuses, household surveys, civil registration and vital statistics, disease registries, health service use, air pollution mon
health loss from a sequela on a scale from 0 (no health loss) to 1 (equivalent to death)
ferrari2024-global-burden-371-diseases
Prevalence and incidence were split into sequela-specific prevalence and incidence for non-fatal causes for which disability varied across a spectrum of severity. Sequela categories varied by non-fatal cause—for instance, categories could represent asymptomatic, mild, moderate, and severe sequelae. Estimates of the proportion of cases in each sequela category for most non-fatal causes were calcula
not defined in this paper's own words; single-action implementation strategies
powell2015-refined-compilation-implementation-strategies-eric
There are several immediate uses of this compilation. First, it provides a list of discrete strategies that can serve as “building blocks” for constructing multifaceted, multilevel implementation strategies for implementation efforts or in comparative effectiveness research [ 4 ]. Second, the core definitions and ancillary materials (see Additional file 6 ) can be used in conjunction with availabl
strategies involving one action or process, as opposed to multifaceted strategies combining several
powell2015-refined-compilation-implementation-strategies-eric
In response to those limitations, Powell et al. [ 10 ] proposed a consolidated compilation of 68 discrete (as opposed to multifaceted) implementation strategies and definitions based upon a review of the health and mental health literatures. While the review was conducted by an interdisciplinary team of health services researchers, the development of the compilation was not informed by a wide-rang
not defined in this paper's own words; replicable strategy components usable alone or in combination
lewis2018-classification-causality-implementation-mechanisms
In our case example, training is a strategy that is underspecified. We adapted procedures from Michie et al. ( 26 ) to guide strategy specification recommending that each strategy be assessed for whether it: (1) aims to promote the adoption, implementation, sustainment, or scale-up of an evidence-based practice; (2) is a proposed “active ingredient” of adoption, implementation, sustainment, or sca
not defined in this paper's own words; separation from measures of other constructs
boateng2018-best-practices-developing-validating-scales
Construct validity is the “extent to which an instrument assesses a construct of concern and is associated with evidence that measures other constructs in that domain and measures specific real-world criteria” ( 2 ). Four indicators of construct validity are relevant to scale development: convergent validity, discriminant validity, differentiation by known groups, and correlation analysis.
not defined in this paper's own words; the requirement that the new construct correlate with its neighbours BUT NOT SO HIGHLY that it stops being a separate thing - a bound specified in advance
bruder2013-measuring-individual-differences-i
At the same time, we expect that none of the correlations will reach a level that would cast doubt on the viability of conspiracy mentality as an independent construct.
a trivial sense in which it is already implied by labeling and stereotyping
andersen2022-definition-of-stigma
But if this is what we mean by discrimination, then it seems redundant as a component in the definition, because it is already implied by the labeling and stereotyping.
discrimination that is morally (or juridically) wrong, or objectionable
andersen2022-definition-of-stigma
not defined in this paper's own words; ability to separate events from non-events
rajkomar2018-scalable-accurate-deep-learning-electronic-health-records
If a clinical team had to investigate patients predicted to be at high risk of dying, the rate of false alerts at each point in time was roughly halved by our model: at 24 h, the work-up-to-detection ratio of our model compared to the aEWS was 7.4 vs 14.3 (Hospital A) and 8.0 vs 15.4 (Hospital B). Moreover, the deep learning model achieved higher discrimination at every prediction time-point compa
not defined in this paper's own words; downstream outcomes proposed after host-microbe disturbance
rinninella2019-what-is-the-healthy-gut-microbiota
disturbances to the delicate host–microbe relationship may disrupt the development of the immune system, which may in turn result in diseases
not defined in this paper's own words; outcome microbial diversity is proposed to help prevent
berg2020-microbiome-definition-re-visited-o
The division of microorganisms into beneficial, pathogenic, and neutral based on microbial interactions with their hosts is a part of the widely cited microbiome definition by Lederberg and McCray [ 42 ]. According to their interpretation, antagonistic coevolution includes host-parasite interactions, while mutualistic coevolution is present when positive interactions prevail (Fig. 6 ). Such positi
not defined in this paper's own words; alterations cutting across diagnostic categories
ouwersloot2020-reintroducing-consciousness-in-psychopatholo
Alterations in consciousness are among the most common transdiagnostic psychopathological symptoms. Therefore clinical practice would benefit from a clear conceptual framework that guides the recognition, comprehension, and treatment of consciousness disorders. However, contemporary psychopathology lacks such a framework. We describe how pathology of consciousness is currently being addressed in c
not defined in this paper's own words; clinical states in which residual wakefulness or awareness must be assessed
farisco2018-large-scale-brain-simulation-and-disorders-o
In this paper we investigate the plausibility of simulation technologies for emulation of consciousness and the potential clinical impact of large-scale brain simulation on the assessment and care of disorders of consciousness (DOCs), e.g., Coma, Vegetative State/Unresponsive Wakefulness Syndrome, Minimally Conscious State.
not defined in this paper's own words; coma and related states with impaired awareness and uncertain direction of criticality deviation
gervais2023-a-scoping-review-for-building-a-criticality
Even though criticality could be an interesting way to refine the diagnosis and prognosis of DOC, a very restricted number of studies have investigated this subject ( Table 5 ). Most studies regrouped DOC as a single category, all of which showed a deviation from criticality using neuronal avalanches ( Fekete et al., 2021 ), pair correlation function ( Kim M. et al., 2021 ), phase lag entropy ( Le
as a nuisance parameter to be estimated accurately, since bad estimates corrupt every downstream test
love2014-deseq2
If used directly, these noisy estimates would compromise the accuracy of differential expression testing.
not defined in this paper's own words; the parameter carrying within-group variability between replicates, whose estimation is the paper's central difficulty
love2014-deseq2
Accurate estimation of the dispersion parameter α i is critical for the statistical inference of differential expression.
not defined in this paper's own words; intentional-person explanation of behavior
petrescu2016-public-acceptability-nudging-obesity
The third aim of the present study was to explore the predictors of public acceptability of nudging. To date, studies that have assessed public acceptability of government interventions to improve population health reveal several predictors. These include: perceived effectiveness of each intervention, with acceptability increasing with effectiveness [ 17 ]; the belief that lack of willpower is res
people typically allude to an agent’s internal characteristics, such as her skills, desires, or personality, when attempting to explain why and how she behaves
hannikainen2019-determinism-moral-responsibility
not defined in this paper's own words; distribution and discovery of scientific work
munafo2017-manifesto-reproducible-science
Diversifying peer review. For most of the history of scientific publishing, two functions have been confounded — evaluation and dissemination. Journals have provided dissemination via sorting and delivering content to the research community, and gatekeeping via peer review to determine what is worth disseminating. However, with the advent of the internet, individual researchers are no longer depen
not defined in this paper's own words; the active spread of new practices to a target audience through planned strategies
nilsen2015-implementation-theories-models-frameworks
Implementation is part of a diffusion-dissemination-implementation continuum: diffusion is the passive, untargeted and unplanned spread of new practices; dissemination is the active spread of new practices to the target audience using planned strategies; and implementation is the process of putting to use or integrating new practices within a setting [ 16 , 17 ].
Distributed representation has proved one of the most successful approaches in machine learning [ 6 – 10 ]. The main idea in this approach is encoding and storing information about an item within a system through establishing its interactions with other members.
asgari2015-protvec
not defined in this paper's own words; desired property of the autoencoder code
voulodimos2018-deep-learning-for-computer-vision
The goal is for the representation (or _code_) **r**( **x**) to be a distributed representation that manages to capture the coordinates along the main variations of the data, similarly to the principle of Principal Components Analysis (PCA). Given that **r**( **x**) is not lossless, it is impossible for it to constitute a successful compression for all input **x**. The aforementioned optimization
developmental language disorder
hamilton2023-compassionate-pedagogy-neurodiversity
language disorder `with no known differentiating condition` - severe enough to interfere with daily life or educational progress, with a poor prognosis, and explicitly NOT requiring a verbal/nonverbal discrepancy
bishop2017-phase-2-of-catalise-a-multinationa
We achieved at least 78% agreement for 19 of 21 statements within two rounds of ratings. These were collapsed into 12 statements for the final consensus reported here. The term ‘Language Disorder’ is recommended to refer to a profile of difficulties that causes functional impairment in everyday life and is associated with poor prognosis. The term, ‘Developmental Language Disorder’ ( DLD ) was endo
not defined in this paper's own words; developmental language disorder - language disorder with no known differentiating biomedical condition
bishop2017-phase-2-of-catalise-a-multinationa
Figure 2 Venn diagram illustrating relationship between different diagnostic terms. DLD is nested within the broader SLCN category
deoxyribonucleic acid (DNA)
chevizovich2020-nonlinear-dna-physics-review
not defined in this paper's own words; nucleotide sequence input
price2010-fasttree-approximately-maximum-likelihood-trees
Inferring evolutionary relationships, or phylogenies, from families of related DNA or protein sequences is a central method in computational biology. Sequence-based phylogenies are widely used to understand the evolutionary relationships of organisms and to analyze the functions of genes.
important types of epigenetic regulation
liu2019-deepmod-nanopore-dna-modifications
modified versions of standard nucleotides in a DNA molecule through the addition of chemical groups
liu2019-deepmod-nanopore-dna-modifications
not defined in this paper's own words; abbreviation for DNA methylation age
horvath2013-dna-methylation-age-human-tissues
An increasing body of evidence suggests that many manifestations of aging are epigenetic [ 1 , 2 ]. This article focuses on one particular type of epigenetic control: cytosine-5 methylation within CpG dinucleotides (also known as DNA methylation). Age-related DNA hypomethylation has long been observed in a variety of species, including salmon [ 3 ], rats [ 4 ], and mice [ 5 ]. More recent studies
predicted age from the penalized-regression methylation model
horvath2013-dna-methylation-age-human-tissues
Using the training data sets, I used a penalized regression model (implemented in the R package glmnet [ 45 ]) to regress a calibrated version of chronological age on 21,369 CpG probes that a) were present both on the Illumina 450K and 27K platform and b) had fewer than 10 missing values. The alpha parameter of glmnet was chosen to 0.5 (elastic net regression) and the lambda value was chosen using
deep neural network
melo2023-deep-learning-ecg-brugada
not defined in this paper's own words; descriptor-based deep neural network
jiang2021-graph-neural-networks-molecular-representation
The present study attempts to give a comprehensive evaluation of descriptor-based and graph-based models on 11 public datasets with different property endpoints. Four ML algorithms were used to develop the descriptor-based models, including SVM, extreme gradient boosting (XGBoost), RF and deep neural networks (DNN). In order to better represent the chemical and structure features of the molecules
a neural network with input, output, and multiple hidden layers
jiang2021-graph-neural-networks-molecular-representation
As one of the typical DL algorithms, DNN has an input layer, an output layer, and many hidden layers. DNN is composed of many individual neurons [ 16 , 25 ]. Each neuron in DNN aggregates information from its connected neurons and then the aggregated information is activated by a non-linear activation function. Such manifestations mimick the behavior of biological neural networks. All the operatio
dissolved organic carbon
romera-castillo2018-plastics-dissolved-organic-carbon
the fraction of organic matter passing through a 0.2-0.7 µm filter
romera-castillo2018-plastics-dissolved-organic-carbon
DOC is operationally defined as the fraction of organic matter passing through a 0.2–0.7 µm filter 26 .
not defined in this paper's own words; ambiguous in Terminology between the knowledge area itself and the categories of concepts within it - and the choice changes the internal structure
faberbentez2009-cognitive-shift-terminology-specialized-translation
Regarding conceptual domains, in Terminology there seem to be two views on the matter, which are not necessarily incompatible with each other. A domain sometimes refers to the knowledge area itself, and other times, refers to the categories of concepts within the specialized field. Evidently, whether a domain is defined as one or the other has dramatic consequences for its internal structure.
not defined in this paper's own words; concept, attribute, or unobserved behavior targeted for measurement
boateng2018-best-practices-developing-validating-scales
The first step is to articulate the domain(s) that you are endeavoring to measure. A domain or construct refers to the concept, attribute, or unobserved behavior that is the target of the study ( 25 ). Therefore, the domain being examined should be decided upon and defined before any item activity ( 2 ). A well-defined domain will provide a working knowledge of the phenomenon under study, specify
The added dimension axis is named dominance ranging from submissive to dominant, which reflects the control ability of the human in a certain emotion.
shu2018-a-review-of-emotion-recognition-using-physiological
not defined in this paper's own words; the two effects being explained
Kohl2022-neural-mechanisms-underlying-human-auditory
We also applied the modeling framework to develop and test predictions on neural mechanisms underlying AEF differences in the left and right hemispheres, as well as in hemispheres contralateral and ipsilateral to the presentation of the auditory stimulus. We found that increasing the strength of the excitatory synaptic cortical feedback inputs to supragranular layers simulates the commonly observe
not defined in this paper's own words; factors that set the strength of the greenhouse effect
foster2017-future-climate-forcing-420-million-years
However, at the temperatures and pressures typical of the Earth's surface, water vapour and clouds act as feedbacks rather than drivers of the greenhouse effect
plant and microbial diversity treated as drivers of soil multifunctionality by assumption, since the study is correlative
hu2021-aridity-biodiversity-soil-multifunctionality
Therefore, although our observational study is correlative in nature, and hence any causal hypotheses should be made with caution, we find it reasonable to assume that both the plant and microbial diversity can be drivers of soil multifunctionality.
a regularization technique in which filters are randomly turned off during training
vanvalen2016-deep-learning-live-cell-imaging
regularization technique
voulodimos2018-deep-learning-for-computer-vision
the expressions of a large number of active genes are marked as zeros
wang2021-scgnn-graph-neural-network-single-cell
not defined in this paper's own words; the rule that data and code should not be duplicated
wilson2014-best-practices-scientific-computing
Anything that is repeated in two or more places is more difficult to maintain. Every time a change or correction is made, multiple locations must be updated, which increases the chance of errors and inconsistencies. To avoid this, programmers follow the DRY Principle [49] , for “don't repeat yourself,” which applies to both data and code.
one authoritative representation for each datum and reusable rather than copied code
wilson2014-best-practices-scientific-computing
For data, this maxim holds that every piece of data must have a single authoritative representation in the system (4a) . Physical constants ought to be defined exactly once to ensure that the entire program is using the same value; raw data files should have a single canonical version, every geographic location from which data has been collected should be given an ID that can be used to look up it
Diagnose sexuelle probabiliste
yim2025-evolutionary-theory-forensic-anthropology
not defined in this paper's own words; digital social prescribing
zhang2026-digital-social-prescribing-concept
Digital Social Prescribing (DSP) represents an innovative paradigm that integrates digital technologies into traditional social prescribing frameworks to address the social determinants of health (SDOH)
not defined in this paper's own words; how well activity is retained over long testing
ling2016-cobalt-oxide-nanorods-electrocatalysis
This excellent durability originates from direct growth of SC CoO NRs on the CFP substrate to avoid aggregating and detaching problems, which are usually encountered in other faceted catalysts 49 .
not defined in this paper's own words; persistence of responses after primary infection
roltgen2020-defining-the-features-and-duration
Current information on the role of antibodies in viral clearance and modulation of disease severity as well as the durability of these responses following primary infection is limited or controversial. Improved understanding of humoral immunity to SARS-CoV-2 is needed to inform strategies for vaccination and the use of therapeutics in the form of neutralizing antibodies or convalescent plasma. Rep
not defined in this paper's own words; time spent with a contacted person
mossong2008-social-contacts-mixing-infectious-disease
Diaries recorded basic sociodemographic information about the participant, including employment status, level of completed education, household composition, age, and sex. Participants were assigned a random day of the week to record every person they had contact with between 5 a.m. and 5 a.m. the following morning. Participants were instructed to record contacted individuals only once in the diary
referred either to the duration of symptoms, treatment or disability
zumstein2020-severe-persistent-mental-illness
The ‘dynamic process’ is instead described as the interaction of a constellation of variables that allow the reduction of the impact with the risk conditions and thus effectively dealing with the adverse condition.
sisto2019-towards-a-transversal-definition-of-psychological-resilience
accepts that resilience may fluctuate in the face of different challenges and stages of the life course and, in turn, is modifiable
mckenna2022-resilience-family-caregivers
decisive for fashion and electronics, not for food
liu2020-online-food-shopping
On the contrary, the success of fashion products and electronics is dependent on how online customers perceive their e-commerce platforms ( Huete-Alcocer, 2017 ).
the set of technologies designed to help online businesses to manage their marketing, sales, and operations
liu2020-online-food-shopping
evidence provided by digital means, attitudes and behaviours reflects the traditional models of professionalism [ 54 ]
cao2023-nursing-professionalism-concept
‘the attitudes and behaviours (which may occur in private settings) reflecting traditional professionalism paradigms manifested through digital media’
guraya2024-professionalism-digital-context
Early Fusion When different features are integrated into a single feature set before classifying process, the fusion is called as early fusion.
shu2018-a-review-of-emotion-recognition-using-physiological
Early fusion alters the structure of the input layer of the VGG network so that 4 channels, rather than 3, are provided.
sa2016-deepfruits-a-fruit-detection-system-using-deep
not defined in this paper's own words; checkpoint selection on a weighted average of metrics
abramson2024-alphafold3
Figure 2d shows that, during initial training, the model learns quickly to predict the local structures (all intrachain metrics go up quickly and reach 97% of the maximum performance within the first 20,000 training steps), while the model needs considerably longer to learn the global constellation (the interface metrics go up slowly and protein–protein interface LDDT passes the 97% bar only after
not defined in this paper's own words; validation-controlled neural training halt
jiang2021-graph-neural-networks-molecular-representation
In the first stage, the same training, validation and test sets at a ratio of 8:1:1 used by Attentive FP were also used in our study (Additional file 1 generated from the source code provided in the github). For the assessed ML algorithms, the prediction on the validation set was used to guide the optimization of hyper-parameters. The Tree of Parzen Estimators (TPE) algorithm was used to identify
evidence based medicine
boeykens2022-goal-oriented-care
evidence-based medicine
zanting2024-cultural-diversity-conceptual-analysis
analysis of how mind and environment jointly produce rational behavior
hausman2015-evidence-libertarian-paternalism
More generally, the analysis of the relation between mind and environment—here between speaker and listener—is called the study of ecological rationality (Gigerenzer and Selten 2001 ).
not defined in this paper's own words; fit between cognition and environmental structure
hausman2015-evidence-libertarian-paternalism
The real question is one of ecological rationality: to specify the environmental structures in which a given heuristic is likely more accurate than competing methods.
fluxes of matter and energy between trophic levels, and nutrient stocks and transformation rates
hu2021-aridity-biodiversity-soil-multifunctionality
not defined in this paper's own words; ecological processes supported by insects
hallmann2017-flying-insect-biomass-decline-protected-areas
Loss of insects is certain to have adverse effects on ecosystem functioning, as insects play a central role in a variety of processes, including pollination [ 1 , 2 ], herbivory and detrivory [ 3 , 4 ], nutrient cycling [ 4 ] and providing a food source for higher trophic levels such as birds, mammals and amphibians. For example, 80% of wild plants are estimated to depend on insects for pollinatio
not defined in this paper's own words; comparison method whose shrinkage strength depends on a user-adjustable prior-degrees-of-freedom parameter
love2014-deseq2
The approach of DESeq2 differs from that of edgeR [ 3 ], as DESeq2 estimates the width of the prior distribution from the data and therefore automatically controls the amount of shrinkage based on the observed properties of the data. In contrast, the default steps in edgeR require a user-adjustable parameter, the prior degrees of freedom , which weighs the contribution of the individual gene estim
not defined in this paper's own words; negative-binomial sequencing-count analysis package
mcmurdie2014-rarefying-microbiome-data-inadmissible
Despite its current popularity in microbiome analyses rarefying biological count data is statistically inadmissible because it requires the omission of available valid data. This holds even if repeated rarefying trials are compared for stability as previously suggested [17] . In this article we demonstrate the applicability of a variance stabilization technique based on a mixture model of microbio
not defined in this paper's own words; building public understanding and risk competence
hausman2015-evidence-libertarian-paternalism
Education, by contrast, aims at “a general knowledge among the people” (see introductory epigram), and would require measures to make the public statistically literate and to enforce transparent information policies so that citizens can make informed decisions.
not defined in this paper's own words; low-intrusion informational policy intervention
petrescu2016-public-acceptability-nudging-obesity
Levels of acceptability for four of the five interventions did not differ significantly between the UK and USA samples. Reducing portion Size was less accepted in the USA than the UK sample. Overall, acceptability was lowest for the intervention involving a high-level of intrusion, i.e. Taxation, and highest for the intervention presenting a low level of intrusion, i.e. Education. Contrary to pred
exclusive economic zones
halpern2015-cumulative-human-impacts-ocean
not defined in this paper's own words; national or equivalent maritime zones
pauly2016-catch-reconstructions-global-marine-fisheries
What is covered here are both ‘coastal' waters, defined as the waters within the EEZ ( Supplementary Fig. 1 ) that countries have claimed since this was allowed under the United Nations Convention on the Law of the Sea (UNCLOS), or which they could claim under UNCLOS rules, but have not (such as many countries around the Mediterranean), and the open oceans, or High Seas, that is, the waters beyond
not defined in this paper's own words; variables modifying effects that should be clearly defined in a report
vonelm2007-strobe
Clearly define all outcomes, exposures, predictors, potential confounders, and effect modifiers. Give diagnostic criteria, if applicable
not defined in this paper's own words; conditions that alter whether or how strongly a strategy works
lewis2018-classification-causality-implementation-mechanisms
First, it is important to ensure that implementation strategies are appropriately specified. Some strategies in published compilations are well defined but may not be specified in terms of its core component that can have a reliable and measureable impact. Second, linkages between strategies and mechanisms need to be generated. Existing compilations do not offer mechanisms by which strategies act,
not defined in this paper's own words; controlled strength of simulated biological difference
mcmurdie2014-rarefying-microbiome-data-inadmissible
Simulation B is a simple example of microbiome experiments in which the goal is to detect microbes that are differentially abundant between two pre-determined classes of samples. This experimental design appears in many clinical settings (health/disease, target/control, etc.), and other settings for which there is sufficient a priori knowledge about the microbiological conditions, and we want to e
not defined in this paper's own words; the magnitude assigned to a targeted effect hypothesis
greenland2016-statistical-tests-p-values-confidence-intervals-power
We can vary the test hypothesis while leaving other assumptions unchanged, to see how the P value differs across competing test hypotheses. Usually, these test hypotheses specify different sizes for a targeted effect; for example, we may test the hypothesis that the average difference between two treatment groups is zero (the null hypothesis), or that it is 20 or −10 or any size of interest. The e
a single temperature that absorbs both thermal vibration and static bond-length disorder, because the two are statistically indistinguishable
wang2024-scaling-laws-lattice-distortions
The concept of an effective temperature, denoted as T eff , encapsulates the notion that structural disorder arising from thermal vibrations and local static lattice distortions is statistically indistinguishable.
not defined in this paper's own words; the temperature an equilibrium bath would need to produce the observed fluctuations
maggi2017-active-bath-fluctuation-dissipation
This can be translated in an effective temperature that, over long timescales, is higher than the bath temperature:
not defined in this paper's own words; an individual-level RE-AIM dimension concerning intervention effects
glasgow2019-re-aim-planning-evaluation-framework
The RE-AIM dimensions include reach (R), effectiveness (E), and maintenance (M)–which operate at the individual-level (i.e., those who are intended to benefit), and adoption (A), implementation (I), and maintenance (M), which focus on the staff and setting levels. Setting-level RE-AIM factors are often multi-level and address context and external validity issues important to population impact. For
not defined in this paper's own words; population-level intervention benefit
adams2016-population-interventions-agency
Population interventions like Change4Life that focus on providing advice, guidance, and encouragement rely heavily on individuals being able and motivated to engage with this advice, guidance, and encouragement. These types of interventions have been described as highly “agentic” [ 7 , 8 ]: recipients must use their personal resources, or “agency,” to benefit. The effectiveness and equity of these
how close protected sites come to pristine sites in local biodiversity, on a 0-100% scale
gray2016-local-biodiversity-protected-areas
On this scale, we estimate that on average the global protected area network is 41% (95% CI: 2 to 81%) effective at retaining within-sample species richness
not defined in this paper's own words
melo2023-deep-learning-ecg-brugada
Normal physiological variations often obscure visible signs of this and related life-threatening channelopathies in conventional electrocardiograms (ECGs).
not defined in this paper's own words in this sentence
dang2023-human-centred-ai-mobile-health
Sensors in wearable and mobile devices such as accelerometers, electrocardiograms (ECGs), global positioning systems (GPSs), gyroscopes and microphones monitor our location, sleep, steps, eating and working habits in the real world.
not defined in this paper's own words; the method giving the charge transfer resistance
hao2022-electronegativity-high-entropy-alloy-electrocatalysts
The remarkable electrocatalytic activity is further supported by electrochemical impedance spectroscopy (EIS) performed at an overpotential of 50 mV.
not defined in this paper's own words; the method used to separate ionic from electronic conduction
feig2018-conductive-interpenetrating-network-hydrogels
To decouple ionic and electronic conductivities, we saturated C-IPN gels in 1 × phosphate-buffered saline (PBS) solution and characterized their impedance using electrochemical impedance spectroscopy (EIS).
not defined in this paper's own words; online index of arousal during reading
dijkstra2016-pronouns-literary-reading-perspective
However, despite the substantial body of narrative theory and experimental evidence from psychological studies with personal pronouns, it remains unclear how the choice of personal pronouns influences experiential aspects of literary reading such as immersion and appreciation of a story. In the present study we investigated how story immersion is affected by choice of pronoun referring to the main
not defined in this paper's own words; skin-conductance index of arousal
stephens2011-swearing-euphemisms-linguistic-relativity
In order to test the power of euphemisms to reduce emotional distress we focused on the two most offensive swear words in English and introduced euphemisms that were defined to have the same semantic content. The question of interest is whether they have the same emotional impact when read aloud. If euphemisms can blunt the impact of the most strongly emotionally charged words when their meaning i
not defined in this paper's own words; a noninvasive method that records “neural signals from outside the brain”
forenzo2024-deep-learning-bci-continuous-tracking
Noninvasive brain recording methods such as electroencephalography (EEG) record neural signals from outside the brain and do not require any invasive procedures.
not defined in this paper's own words; recording of the brain's electrical activity from electrodes
berendt2015-veterinary-epilepsy-definition
Typically electroencephalography (EEG) is an impractical tool in animals and so cannot contribute to a general classification scheme—in contrast to the situation in human medicine.
not defined in this paper's own words; imaging method for viral particles
zhou2020-a-pneumonia-outbreak-associated-wi
We next successfully isolated the virus (called 2019-nCoV BetaCoV/Wuhan/WIV04/2019) from both Vero E6 and Huh7 cells using the BALF sample of patient ICU-06. Clear cytopathogenic effects were observed in cells after incubation for three days (Extended Data Fig. 6a, b ). The identity of the strain WIV04 was verified in Vero E6 cells by immunofluorescence microscopy using the cross-reactive viral N
not defined in this paper's own words; the instrument that reached the same 1% figure more than thirty years earlier, by physically looking
salzman2013-cell-type-specific-features-of-cir
qPCR quantification and extensive analysis of RNA-Seq data has allowed us to estimate that the number of circular RNA molecules is roughly 1% of the number of poly(A) molecules in the cells we investigated. This estimate is remarkably similar to a report published more than 30 years ago, which found physical evidence of circular RNA by examining cellular RNA by electron microscopy
not defined in this paper's own words; how easily electrons move through the material
lei2016-tin-quantum-sheets-co2-reduction
Moreover, the presence of highly-conductive graphene could enhance the overall electronic conductivity, which was confirmed by their lowest interfacial charge-transfer resistance in Fig. 5c
not defined in this paper's own words; electrical transport property varied by termination and intercalation
hart2019-control-of-mxenes-electronic-properties-through-termination
Before providing a detailed analysis of our in situ heating and biasing experiments, we first summarize our two main findings. First, we observed transitions from semiconductor-like to metallic behavior in Ti 3 CNT x and Mo 2 TiC 2 T x after the annealing-induced loss of intercalated species. These transitions reveal the intra-flake metallicity of Ti 3 CNT x and Mo 2 TiC 2 T x and demonstrate that
growth of total duct length along its winding path, not the straight-line advance of the front
paine2016-mammary-ductal-elongation-model
This is misleading language born from a failure to make the distinction between elongation rate and displacement rate and leads to a misunderstanding of the true nature of ductal development.
indicates how much an object is stretched along its main axis
hajiabadi2022-deep-learning-microscopy-reconstruction
different behavioral, physiological, or cognitive processes that one uses to regulate emotional experiences and expressions
wang2021-positive-psychology-language-learning
refers to how individuals influence which emotions they have, when they have them, and how they experience and express them
stedham2019-mindfulness-trust-leadership
not defined in this paper's own words; causal spread of expressed affect across social ties
coviello2014-emotional-contagion-social-networks
Here, we propose an alternative method for detecting emotional contagion in massive social networks that is based on instrumental variables regression, a technique pioneered in economics [23] .
not defined in this paper's own words; felt uptake of the emotion expressed by art
mastandrea2019-art-wellbeing-aesthetic-emotion
While listening to sad music, one may experience the feeling of sadness through the mechanism of emotion contagion and appreciate the beauty of the piece by judging it aesthetically positive ( Juslin, 2013 ).
not defined in this paper's own words; positive or negative emotion words in status updates
coviello2014-emotional-contagion-social-networks
To measure emotional expression, we use “status updates” (also called “posts”) which are undirected text-based messages that a user's social contacts (Facebook friends) may view on their own News Feed.
not defined in this paper's own words; positive or negative language in lyrics
brand2019-cultural-evolution-emotion-song-lyrics
We analysed the emotional content of song lyrics in over 160,000 songs spanning the years 1965–2015. We found that the frequency of negative words increased over time, whilst the frequency of positive words decreased over time, and asked whether these patterns could be attributed to cultural transmission biases such as success bias, prestige bias, content bias or unbiased transmission. In the bill
Emotional loneliness originates from the absence of an intimate figure or a close emotional attachment.
vantilburg2021-social-emotional-existential-loneliness
arises from the absence or loss of meaningful relationships, possibly of a primary attachment figure, such as a spouse
mansfield2021-loneliness-conceptual-review
not defined in this paper's own words; irritation, anger, or disgust elicited by a trigger
schroder2020-misophonia-phenomenology-large-sample
Our detailed investigation of triggers leads to new conclusions. Approximately all subjects in our sample report eating sounds as a trigger (96%) and the majority reports nasal or breathing sounds as a trigger (85%). Combined, all subjects report either oral or nasal sounds as a trigger. Therefore, we propose other triggers can be a part of the condition, but an emotional reaction to oral or nasal
not defined in this paper's own words; the sixth component that Link, Yang, Phelan and Collins added to the 2001 definition in 2004
andersen2022-definition-of-stigma
Interestingly, in “Measuring Mental Illness Stigma” from 2004, Link, Yang, Phelan, and Collins expand the 2001 definition by adding a component of (individual negative) emotional reaction (on the stigma).
not defined in this paper's own words; observational basis for causal claims with boundary conditions
lewis2018-classification-causality-implementation-mechanisms
Our perspective draws upon Agile Science ( 13 , 14 )—a new method for developing and studying behavioral interventions that focuses on intervention modularity, causal modeling, and efficient evaluations to generate empirical evidence with clear boundary conditions (in terms of population, context, behavior, etc.) to maximize knowledge accumulation and repurposing. Agile Science has been used to in
not defined in this paper's own words; research basis used to revise and justify reporting items
schulz2010-consort
Efforts to improve the reporting of randomised controlled trials accelerated in the mid-1990s, spurred partly by methodological research. Researchers had shown for many years that authors reported such trials poorly, and empirical evidence began to accumulate that some poorly conducted or poorly reported aspects of trials were associated with bias [14] Two initiatives aimed at developing reporting
development of the ability to take care of oneself
jang2020-staff-family-partnership-long-term-care
the process or outcome of an individual receiving certain authority and resources to control their living abilities
yan2022-resilience-stroke-patients
However, a key aspect of empowerment is that the enhancement of one’s ability to change their situation is brought about through external assistance
elements, which foster patient-centered care
scholl2014-patient-centeredness-concept
not defined in this paper's own words; facilitating determinants treated as independent variables affecting implementation outcomes
nilsen2015-implementation-theories-models-frameworks
Determinant frameworks describe general types (also referred to as classes or domains) of determinants that are hypothesized or have been found to influence implementation outcomes, e.g. health care professionals’ behaviour change or adherence to a clinical guideline. Each type of determinant typically comprises a number of individual barriers (hinders, impediments) and/or enablers (facilitators),
not defined in this paper's own words; embodied cognitive science centered on autonomous enactment
popova2020-enactivism-ecological-psychology-agency
As acknowledged by Varela et al. (1991) and Thompson (2007) , early enactivism was mainly formulated as a reaction against classical, first-generation Cognitivism, which was based on the prevalent-at-the-time computational theory of mind ( Thompson, 2007 , pp. 4–8). Early enactivism therefore was explicitly framed as a rejection of information processing and symbolic representations that dominated
not defined in this paper's own words; sensorimotor and self-organizing account of embodied cognition
baggs2020-ecological-psychology-enactivism-action
The enactive approach is based on work by Maturana and Varela ( 1988 ), and was succintly articulated for the wider audience in the early 1990's, in the germinal book The embodied mind: Cognitive science and human experience by Varela et al. ( 1993 ). In this book Varela et al. launched their own challenge to the cognitivist paradigm, with the core idea that cognition is an embodied, lived process
acquisition of culturally evolved skills through personal and sub-personal learning
fabry2019-mind-wandering-reader-predictive-enculturation
Competence in reading and other cognitive practices is the result of enculturation . One can approach enculturation on the personal level (by considering explicit training and instruction in reading) and on the sub-personal level (by considering readers' brain-based and ocular-motor processes going on as they learn to read). On a personal level of analysis, enculturation is realized by cultural le
not defined in this paper's own words; lifelong channeling of dispositions through group contexts
smith2019-cultures-persons-individual-variability
Over the course of this developmental process, the individual becomes less dependent on others for survival and better able to exercise greater agency in choosing his or her proximal cultural groupings and the micro-cultures of relationships within these proximal cultures ( Bandura, 2001 ). This general process is individualized and sorted ( Fowler et al., 2011 ) at each stage by the genetic profi
not defined in this paper's own words; multiple forecasts from varied initial conditions or model physics
rasp2020-weatherbench
One important aspect that is not currently addressed by this benchmark is probabilistic forecasting. Because of the chaotic evolution of the atmosphere, it is very important to also have an estimate of the uncertainty of a forecast. In physical NWP this is done by running several forecasts, called an ensemble, from slightly different initial conditions and potentially with different or stochastic
the statistics/ML sense (combine models into one aggregated prediction) versus the compression-ensemble sense (the full vector of complexity estimates is itself the output)
epjds2023-compression-ensembles
Our approach is also conceptually related to “ensemble methods” in statistics and machine learning [46], but instead of a single aggregated prediction, the useful output here is the full vector of complexity estimates. Approaches using ensembles of various metrics have also been proposed in linguistics for language complexity [47] and economics for tax system complexity [48].
not defined in this paper's own words; combination of outputs from three architectures
rajkomar2018-scalable-accurate-deep-learning-electronic-health-records
Patient records vary significantly in length and density of data points (e.g., vital sign measurements in an intensive care unit vs outpatient clinic), so we formulated three deep learning neural network model architectures that take advantage of such data in different ways: one based on recurrent neural networks (long short-term memory (LSTM)), 80 one on an attention-based TANN, and one on a neur
not defined in this paper's own words; multiple randomized trunk passes used in the CASP14 configuration
jumper2021-highly-accurate-protein-structure-prediction-alphafold
Inference regimen We inference the five trained models and use the predicted confidence score to select the best model per target. Using our CASP14 configuration for AlphaFold, the trunk of the network is run multiple times with different random choices for the MSA cluster centres (see Supplementary Methods 1.11.2 for details of the ensembling procedure). The full time to make a structure predicti
drift between teaching and research; transformation of the research/teaching nexus to the research/innovation nexus
mckinley2020-teaching-research-nexus
not defined in this paper's own words; the internal reference variable (set point) of the arousal system
a-functional-model-of-kitsch-and-art-linking
The arousal system monitors and regulates an individual’s current level of activation. Arousal refers to an unspecific activation pattern of the sympathetic nervous system that accompanies “interest, fascination, curiosity, as well as feelings of alarm or fear” ( Schneider, 2001 , p. 10122). It is based on the assumption that any unfamiliar event will provoke a (startle) response: When we walk the
Episodic memory : “involves the ability to learn, store, and retrieve information about unique personal experiences that occur in daily life. These memories typically include information about the time and place of an event, as well as detailed information about the event itself
Camina2017-the-neuroanatomical-neurophysiological-and-p
not defined in this paper's own words; memory for events, with time and place
Camina2017-the-neuroanatomical-neurophysiological-and-p
Explicit memory consists of episodic memory (time-related events) and semantic memory (concepts and meanings).
a wrong done to someone specifically in their capacity as a knower
kidd2017-epistemic-injustice-illness
privilege some agents' perspectives on recovery while rejecting those of others as epistemically relevant
friedman2021-concept-of-recovery-meanings
a philosophical approach to inquiry pertaining to the nature and conditions of knowledge
guraya2024-professionalism-digital-context
concerned with how the concept is defined and differentiated within the literature
smith2022-parental-sleep-sick-child
As previously reported ( Govorunova et al., 2015 ), activation of GtACR2 by wide-field blue light (455 nm) potently inhibited current-induced spiking in these neurons ( Figure 1C ). However, when we voltage clamped the neurons to record GtACR2-mediated photocurrents, we unexpectedly found an inward current that was superimposed on the photocurrent. This inward current resembled an excitatory postsynaptic current (EPSC; Figure 1D ).
Messier2018-targeting-light-gated-chloride-channels-to-n
not defined in this paper's own words; how the side effect was seen
Messier2018-targeting-light-gated-chloride-channels-to-n
To obtain the cumulative charge transfer curves, the EPSC traces were high-pass filtered at 0.3 Hz to minimize the effect of slow changes in the baselines, except for two neurons that were filtered at 0.5 Hz or 1.3 Hz.
The brain propagates neuronal signals accurately and rapidly. Nevertheless, whether and how a pool of cortical neurons transmits an undistorted message to a target remains unclear. We apply optogenetic white noise signals to small assemblies of cortical pyramidal cells (PYRs) in freely moving mice. The directly activated PYRs exhibit a spike timing precision of several milliseconds. Instead of losing precision, interneurons driven via synaptic activation exhibit higher precision with respect to the white noise signal. Compared with directly activated PYRs, postsynaptic interneuron spike trains allow better signal reconstruction, demonstrating error correction.
Levi2022-error-correction-and-improved-precision-of-s
Thus, the WN signal applied to the PYRs is reconstructed better based on the postsynaptic compared with the presynaptic spike trains. We term this phenomenon “error correction.”
Levi2022-error-correction-and-improved-precision-of-s
not defined in this paper's own words; what the improvement amounts to
Levi2022-error-correction-and-improved-precision-of-s
Finally, we compared error correction and precision improvement between regions.
ecosystem services
mavrommati2014-lake-socioeconomic-coupling
edit simpliciality
landry2024-simpliciality-higher-order-networks
exon skipping
sammeth2008-alternative-splicing-nomenclature
intrinsic sense (e.g. silver as the element with atomic number 47) versus relational-historical sense (rooted in origin)
artefacts-essentialism-and-the-identification
Essentialism defined through relational properties is sometimes discussed in the context of defining biological species and is referred to as ‘relational essentialism’ (Ereshefsky, 2022). In biology, relational essentialism holds that the essential properties of a species can be determined by their relationships, such as their ecological roles or evolutionary connections (Okasha, 2002). It is argu
not defined in this paper's own words; the properties whose possession makes something the kind of thing it is
artefacts-essentialism-and-the-identification
Essentialism in relation to any category, say X, is the idea that all instances of X share a common set of properties that are necessary for their identity as instances of X. These properties constitute the essence of X, and it is the possession of this essence which makes something an instance of X, as opposed to an instance of Y or Z. Hence, the essence of X reveals its identity and answers the
trivial (Essentialism A) versus micro-structural underlying nature (Essentialism B) versus samples belonging essentially (Essentialism C)
crane2021-two-approaches-natural-kinds
The philosophy of language approach is unified by the assumption that some version of a direct reference theory applies to natural kind terms, and by the effort to understand natural kinds in the context of such a semantic theory. There is significant variety among the accounts in this approach; I have focused on the different versions of essentialism that are offered to support the claim that nat
not defined in this paper's own words; healthy, diverse, comparatively uniform microbiota state
berg2020-microbiome-definition-re-visited-o
The division of microorganisms into beneficial, pathogenic, and neutral based on microbial interactions with their hosts is a part of the widely cited microbiome definition by Lederberg and McCray [ 42 ]. According to their interpretation, antagonistic coevolution includes host-parasite interactions, while mutualistic coevolution is present when positive interactions prevail (Fig. 6 ). Such positi
not defined in this paper's own words; the healthy, balanced state of the gut microbial community
brussow2020-gut-dysbiosis-concept
No precise definition has been given for eubiosis beyond a ‘balanced’ microbiota or a microbiota found in healthy subjects.
not defined in this paper's own words in this sentence
shaw2024-tick-borne-pathogen-landscape-ecology
Despite extensive wildlife movement research, the expert input of 30 mammologists, and the use of highly specific land cover data, cost-distance was often similarly or slightly less predictive of our response variables compared to Euclidean distance measurements of isolation, with the exception of B. miyamotoi infection status.
not defined in this paper's own words; distance between model score distributions
jiang2021-graph-neural-networks-molecular-representation
It can be observed that the distributions of the prediction scores for the 1960 molecules given by the eight models vary from one to another although these models have similar prediction accuracy (Table 4 ). If an arbitrary threshold of 0.5 was used to classify inhibitors and non-inhibitors, the number of potential inhibitors given by the eight models are 7, 7, 45, 329, 86, 90, 158 and 284 respect
not defined in this paper's own words; assessment enabled by clear reporting but not performed by the STROBE checklist itself
vonelm2007-strobe
while clarity of reporting is a prerequisite to evaluation, the checklist is not an instrument to evaluate the quality of observational research
not defined in this paper's own words; processes that assess research before and after dissemination
munafo2017-manifesto-reproducible-science
Here we propose a series of measures that we believe will improve research efficiency and robustness of scientific findings by directly targeting specific threats to reproducible science. We argue for the adoption, evaluation and ongoing improvement of these measures to optimize the pace and efficiency of knowledge accumulation. The measures are organized into the following categories 16 : methods
This parameter indicates the water loss due to the evaporation from the soil and transpiration through the stomata of plants; it is known as evapotranspiration (ET).
garcia2020-iot-based-smart-irrigation-systems-an-overview
not defined in this paper's own words; evaporation plus plant transpiration
hassani2021-soil-salinization-climate
An increase in the rate of evapotranspiration and alteration in precipitation patterns, particularly in arid and semi-arid areas, is expected to reduce the soil leaching efficiency and consequently, increase the salt concentrations in top-soil horizons 51 – 53 .
not defined in this paper's own words; basis for constructing testable explanations and predictions
lewis2018-classification-causality-implementation-mechanisms
The National Academy of Science defines “science” as “the use of evidence to construct testable explanations and predictions of natural phenomena, as well as the knowledge generated through this process.” ( 8 ) The field of implementation has spent the past two decades building and organizing knowledge, but we are far from having testable explanations that afford us the ability to generate predict
not defined in this paper's own words; support attached to every annotation through code and reference fields
aleksander2023-the-gene-ontology-knowledgebase-in
All annotations are supported by evidence, comprising two fields in the annotation file ( Fig. 1b ): an evidence code that describes the type of evidence, and a reference that lists a persistent identifier for tracing the source (provenance) of the original data
not defined in this paper's own words; the practice of basing clinical decisions on research evidence, chiefly trials
zanting2024-cultural-diversity-conceptual-analysis
These research methodologies would also satisfy opponents of evidence-based medicine (EBM) (Felder and Meerding, 2017 ; Greenhalgh et al., 2014 ) such as Felder and Meerding ( 2017 ).
relies on (1) the best available evidence; (2) patients’ values, preferences, and knowledge; and (3) healthcare professionals’ experience and expertise
gattrell2024-accord-consensus-reporting
not defined in this paper's own words; care built on research evidence
lee2021-entrapment-covid-pandemic
In particular, it is possible to highlight the barriers encountered during this, specify solutions based on evidence-based practices (EBP)
not defined in this paper's own words; practices whose uptake is the target of implementation efforts
lewis2018-classification-causality-implementation-mechanisms
In recent years, there has been growing recognition of the importance of implementing evidence-based practices as a way to improve the quality of health care and public health. However, the results of implementation efforts have been mixed. About two-thirds of efforts fail to achieve the intended change ( 2 ), and nearly half have no effect on outcomes of interest ( 3 ). Implementation strategies
not defined in this paper's own words; network block exchanging MSA and pair information
jumper2021-highly-accurate-protein-structure-prediction-alphafold
The network comprises two main stages. First, the trunk of the network processes the inputs through repeated layers of a novel neural network block that we term Evoformer to produce an N seq × N res array ( N seq , number of sequences; N res , number of residues) that represents a processed MSA and an N res × N res array that represents residue pairs. The MSA representation is initialized with the
not defined in this paper's own words; the MSA-heavy AF2 block that AF3 replaces
abramson2024-alphafold3
This is achieved by a substantial evolution of the AF2 architecture and training procedure (Fig. 1d ) both to accommodate more general chemical structures and to improve the data efficiency of learning. The system reduces the amount of multiple-sequence alignment (MSA) processing by replacing the AF2 evoformer with the simpler pairformer module (Fig. 2a ). Furthermore it directly predicts the raw
not defined in this paper's own words; homology and evolutionary correlations emphasized by another tradition
jumper2021-highly-accurate-protein-structure-prediction-alphafold
Main The development of computational methods to predict three-dimensional (3D) protein structures from the protein sequence has proceeded along two complementary paths that focus on either the physical interactions or the evolutionary history. The physical interaction programme heavily integrates our understanding of molecular driving forces into either thermodynamic or kinetic simulation of prot
not defined in this paper's own words; phylogenetic branching and elapsed branch length
isaac2007-mammals-edge-conservation-priorities-threat-phylogeny
It has also been argued that maximising Phylogenetic Diversity (PD) should be a key component of conservation priority setting [4] , [12] – [14] . Species represent different amounts of evolutionary history, reflecting the tempo and mode of divergence across the Tree of Life. The extinction of a species in an old, monotypic or species-poor clade would therefore result in a greater loss of biodiver
electric vehicles
chen2019-nasicon-cathode-sodium-ion-batteries
not defined in this paper's own words; the collective term - the class the three mechanism-and-size types are types OF, and the only one of the four names here that the measurement can support
hessvik2017-current-knowledge-on-exosome-bioge
Three main types of EVs have been described based on their mechanism of release and size: exosomes (less than 150 nm in diameter), microvesicles/shedding particles and apoptotic bodies (both considered to be larger than 100 nm).
not defined in this paper's own words; one cell class
Chen2019-differential-cell-type-dependent-brain-state
Using two-photon-guided whole-cell recording, Geis and Borst revealed that the IC shell L1 inhibitory neurons that have large somas receive shorter first-spike latency excitatory inputs than other neurons 49 .
not defined in this paper's own words; the cells the effect is measured in
Natan2015-complementary-control-of-sensory-adaptation
For each putative excitatory neuron, the spontaneous FR and tone-evoked FRs were measured as the mean FR over 50 ms pre- and post-tone onset, respectively.
not defined in this paper's own words; marine governance areas under national jurisdiction
selig2014-global-priorities-marine-biodiversity-conservation
In recent decades, many marine populations have experienced major declines in abundance, but we still know little about where management interventions may help protect the highest levels of marine biodiversity. We used modeled spatial distribution data for nearly 12,500 species to quantify global patterns of species richness and two measures of endemism. By combining these data with spatial inform
not defined in this paper's own words; nationally claimed marine waters used for domestic reconstructions
pauly2016-catch-reconstructions-global-marine-fisheries
Fisheries data assembled by the Food and Agriculture Organization (FAO) suggest that global marine fisheries catches increased to 86 million tonnes in 1996, then slightly declined. Here, using a decade-long multinational ‘catch reconstruction' project covering the Exclusive Economic Zones of the world's maritime countries and the High Seas from 1950 to 2010, and accounting for all fisheries, we id
not defined in this paper's own words; the national marine jurisdictions results are summarised by
halpern2015-cumulative-human-impacts-ocean
Increases tended to be located in tropical, subtropical and coastal regions, with average increases in 77% of all exclusive economic zones (EEZs; Supplementary Data 1–2 ).
not defined in this paper's own words; selection and inhibition responsive to language context
thierry2016-neurolinguistic-relativity-language-cognition
Wu and Thierry ( 2013 ) tested whether language context modulates executive functioning in Welsh‐English bilinguals by measuring interference in an adapted version of the flanker task (Fan, McCandliss, Sommer, Raz, & Posner, 2002 ). Participants were instructed to report the direction of a central arrow (i.e., the target) surrounded by congruent or incongruent flanker arrows. Occasionally, instead
not defined in this paper's own words; top-down regulation of thought content
beaty2015-default-executive-network-creativity
Executive control can mitigate these early sources of interference by suppressing salient conceptual knowledge
not defined in this paper's own words; the non-spatial component that spatial test performance turns out to depend on
Berkowitz2018-which-cognitive-abilities-make-the-differenc
For example, Miyake et al. [ 31 ] showed that performance on SA tests, and particularly on SV tests, highly depended on executive functions, whereas others found that analytical- and heuristic-based strategies are as common and at least as efficient as visualization per se, sometimes even preferable [ 9 , 30 , 32 , 33 ].
related processes involving cognitive control, flexibility, working memory, and inhibition
thomas2018-educational-neuroscience-progress-prospects
While branches of educational neuroscience address cognitive skills relevant to particular academic domains, there is also work that considers cognitive processes that impact all domains. Perhaps the most studied are ‘executive functions’, a set of related processes involving cognitive control and flexibility (Diamond, 2013 ). Executive function skills are strongly predictive of academic achieveme
not defined in this paper's own words; a state of depleted energy
doring2022-videoconference-fatigue
Such conflicts, also called work–home interference , were found to be causally related to later exhaustion and work pressure in a study by Demerouti et al. [ 127 ].
not defined in this paper's own words; mental, physical and emotional draining that follows sustained effort
hull2017-social-camouflaging-autism
By far the most consistent consequence of camouflaging described by respondents was exhaustion.
a form of RNA splicing which leaves out faulty exons
kaczmarek2017-rna-therapeutics-delivery
not defined in this paper's own words; a splicing pattern in which an exon is left out of one transcript
sammeth2008-alternative-splicing-nomenclature
Traditionally, terms for only five kinds of AS events have been coined: exon skipping (ES), mutually exclusive exons (ME), intron retention (IR), alternative donor (AD) and acceptor (AA) sites [10] .
not defined in this paper's own words; observations whose status can shift to metadata under another investigator's perspective
gentleman2004-bioconductor-open-software-development
Metadata are data about data and their definition depends on the perspective of the investigator. Metadata for one investigator may well be experimental data for another. There are two major challenges that we will consider. First is the evolutionary nature of the metadata. As new experiments are done and as our understanding of the biological processes involved increases the metadata changes and
not defined in this paper's own words; published observations evaluated by curators
bateman2020-uniprot-the-universal-protein-know
Expert curation The evaluation of experimental data published in the scientific literature, and summarizing key points of biological relevance in the appropriate reviewed UniProtKB/Swiss-Prot record, is fundamental to the operation of the UniProt database. The functional information extracted from the literature is added both in the form of human readable summaries and via structured vocabularies,
not defined in this paper's own words; biases through which expectations shape research observations or outcomes
munafo2017-manifesto-reproducible-science
A hallmark of scientific creativity is the ability to see novel and unexpected patterns in data. John Snow's identification of links between cholera and water supply 17 , Paul Broca's work on language lateralization 18 and Jocelyn Bell Burnell's discovery of pulsars 19 are examples of breakthroughs achieved by interpreting observations in a new way. However, a major challenge for scientists is to
not defined in this paper's own words; outcome differences associated with investigators prior beliefs or expectations
wahbeh2022-what-if-consciousness-is-not-an-emergent-pro
In a conceptually similar design, rather than testing whether one person could select a correct image sent by another isolated person, the person’s unconscious physiological state was intentionally influenced by a second person who was asked to focus their attention on them. These studies have typically used measures such as electrodermal activity ( Braud and Schlitz, 1983 ; Radin et al., 2008 ),
We achieved a good balance between experts in the field (43%, defined both as having attended ASSC—a conference organized by a professional society—or having published >5 papers on the topic), versus non-experts.
Michel2018-an-informal-internet-survey-on-the-current-s
the art-making (artistic-quality) audience sense versus the art-pricing (monetary-value) audience sense
social-reputation-influences-on-liking
Participants were first welcomed to the lab and asked to sign the informed consent. We then determined the dominant eye by asking participants to focus on an object while alternately covering the other eye. Afterwards, the movement of the dominant eye was calibrated with EyeLink 1000 (SR Research Ltd., Mississauga, Ontario, Canada). Calibration was repeated for each of the two blocks. Male partici
not defined in this paper's own words; the 71 implementation and clinical experts
powell2015-refined-compilation-implementation-strategies-eric
This study aimed to refine and achieve consensus on a compilation of implementation strategy terms and definitions by systematically gathering input from a wide range of stakeholders. A large, accomplished panel of implementation and clinical experts was successfully engaged in a rigorous consensus development process. Participants identified substantial concerns with 31% of the terms and/or defin
not defined in this paper's own words; two of them, deleting 11 items then 7 - the largest single source of item removal
ahorsu2020-the-fear-of-covid-19-scale-develop
First, an extensive literature review was conducted to assess all general scales on fear. Thirty measures on fear were identified that assess fear on different populations and diseases (available on request from the corresponding authors). Relevant and possible items were pooled by two researchers (i.e., the third and last authors). After removing those items with similar content or expressions, 2
not defined in this paper's own words; experience and knowledge that reshape aesthetic judgment
specker2022-expertise-culture-visual-art-appreciation
The meaning drawn from the content of an artwork also depends on the observer’s experience, expertise, and knowledge of the artworks. Indeed, previous evidence has shown increased aesthetic ratings for abstract artworks among those with expertise and knowledge of art 24 – 26 . Therefore, although a general preference for representational artworks compared to abstract artworks seems to exist, evide
operationalised two different ways in the same paper, with results checked against both: more than five articles published, or attendance at the ASSC
Michel2018-an-informal-internet-survey-on-the-current-s
our results did not significantly vary depending on how we defined expertise (either as publishing more than five articles on consciousness, or as attending to the ASSC at least once).
Adding to these strategies, a growing field known as explainable artificial intelligence (XAI) seeks to demystify AI decision-making processes through improving inference reliability and enhancing transparency and interpretability [ 98 ].
najjar2023-redefining-radiology-a-review-of-artificial-intelligence
methods adding information about how a machine-learning output was reached
fritts2022-doctors-ai-human-responsibility-artificial-risks
To tackle the problems of understanding what happens inside the black box of an ML system, a new subfield of AI, called XAI (eXplainable Artificial Intelligence, Gunning et al., 2019 ), has recently emerged. The basic idea is to enhance an existing ML system so that its output is accompanied by an “explanation” of the results. Such explanation is for the humans using the ML system, and it is meant
companion exemplars, rationales, and evidence bases for checklist items
moher2009-prisma
In addition to the PRISMA Statement, a supporting Explanation and Elaboration document has been produced [18] following the style used for other reporting guidelines [19] – [21] . The process of completing this document included developing a large database of exemplars to highlight how best to report each checklist item, and identifying a comprehensive evidence base to support the inclusion of eac
item rationale, methodological background, and published reporting exemplars
schulz2010-consort
Along with the CONSORT statement, we have updated the explanation and elaboration article, [13] which explains the inclusion of each checklist item, provides methodological background, and gives published examples of transparent reporting
not defined in this paper's own words; analysis intended to discover relationships
benchimol2015-record-routinely-collected-health-data
No items specific to the RECORD guidelines are needed in addition to the STROBE items. The STROBE guidelines advise that “specific objectives, including any pre-specified hypotheses,” be stated in the Introduction section. Stating the specific research objectives is essential for replication and translation of any observational research. For studies using routinely collected data, authors should f
not defined in this paper's own words; the trial-and-error interactive mode of data analysis
afgan2018-galaxy-platform-accessible-reproducible-collaborative
There are two common modes of data analysis: exploratory and pipeline execution. Galaxy enables simultaneous access to both of these. Users are able to interactively analyze their data by making use of individual tools in a trial-and-error manner. They are then able to automatically generate reusable and generalizable workflows from an ad hoc analysis. An interactive workflow editor is also availa
not defined in this paper's own words; a statistical method that finds which items group together as underlying factors
saunders2022-body-dissatisfaction-weight-stigma
To adequately refine the existing measures of internalized weight stigma and body dissatisfaction, we first split the sample into two random halves to allow for both an exploratory factor analysis (EFA) and confirmatory factor analysis (CFA) with the sample.
not defined in this paper's own words; what the single-factor claim rests on, and what the authors say needs confirming
ahorsu2020-the-fear-of-covid-19-scale-develop
Analyses on psychometric properties included CTT analysis and Rasch model analysis. CTT analysis included internal consistency, test-retest reliability, corrected item-total correlation, average variance extracted (AVE), composite reliability, standard error of measurement, concurrent validity, and exploratory factor analysis (EFA). Rasch model analysis included infit and outfit mean square (MnSq)
`a history of residence in an endemic area, no matter how remote, travel ..., or contact with fomites such as soil or vegetation`
donnelly2019-revision-and-update-of-the-consens
Exposure to 1 of these fungi is defined as a history of residence in an endemic area, no matter how remote, travel to an endemic area, or contact with fomites such as soil or vegetation that is derived from an endemic area.
not defined in this paper's own words; visibility gained through Astropy listing and promotion
astropycollaboration2018-building-open-science-project
Affiliated packages are listed on the main Astropy website and advertised to the community through Astropy mailing lists; a list of current affiliated packages is included in Table 1. Becoming an affiliated package is a good way for new and existing packages to gain exposure while promoting Astropy’s high standard for code and documentation quality. This process of listing and promoting affiliated
not defined in this paper's own words; customization and export capability
ewels2016-multiqc-analysis-results
As the field of next-generation sequencing matures, there are increasing numbers of bioinformatics tools producing ever more verbose descriptions of data. Integrating these statistics across tools with large sample sets is difficult and time-consuming. MultiQC can automate the parsing of this metadata, providing powerful visualizations with a simple interface. Extension and data export allow Multi
specialist sense: complementary terms or use guidance for a biodiversity sub-domain
wieczorek2012-darwin-core-evolving-community-biodiversity-data-standard
Because Darwin Core aims to cover the common ground in biodiversity, it inevitably lacks terms that are of interest to more specialized groups. A Darwin Core Extension consists of additional terms describing a complementary, related domain, or guidance on the use of Darwin Core within a specific sub-domain of biodiversity. Over the last decade, Darwin Core has evolved by means of extensions, some
the range of cases that the concept can be applied in
tang2023-what-is-esports
not defined in this paper's own words; photocurrent per incident photon, measured across wavelengths
sun2018-low-cost-polymer-donor-solar-cells
The external quantum efficiency (EQE) spectra of the optimized devices with different post-processing treatments are shown in Fig. 2b .
not defined in this paper's own words; the fraction of incident photons converted to collected charge carriers
chen2017-thin-single-crystal-perovskite-solar-cells
To determine the optimal thickness of perovskite single crystals, we assumed a constant FF of 80%, 90% external quantum efficiency (EQE) over the whole absorption spectrum, which are all reasonable and are justified in the “Method” section.
not defined in this paper's own words; generalizability and context-sensitive validity emphasized by RE-AIM
glasgow2019-re-aim-planning-evaluation-framework
The RE-AIM framework ( 1 ) was developed to address the issue that the translation of scientific advances into practice, and especially into public health impact and policy, have been slow and inequitable ( 2 – 6 ). RE-AIM and other models ( 7 ) have helped balance the traditional focus on internal over external validity. Unique features of RE-AIM include an explicit focus on issues, dimensions, a
not defined in this paper's own words; the parenthetical name the checklist gives for generalisability
vonelm2007-strobe
Discuss the generalisability (external validity) of the study results
not defined in this paper's own words; Red List-derived urgency of species loss
isaac2007-mammals-edge-conservation-priorities-threat-phylogeny
In order to represent a useful tool in priority setting, ED scores must be applicable in real phylogenies of large taxonomic groups. To do this, we modified the basic procedure described above to control for missing species, incomplete phylogenetic resolution and uncertainty in node ages (see Materials and Methods ). The approach is implemented using a dated phylogeny of the Class Mammalia that is
not defined in this paper's own words; risk governed here by demographic, evolutionary, and environmental-impact determinants
chevin2010-adaptation-plasticity-extinction-changing-environment
There are three mechanisms by which a population can persist when its local environment changes: dispersal to track its preferred environment in space, genetic evolution to the new local conditions, or phenotypic plasticity [17] , [18] . Using the model in Box 2 and Text S1 , we give an overview of the determinants of extinction risk for an isolated population with a restricted geographic range un
not defined in this paper's own words; the probability that a population fails to persist
oostra2018-phenotypic-plasticity-climate-change
Theoretical models predict that reduced environmental predictability places species with strong plasticity under increased extinction risk
not defined in this paper's own words; the organic matrix binding the granule
lawson2017-anammox-metabolic-network
Anammox granules consist of a mixture of cell aggregates and abiotic particles embedded within a matrix of organic extracellular polymeric substances (EPS) 9 10 11 .
not defined in this paper's own words; the secreted polymer matrix that holds a biofilm together
zhao2023-bacterial-biofilms-definition
Bacterial biofilms are usually defined as fixed microbial communities encased in extracellular polymeric substances (EPS).
the maximum daily precipitation each year
pendergrass2017-precipitation-variability-warmer-climate
not defined in this paper's own words; rare heavy precipitation, indexed here by the 30-year return level
tabari2020-climate-flood-extreme-precipitation
A 30-year return level of precipitation and river flow (average occurrence of once every 30 years) at each grid cell is used as the indicator of extreme precipitation and flooding.
extrinsic motivation is the propensity to perform a behavior or action in order to obtain external rewards or desirable outcomes
stevens2020-affective-determinants-physical-activity
task engagement to obtain rewards such as grades or social recognition
ng2018-growth-mindset-intrinsic-motivation
Intrinsic motivation is inherent, as it drives the direction of an individual’s behavior and self-determination [ 16 ]. Self-determination is important in the development of beings to become more effective and refined in their reflection of ongoing experiences [ 17 ]. When students experience the inherent satisfaction of the activity itself, they will show intrinsically motivated behavior. If stud
not defined in this paper's own words; class-imbalance-sensitive evaluation metric
cirillo2021-bias-big-data-ai-open-science
Alternative metrics should therefore be used that are attuned to class imbalance, such as the F1 score.
We use standard evaluation metrics, precision-recall curves and the F1 score [ 7 ] (i.e., the harmonic mean of precision and recall), to perform extensive evaluations using data collected from three commercial sites acquired during day and night.
sa2016-deepfruits-a-fruit-detection-system-using-deep
not defined in this paper's own words; harmonic mean of precision and sensitivity for diagnosis prediction
rajkomar2018-scalable-accurate-deep-learning-electronic-health-records
We assessed model discrimination by calculating AUROC and model calibration using comparisons of predicted and empirical probability curves. 85 We did not use the Hosmer–Lemeshow test as it may be misleadingly significant with large sample sizes. 86 To quantify the potential clinical impact of an alert with 80% sensitivity, we report the work-up to detection ratio, also known as the number needed
not defined in this paper's own words in this sentence
gjini2023-invasion-resistance-multispecies-communities
The extreme of μ → 0 can be obtained for increased facilitation between resident species (higher values of k ), which typically would lead to higher invasion resistance of the system.
a process of interactive problem solving and support in a context of a recognised need for improvement and a supportive interpersonal relationship
powell2015-refined-compilation-implementation-strategies-eric
Facilitation A process of interactive problem solving and support that occurs in a context of a recognized need for improvement and a supportive interpersonal relationship
not defined in this paper's own words; an interactive support strategy, proposed as external facilitation and retained as facilitation
powell2015-refined-compilation-implementation-strategies-eric
Each of the five new strategies that the panel proposed was maintained in some form. Panelists had the opportunity to reject the proposed additions, but on average, across the five strategies, 84% of panelists voted to retain the new strategy (range 100 to 71%). Each of the new strategies had an initial proposed definition in Round 1. Panelists had the opportunity to suggest alternative definition
FACS [10] is an objective method for labeling facial movements in terms of component actions.
yan2014-casme-ii-an-improved-spontaneous-micro-expression
Terminology Before reviewing researches related to FER, special terminology playing an important role in FER research is listed below: The facial action coding system (FACS) is a system based on facial muscle changes and can characterize facial actions to express individual human emotions as defined by Ekman and Friesen [ 14 ] in 1978.
ko2018-a-brief-review-of-facial-emotion-recognition
not defined in this paper's own words; latent-structure method used to reduce and organize emotion items
menninghaus2017-measuring-aesthetic-emotions
We analyzed the dimensional structure of the items in several steps. First, we conducted a confirmatory factor analysis (CFA) to test whether the 75 items followed the theoretically expected structure of 24 dimensions, using the software Mplus 7.4 [ 181 ]. The estimation procedure did not converge properly, due to a high multicollinearity of the latent factors. For this reason, we explored the dim
not defined in this paper's own words; regression model extracting latent factors from observed variables
boateng2018-best-practices-developing-validating-scales
Factor extraction is the phase in which the optimal number of factors, sometimes called domains, that fit a set of items are determined. This is done using factor analysis. Factor analysis is a regression model in which observed standardized variables are regressed on unobserved (i.e., latent) factors. Because the variables and factors are standardized, the bivariate regression coefficients are al
Findable, Accessible, Interoperable, and Reusable for both machines and people
wilkinson2016-fair-guiding-principles-data-stewardship
With this goal in-mind, a workshop was held in Leiden, Netherlands, in 2014, named ‘Jointly Designing a Data Fairport’. This workshop brought together a wide group of academic and private stakeholders all of whom had an interest in overcoming data discovery and reuse obstacles. From the deliberations at the workshop the notion emerged that, through the definition of, and widespread support for, a
not defined in this paper's own words; short name for the data principles
bateman2020-uniprot-the-universal-protein-know
INTRODUCTION The UniProt databases exist to support biological and biomedical research by providing a complete compendium of all known protein sequence data linked to a summary of the experimentally verified, or computationally predicted, functional information about that protein. The UniProt Knowledgebase (UniProtKB) combines reviewed UniProtKB/Swiss-Prot entries, to which data have been added by
four concise, domain-independent considerations for supporting manual and automated deposition, exploration, sharing, and reuse
wilkinson2016-fair-guiding-principles-data-stewardship
Representatives of the interested stakeholder-groups, discussed above, coalesced around four core desiderata—the FAIR Guiding Principles—and limited elaboration of these, which have been refined ( Box 2 ) from the meeting’s original draft, available at ( https://www.force11.org/node/6062 ). A separate document that dynamically addresses community discussion relating to clarifications and explanati
not defined in this paper's own words; refined four-principle framework for machines and people
wilkinson2016-fair-guiding-principles-data-stewardship
With this goal in-mind, a workshop was held in Leiden, Netherlands, in 2014, named ‘Jointly Designing a Data Fairport’. This workshop brought together a wide group of academic and private stakeholders all of whom had an interest in overcoming data discovery and reuse obstacles. From the deliberations at the workshop the notion emerged that, through the definition of, and widespread support for, a
impartial and just treatment under locally varying legal and ethical principles
roselli2022-algorithmic-political-bias-ai
Algorithmic political bias occurs when an AI system’s output tends to violate a normative (moral or social) standard resulting in one kind of individual, group, or content being unfairly privileged or discriminated against based on their political orientation. The meaning of ‘unfair’ and ‘fair’ in the context of algorithms is commonly ‘judged against a set of legal or ethical principles, which ten
implementing and enforcing the rules in way that can be seen as fair to all
stupak2021-sustainability-governance-legitimacy-trust
not defined in this paper's own words
reagor2023-pseudotime-lagged-causality
Because the neighbor genes can present stronger alternatives to the primary hypothesis that A directly regulates B , including these matrices for A and B versus their highly correlated transcription factors reduced false-positive predictions.
not defined in this paper's own words; incorrect high-risk alerts
rajkomar2018-scalable-accurate-deep-learning-electronic-health-records
Another challenge is that the number of potential predictor variables in the electronic health record (EHR) may easily number in the thousands, particularly if free-text notes from doctors, nurses, and other providers are included. Traditional modeling approaches have dealt with this complexity simply by choosing a very limited number of commonly collected variables to consider. 7 This is problema
not defined in this paper's own words; how familiar an odour is, shaping whether the match is semantic or perceptual
olfactory-colour-crossmodal-correspondences
Stevenson et al. ( 2012 ) had 18 participants evaluate 20 odours varying in terms of their semantic (i.e. familiarity and nameability) and perceptual (i.e. intensity, irritancy, and hedonics) attributes. The odorants included: almond essence, plastic, garlic, cut grass, strawberry, coal-tar soap, durian, caramel, vinegar, mushroom, pine, Brut aftershave, lemon, organic fertiliser, cinnamon, wet ea
not defined in this paper's own words; the field version of the laboratory's repetition variable - measured for real candidates in a real election, and found to explain voting probability and to track how often each candidate was mentioned in the news
Bernal2022-top-down-modulation-impairs-priming-suscepti
The familiarity and trust to each candidate explained the voting-probability for most of them, as well as correlated with their frequency of mentions in the news, their positive associations, and election results
higher taxonomic rank
mora2011-how-many-species-earth-ocean
The diversity of life is one of the most striking aspects of our planet; hence knowing how many species inhabit Earth is among the most fundamental questions in science. Yet the answer to this question remains enigmatic, as efforts to sample the world's biodiversity to date have been limited and thus have precluded direct quantification of global species richness, and because indirect estimates re
the Pfam sense: one of four sibling categories, so that a Pfam 'family' is a species of the very thing the word names
asgari2015-protvec
In Pfam, a family can be classified as a “family”, “domain”, “repeat”, or “motif”.
the broad sense: a set of evolutionarily related proteins, which is what the classification task means by it
asgari2015-protvec
A protein family is a set of proteins that are evolutionarily related, typically involving similar structures or functions.
not defined in this paper's own words; a variant of the term used mainly in aged care and paediatrics
byrne2020-person-centred-care-nursing-definition
Other variables such as Family-centred care are used more in the context of aged care and paediatrics
not defined in this paper's own words; care that treats the family, not the child alone, as the unit around which children's healthcare is planned
carter2024-child-centred-care-concept
Other facets of centredness in healthcare include person-centred (and patient-centred) care, family-centred care (FCC) and various (and perhaps confounding) combinations of these.
Food and Agriculture Organization
halpern2015-cumulative-human-impacts-ocean
not defined in this paper's own words; Food and Agriculture Organization receiving national catch submissions
pauly2016-catch-reconstructions-global-marine-fisheries
Fisheries data assembled by the Food and Agriculture Organization (FAO) suggest that global marine fisheries catches increased to 86 million tonnes in 1996, then slightly declined. Here, using a decade-long multinational ‘catch reconstruction' project covering the Exclusive Economic Zones of the world's maritime countries and the High Seas from 1950 to 2010, and accounting for all fisheries, we id
not defined in this paper's own words; files produced after an Illumina filter that discarded some useful reads
elshire2011-genotyping-by-sequencing-high-diversity-species
Analyses of the 86 bp sequencing reads were based upon the unfiltered qseq files, since the filtering process that produces fastq files sometimes discarded good reads that aligned perfectly to the reference genome for at least 64 bases. Starting with the qseq files from a flow cell, we first filtered for reads that (1) perfectly matched one of the barcodes and the expected four-base remnant of the
not defined in this paper's own words; paired-read storage files
bolger2014-trimmomatic-flexible-trimmer
The preprocessing approach must also not interfere with the downstream analysis of the data. For example, NGS data often come in the form of paired-end reads, and typically, the forward and reverse reads are stored in two separate FASTQ files, which contain reads from each DNA fragment in the same order. Many downstream tools use this positional relationship between pairs, so it must be maintained
family-centred care
carter2024-child-centred-care-concept
flux control coefficients
lu2019-yeast8-consensus-metabolic-model
conditioned reflexes maintained by learned thinking that constantly reminds individuals of their flaws
liang2022-social-isolation-cancer-concept
not defined in this paper's own words
lopezmunoz2019-alexithymia-concept-history
Thus, for example, the US surgeon William Beaumont (1785–1853) established that fear and anger reduced the amount of gastric mucus secreted ( 6 ).
not defined in this paper's own words; NETSCC's class: research before a main study, estimating design parameters only
arain2010-what-is-a-pilot-or-feasibility-stu
Feasibility Studies are pieces of research done before a main study. They are used to estimate important parameters that are needed to design the main study. For instance: • standard deviation of the outcome measure, which is needed in some cases to estimate sample size, • willingness of participants to be randomised, • willingness of clinicians to recruit participants, • number of eligible patien
not defined in this paper's own words; the overarching class: any study asking whether a future RCT can be done
eldridge2016-defining-feasibility-and-pilot-stu
We initially adopted mutually exclusive definitions of pilot and feasibility studies. However, some Delphi survey respondents and the majority of open meeting attendees disagreed with the idea of mutually exclusive definitions. Their viewpoint was supported by definitions outside the health research context, the use of the terms ‘pilot’ and ‘feasibility’ in the literature, and participants at the
`all studies aiming to assess whether a future RCT is do-able` - asks whether something can be done, should we proceed with it, and if so how
eldridge2016-defining-feasibility-and-pilot-stu
Within our framework we define all studies aiming to assess whether a future RCT is do-able as ‘feasibility studies’.
`pieces of research done before a main study ... used to estimate important parameters ... Crucially, feasibility studies do not evaluate the outcome of interest`
arain2010-what-is-a-pilot-or-feasibility-stu
Feasibility Studies are pieces of research done before a main study. They are used to estimate important parameters that are needed to design the main study. For instance: • standard deviation of the outcome measure, which is needed in some cases to estimate sample size, • willingness of participants to be randomised, • willingness of clinicians to recruit participants, • number of eligible patien
not defined in this paper's own words; a pilot investigation used to guide planning of a larger study
thabane2010-a-tutorial-on-pilot-studies-the-what
A closer look at these definitions reveals that they are similar to the ones above in that a pilot study is synonymous with a feasibility study intended to guide the planning of a large-scale investigation.
A feature can be nominal (enumeration), binary (i.e., 0 or 1), ordinal (e.g., A+ or B−), or numeric (integer, real number, etc.).
liakos2018-machine-learning-in-agriculture-a
THREE NAMES FOR ONE THING, SAID IN ONE SENTENCE: `a set of attributes, also known as features or variables`. The corpus holds `variables` as a content_tags layer and `features` as a concept on other records, and this is the paper that says they are the same object seen from statistics, from machine learning and from experimental design
liakos2018-machine-learning-in-agriculture-a
Usually, an individual example is described by a set of attributes, also known as features or variables.
not defined in this paper's own words; performance information used as a training ingredient
lewis2018-classification-causality-implementation-mechanisms
In our case example, training is a strategy that is underspecified. We adapted procedures from Michie et al. ( 26 ) to guide strategy specification recommending that each strategy be assessed for whether it: (1) aims to promote the adoption, implementation, sustainment, or scale-up of an evidence-based practice; (2) is a proposed “active ingredient” of adoption, implementation, sustainment, or sca
not defined in this paper's own words; review feedback given to code contributors
astropycollaboration2018-building-open-science-project
The Astropy Project is also spreading awareness of best practices in community-driven software development. This is important because most practicing astronomers were not explicitly taught computer science and software development, despite the fact that a substantial fraction of many astronomers’ workload today is related to software use and development. The astropy package leads by example, showi
not defined in this paper's own words; the other name for the distal drive
Kohl2022-neural-mechanisms-underlying-human-auditory
We also applied the modeling framework to develop and test predictions on neural mechanisms underlying AEF differences in the left and right hemispheres, as well as in hemispheres contralateral and ipsilateral to the presentation of the auditory stimulus. We found that increasing the strength of the excitatory synaptic cortical feedback inputs to supragranular layers simulates the commonly observe
Falls Efficacy Scale
lee2023-fear-of-falling-older-adults
at equilibrium, R (∞)
kabir2020-evolutionary-game-economic-shutdown
face edit simpliciality
landry2024-simpliciality-higher-order-networks
not defined in this paper's own words; feature that manifests in many diseases
kohler2020-the-human-phenotype-ontology-in-2021
The community uses the word phenotype with multiple meanings. The HPO defines a disease as an entity that has all four of the following attributes: an etiology (whether identified or as yet unknown) a time course a set of phenotypic features if treatments exist, there is a characteristic response to them A phenotype phenotypic feature is a part of a disease. The phenotype of an individual with a d
not defined in this paper's own words; typical clinical symptom
zhou2020-a-pneumonia-outbreak-associated-wi
Coronaviruses have caused two large-scale pandemics in the past two decades, SARS and Middle East respiratory syndrome (MERS) 8 , 9 . It has generally been thought that SARSr-CoV—which is mainly found in bats—could cause a future disease outbreak 10 , 11 . Here we report on a series of cases caused by an unidentified pneumonia disease outbreak in Wuhan, Hubei province, central China. This disease
not defined in this paper's own words; transistors whose channel conduction is set by a gate voltage
chen2015-sandwiched-black-phosphorus-quantum-oscillations
Recently, field-effect transistors (FETs) 12 , 13 , 14 , 15 , 24 , 25 , 26 , electrically tunable PN junctions 22 , radio-frequency transistors 27 and heterojunctions 28 , 29 based on few-layer BP have also been demonstrated.
not defined in this paper's own words; the devices built on the h-BN substrates to measure carrier mobility
kim2015-large-area-multilayer-hexagonal-boron-nitride
Field-effect transistors (FETs) with CVD-grown monolayer graphene, monolayer MoS 2 and monolayer WSe 2 are fabricated on the grown multilayer h-BN substrates, achieving carrier mobilities as high as ∼24,000, 40 and∼9 cm 2 V −1 s −1 at room temperature, respectively.
not defined in this paper's own words; open-source bioimage-analysis package
bankhead2017-qupath-open-source-digital-pathology
In recent years, a vibrant ecosystem of open source bioimage analysis software has developed. Led by ImageJ 3 , researchers in multiple disciplines can now choose from a selection of powerful tools, such as Fiji 4 , Icy 5 , and CellProfiler 6 , to perform their image analyses. These open source packages encourage users to engage in further development and sharing of customized analysis solutions i
not defined in this paper's own words; package based on the ImageJ codebase
mcquin2018-cellprofiler-next-generation-image
The open-source biological image analysis software ecosystem is thriving [ 1 ]. ImageJ [ 2 ] was the first and is still the most widely used package for bioimage analysis; several other packages are based on its codebase (most notably, Fiji). ImageJ excels at the analysis of individual images, with a user interface analogous to Adobe Photoshop. Its major strength is its community of users and deve
When SPADs are grouped in imagers one must consider electrical and optical crosstalk and the fill factor, which denotes the ratio between the photosensitive area and the total pixel area.
bruschini2019-single-photon-avalanche-diode-imagers-in-biophotonics
not defined in this paper's own words; the ratio of maximum power to the product of open-circuit voltage and short-circuit current
sun2018-low-cost-polymer-donor-solar-cells
showed a PCE of 12.13% with a V oc of 0.960 V, a J sc of 19.65 mA cm −2 , and an fill factor (FF) of 64.29%, as shown in Table 1 and in Supplementary Fig. 3 .
not defined in this paper's own words; FAIR discovery dimension
wilkinson2016-fair-guiding-principles-data-stewardship
This article describes four foundational principles—Findability, Accessibility, Interoperability, and Reusability—that serve to guide data producers and publishers as they navigate around these obstacles, thereby helping to maximize the added-value gained by contemporary, formal scholarly digital publishing. Importantly, it is our intent that the principles apply not only to ‘data’ in the conventi
not defined in this paper's own words; property maintained for redundant proteomes through stable identifiers
bateman2020-uniprot-the-universal-protein-know
we continue to remove almost identical proteomes of the same species from UniProtKB ( https://www.uniprot.org/help/proteome_redundancy ), leaving only a relevant representative proteome in that section of the database. The redundant proteome sequences are available through UniParc to researchers and stable proteome identifiers (of the form UPXXXXXXXXX, where Xs are integers) are maintained for eac
the FAIR objective that digital objects and their metadata can be discovered by people and machines
wilkinson2016-fair-guiding-principles-data-stewardship
With this goal in-mind, a workshop was held in Leiden, Netherlands, in 2014, named ‘Jointly Designing a Data Fairport’. This workshop brought together a wide group of academic and private stakeholders all of whom had an interest in overcoming data discovery and reuse obstacles. From the deliberations at the workshop the notion emerged that, through the definition of, and widespread support for, a
a primary method involving parameter updates, where the pretrained LLM is further trained on a task-specific dataset
abdurahman2024-llms-psychological-research
not defined in this paper's own words; second stacked-network training stage
voulodimos2018-deep-learning-for-computer-vision
It is possible to stack denoising autoencoders in order to form a deep network by feeding the latent representation (output code) of the denoising autoencoder of the layer below as input to the current layer. The unsupervised pretraining of such an architecture is done one layer at a time. Each layer is trained as a denoising autoencoder by minimizing the error in reconstructing its input (which i
not defined in this paper's own words; computed structural bit representations
sorokina2021-coconut-open-natural-products
Each unique NP is then assigned a unique identifier, composed of the “CNP” prefix and 7 digits. An automatic curation for NP metadata is performed, comprising the retrieval of its official name, synonyms, cross-references to other major chemical databases. Then, a range of molecular properties, descriptors and fingerprints (full list in Table 2 ) are computed using the in-build CDK [ 13 ] librarie
not defined in this paper's own words; structural feature encodings
jiang2021-graph-neural-networks-molecular-representation
Molecular property modelling, which assists in hunting for chemicals with desired pharmacological and ADME/T (absorption, distribution, metabolism, excretion, and toxicity) properties, is one of the most classical cheminformatics tasks [ 1 , 2 ]. A variety of machine learning (ML) approaches, such as Naive Bayes (NB) [ 3 – 5 ], k-Nearest Neighbors (k-NN) [ 6 ], logistic regression (LR) [ 7 , 8 ],
once reported as caused by T2DM, now found to be associated with its development
mahyoub2023-fatty-pancreas-concept
Although old studies have reported T2DM as the cause of FIP ( 5 , 33 ), recent studies have found that FIP is associated with T2DM development ( 34 , 35 ).
the presence of one or more of the following features: (1) inter-lobular fat, which is the presence of cells containing fat between pancreatic lobules; (2) lipid droplets within pancreatic acinar cells or islets; (3) pancreatic acinar-to-adipocyte trans-differentiation; and (4) fat replacement of dead pancreatic acinar cells
mahyoub2023-fatty-pancreas-concept
the ensemble mean of nine index-by-dataset season lengths per location
jolly2015-global-wildfire-danger-climate
Because climate studies using multi-model ensembles are generally superior to single model approaches 43 , all nine fire weather season lengths for each location were averaged into an ensemble mean fire weather season length, hereafter referred to as ‘Fire Weather Season Length' (See Supplementary Methods ).
the number of days each year when fire danger is above half its value range
jolly2015-global-wildfire-danger-climate
not defined in this paper's own words; the excitability read-out
Lohse2020-neural-circuits-underlying-auditory-contrast
Transiently silencing auditory cortex by optogenetic activation of inhibitory neurons (Supplementary Fig. 6 ) reduced the mean firing rate of MGBv units ( n MGBv = 102, five mice) during both high-contrast (−23.6% median change, p = 4.2 × 10 −18 , Wilcoxon signed-rank test) and low-contrast (−31.3% median change, p = 3.4 × 10 −18 ) stimulation, as well as the standard deviation of the firing rate
not defined in this paper's own words; the rival explanation for the timescale difference, measured and apportioned rather than dismissed
Neophytou2022-differences-in-temporal-processing-speeds-be
Unfortunately, bootstrapping or resampling procedures cannot practically correct for these issues. For example, if there are only a handful of spikes, bootstrap samples may consistently provide very small time constants such that the variance of the estimator is close to zero. However, in this low firing rate regime, the uncertainty of the estimator should be large if we properly accounted for the
a data collection method with a small group of people to discuss a given topic, usually guided by a moderator using a questioning-route
moser2017-qualitative-research-sampling-guidance
not defined in this paper's own words; moderated group conversations used to gather shared views on a topic
savadogo2015-community-definition-poverty
Focus Group Discussions (FGD) were conducted in 41 villages and 24 sub-sectors of Nouna’s town, totaling 65 FGDs.
not defined in this paper's own words; selection of food under a purchasing intervention
bucher2020-nudges-real-life-food-purchasing
In the present systematic review, our first aim is to review the evidence for the effectiveness of nudges as classified according to the TIPPME typology in promoting healthy purchases, food choice, or affecting energy intake or content of purchases within real-life food purchasing environments among adult populations. Second, we aimed to investigate the potentially moderating role of SEP.
represents behaviors and other factors occurring before food actually reaches the mouth
stok2018-dietary-behavior-taxonomy
According to Swinburn, et al. [ 40 ], food environment equals to the collective physical, economic, policy, and sociocultural surroundings, opportunities, and conditions that influence people’s food choices and nutritional status.
chen2020-conceptual-models-of-food-choice-influential-factors
the consumer interface with the food system that encompasses the availability, affordability, convenience, promotion and quality, and sustainability of foods and beverages in wild, cultivated, and built spaces
downs2020-food-environment-typology
not defined in this paper's own words; adequate food availability for the global population
ray2013-yield-trends-global-crop-production
Numerous studies have shown that feeding a more populated and more prosperous world will roughly require a doubling of agricultural production by 2050 [1] – [7] , translating to a ∼2.4% rate of crop production growth per year. We find that the top four global crops – maize, rice, wheat, and soybean – are currently witnessing average yield improvements only between 0.9 to 1.6 percent per year, far
not defined in this paper's own words; policy concern linked to declining seafood availability
pauly2016-catch-reconstructions-global-marine-fisheries
The very high catches that were achieved globally in the 1990s were probably not sustainable. However, they do suggest that stock rebuilding, as successfully achieved in many Australian and US fisheries, and beginning to be applied in some European fisheries, is a policy that needs wider implementation, and which would generate even higher sustained benefits than previously estimated from reported
not defined in this paper's own words; a structure or plan of descriptive categories and relations presumed to account for a phenomenon
nilsen2015-implementation-theories-models-frameworks
A framework usually denotes a structure, overview, outline, system or plan consisting of various descriptive categories, e.g. concepts, constructs or variables, and the relations between them that are presumed to account for a phenomenon [ 38 ]. Frameworks do not provide explanations; they only describe empirical phenomena by fitting them into a set of categories [ 29 ].
not defined in this paper's own words; the kind of thing the Transtheoretical Model is said to be
leask2012-communicating-with-parents-about-v
It should also be borne in mind that motivational interviewing builds upon the Transtheoretical Model [ 68 ]. This is a framework for understanding the process of behaviour change where individuals may pass through five stages: precontemplation , where they are not considering change; contemplation , where they seriously consider change; preparation , where they plan and commit to change; action ,
a two staged approach; data extraction and management into pre-determined categories and then thematic analysis to identify patterns of data within and between categories
demain2015-treatment-burden-long-term-conditions
not defined in this paper's own words; coding qualitative data against a framework fixed in advance
gallacher2013-treatment-burden-concept
Data were analysed using framework synthesis [43] , [44] under a coding framework informed by Normalization Process Theory (NPT) [42] . NPT is a robust analytic framework for understanding the organisation and operationalisation of tasks or practices (their implementation), of making them routine elements of everyday life (their embedding), and of sustaining embedded practices in their social cont
not defined in this paper's own words; autopoietic synthesis of biology and information
allen2016-cognitivism-autopoiesis-embodied-mind
Clearly, the active inference account satisfies the criteria for a radically embodied theory of mind. According to the free energy principle, an organism is best understood as a system of mutually interlocking systems; the body, mind and environment are inextricably bound up in the organism’s free energy minimization: in fact, all the heavy lifting done by active inference is in preserving a degre
not defined in this paper's own words; framework in which living systems must infer in order to survive
cooke2021-what-is-consciousness-integrated-information
Under the framework of the free energy principle, living systems can be seen as needing to engage in a process of inference in order to survive [ 29 , 32 , 33 , 34 , 35 , 36 ].
not defined in this paper's own words; the stimulus dimension the map is built on
Wong2019-tonotopic-and-non-auditory-organization-of-t
Each subplot shows the average ΔF/F b to a stimulus of the specified frequency and intensity.
not defined in this paper's own words; usual recurrence of contact with the same individual
mossong2008-social-contacts-mixing-infectious-disease
Diaries recorded basic sociodemographic information about the participant, including employment status, level of completed education, household composition, age, and sex. Participants were assigned a random day of the week to record every person they had contact with between 5 a.m. and 5 a.m. the following morning. Participants were instructed to record contacted individuals only once in the diary
frequency selectivity is defined operationally as sparseness of frequency tuning
Blackwell2020-auditory-cortex-shapes-sound-responses-in-th
To examine frequency selectivity of neurons, sparseness of frequency tuning was computed as:
not defined in this paper's own words; how narrowly a neuron responds across frequency; operationalised here as sparseness
Blackwell2020-auditory-cortex-shapes-sound-responses-in-th
We are using a measure sparseness to measure frequency selectivity within an individual neuron as it is less sensitive to the shape of the frequency response function than gaussian widths (Aizenberg et al., 2015).
not defined in this paper's own words; a functional network of frontal and parietal regions
palmqvist2017-amyloid-default-mode-network
Figure 2 shows that early Aβ accumulation predominantly overlapped with the DMN (Jaccard coefficient, JC, 0.14), but also with the frontoparietal network (JC 0.07).
not defined in this paper's own words; the cognitive-control network implicated by the connectivity analysis in mathematical creativity
Li2025-meta-analysis-of-fmri-studies-related-to-mat
The MACM analysis further highlights the importance of the frontoparietal network, a key player in cognitive control, for mathematical creativity.
Fourier transform
loron2024-mathematical-description-fossilization
Fourier transform infrared spectrometry
ross2021-polyester-fibres-arctic-ocean
all the health-related attributes that enable people to be and to do what they have reason to value
bautmans2022-vitality-capacity-definition
what is valued by older people and the extent to which they are able to function aligned with values; to pursue valued objectives with dignity
huang2024-socially-supported-sleep-older-adults
not defined in this paper's own words; experimentally curated or automatically supplied information attached to protein sequences
bateman2020-uniprot-the-universal-protein-know
The aim of the UniProt Knowledgebase is to provide users with a comprehensive, high-quality and freely accessible set of protein sequences annotated with functional information. In this article, we describe significant updates that we have made over the last two years to the resource. The number of sequences in UniProtKB has risen to approximately 190 million, despite continued work to reduce sequ
not defined in this paper's own words; gene-function annotations transferred between sequences
cantalapiedra2021-eggnog-mapper-v2-functional-annotation
Inference of gene function via orthology, rather than by homology detection, is generally considered the most reliable approach for transferring functional information between molecular sequences, as orthologs are expected to retain function more often than paralogs ( Gabaldón and Koonin 2013 ; Glover et al. 2019 ). However, since delineating orthology is highly demanding (both computationally and
Functional integration is defined as follows: Key support functions and activities (i.e., financial, management and information systems) structured around the primary process of service delivery, to coordinate and support accountability and decision-making between organisations and professionals to add overall value to the system.
valentijn2013-understanding-integrated-care-a-comprehensive-conceptual-framework
not defined in this paper's own words; one of the two cortical organizational principles used to conceptualize cognition as a network phenomenon
sporns2005-human-connectome
A potential theoretical framework for conceptualizing cognition as a network phenomenon is based on two main organizational principles found in the cerebral cortex, functional segregation, and functional integration [ 6 , 7 ].
not defined in this paper's own words in this sentence
thiele2024-explanation-over-performance-machine-learning
Due to different functional magnetic resonance imaging (fMRI) tasks and intelligence assessments, only HCP's g and g F models
not defined in this paper's own words; brain imaging of blood-oxygen-dependent signals
beaty2015-default-executive-network-creativity
Using functional magnetic resonance imaging (fMRI), we explored this question by examining dynamic interactions between brain regions during a divergent thinking task.
From this point forward, we will use the term “functional similarity” when referring to the similarity between two gene products given by the semantic similarity between the sets of GO terms with which they are annotated.
pesquita2009-semantic-similarity-in-biomedical-ontologies
overlap of communications by Jaccard similarity: a high value means two pathways have similar major senders and receivers, and so similar or redundant roles
jin2021-cellchat
where G and G’ are two signaling networks and E ( G ) is the set of communications in signaling network G . High degree of functional similarity indicates major senders and receivers are similar, and it can be interpreted as the two signaling pathways or two ligand-receptor pairs exhibit similar and/or redundant roles.
not defined in this paper's own words; the base logic with only introduction and elimination rules, below intuitionistic and orthologic
holliday2023-fundamental-nonclassical-logic
In this paper, we begin in Section 2 with a Fitch-style natural deduction system for a propositional logic in the signature with conjunction, disjunction, and negation that contains only the introduction and elimination rules for the connectives. We defer the addition of the universal and existential quantifiers with their introduction and elimination rules to Section 5. Starting from the system w
the Fitch-style provability relation whose only rules are the introduction and elimination rules for the connectives
holliday2023-fundamental-nonclassical-logic
We will define when a formula 𝜓 is provable from a formula 𝜑 , denoted 𝜑 ⊢ 𝐹 𝜓 , using a Fitch-style natural deduction system [13,14] (based on Jaskowski’s approach in [25]). We chose ’ 𝐹 ’ for fundamental logic or rather fundamental propositional logic, as we introduce a first-order extension in Section 5. To represent an argument with multiple assumptions, conjoin the assumptions with ∧ into a s
not defined in this paper's own words; eukaryotic living members of microbiota
berg2020-microbiome-definition-re-visited-o
The microbiota comprises all living members forming the microbiome. Etymology and differences of both terms are explained in Table 2 . Bacteria, archaea, fungi, algae, and small protists should be considered as members of the microbiome [ 25 ]; most microbiome researchers agree with this definition. The integration of phages, viruses, plasmids, and mobile genetic elements is one of the most contro
not defined in this paper's own words; kingdom with incomplete marine genera data
mora2011-how-many-species-earth-ocean
Since higher taxonomic levels are described more completely ( Figure 1A–1E ), the resulting error from incomplete inventories should decrease while rising in the taxonomic hierarchy. Recalculating the number of species while omitting all data from genera yielded new estimates that were mostly within the intervals of our original estimates ( Figure S3 ). However, Chromista (on Earth and in the ocea
FVB is an inbred albino strain which carries a recessive allele causing retinal degeneration ( Pittler and Baehr, 1991 ; Taketo et al., 1991 ).
Sloin2022-hybrid-offspring-of-c57bl-6j-mice-exhibit-im
not defined in this paper's own words; the other progenitor - blind, and chosen anyway
Sloin2022-hybrid-offspring-of-c57bl-6j-mice-exhibit-im
Previous work has shown that offspring of C57BL/6J (C57) and FVB/NJ (FVB) mice consume more alcohol than either progenitor, serving as a preferable model for alcohol consumption ( Blednov et al., 2005 , 2010 ).
genetic algorithm
zhang2020-gadd45b-multiple-myeloma-model
gestational age
romanis2020-viability-abortion-law
not defined in this paper's own words; inhibitory neurons, imaged through Gad2;Ai96; LARGER SOMA SIZE and otherwise not distinguishable here
Wong2019-tonotopic-and-non-auditory-organization-of-t
GABAergic cells had a larger soma size, as reported previously (cat: Oliver et al., 1994 ; rat: Merchán et al., 2005 ).
not defined in this paper's own words; inhibitory transmitter phenotype, which cuts across both morphological groups
Goyernd-a-novel-class-of-inferior-colliculus-princip
Both disc-shaped and stellate cells can be glutamatergic or GABAergic, an indication that each of these morphological groups consists of at least two neuron types ( Oliver et al., 1994 ).
not defined in this paper's own words; the amplitude, which comes apart from selectivity
Chen2019-differential-cell-type-dependent-brain-state
Neuronal activity in the cortex is also modulated by locomotion: tuning selectivity typically remains unchanged, response gains are affected, but the sign of the effect depends on modality. In ACx, the response gains are decreased 20 , 21 . In visual cortex (VCx), the gains are increased
not defined in this paper's own words; the slope of the response against sound level, reduced at the nerve and increased in cortex
Kumar2023-cell-type-specific-plasticity-of-inhibitory
1c–e ), and reduced the gain of the AN sound-evoked activity, the slope of ABR wave I amplitude against sound level, (Fig.
Contrast adaptation may affect multiple neuronal response properties, but is accomplished principally by adjustments in response gain that compensate for the distribution of stimulus levels in a given sensory environment. This specific form of contrast adaptation is known as contrast gain control (or contrast normalization).
Lohse2020-neural-circuits-underlying-auditory-contrast
Gain control in this context refers to the general enhancement or suppression of PN responses, independent of specific transformations of stimulus selectivity.
Yavorska2016-somatostatin-expressing-inhibitory-interneur
not defined in this paper's own words; enhancement or suppression of principal-cell responses, DIVISIVE OR SUBTRACTIVE
Yavorska2016-somatostatin-expressing-inhibitory-interneur
This illustrates that whether gain control is divisive or subtractive is dynamic and stimulus-dependent, rather than a fixed property of a given cell type.
an AppStore-like community exchange for installable Galaxy tools, workflows, and visualizations
afgan2018-galaxy-platform-accessible-reproducible-collaborative
The Galaxy ToolShed ( 11 ) assumes the role of an AppStore for Galaxy instances by hosting thousands of tools. The ToolShed improves tool availability, deployment, and portability across Galaxy servers and computing environments.
not defined in this paper's own words; the community repository for tools, workflows, and visualizations
afgan2018-galaxy-platform-accessible-reproducible-collaborative
The Galaxy ToolShed ( https://toolshed.g2.bx.psu.edu/ )—a community-driven resource for the dissemination of Galaxy tools, workflows, and visualizations. This server functions as an ‘AppStore’ for Galaxy servers where developers and Galaxy admins can host, share, and install Galaxy tools, workflows and visualizations.
The New Zealand 2003 Gambling Act definition is broader, describing harm as ‘any kind of harm or distress arising from, or caused or exacerbated by, a person’s gambling’. This definition includes psychological or emotional impacts of gambling, as well as presumably more concrete forms of harm, such as financial loss.
langham2015-understanding-gambling-related-harm-proposed
The Queensland definition describes harm as a ‘range of adverse consequences’, in which ‘the safety or wellbeing of gambling consumers or their family or friends are placed at risk’ and/or negative impacts extending to the broader community. In describing harm as a set of impacts and consequences, the Queensland definition is clear that gambling harms are the outcome of problematic gambling, rather than problematic gambling itself.
langham2015-understanding-gambling-related-harm-proposed
not defined in this paper's own words; the negative outcomes arising from gambling, whether or not they are symptomatic of a disorder - and, the paper says, under-measured because of that confusion
langham2015-understanding-gambling-related-harm-proposed
Whilst there is no single internationally agreed-upon definition of harm in relation to gambling, there are consistent patterns of interpretation throughout the literature that suggest some degree of convergence in the understanding of gambling-harm. Unlike indicators of gambling disorders or problematic behaviours, measures that specifically target gambling harm are under-developed.
not defined in this paper's own words; hierarchical mixture model for overdispersed counts
mcmurdie2014-rarefying-microbiome-data-inadmissible
Variation in the read counts of features between technical replicates have been adequately modeled by Poisson random variables [9] . However, we are usually interested in understanding the variation of features among biological replicates in order to make inferences that are relevant to the corresponding population; in which case a mixture model is necessary to account for the added uncertainty [1
not defined in this paper's own words; the other name for the same distribution, stated as such by the paper
love2014-deseq2
We model read counts K ij as following a negative binomial distribution (sometimes also called a gamma-Poisson distribution) with mean μ ij and dispersion α i .
a GCN extension assigning different attention weights to neighboring nodes
jiang2021-graph-neural-networks-molecular-representation
GAT is an extension of the vanilla GCN model, and the biggest distinction between vanilla GCN and GAT is the way of neighboring information aggregation. In the vanilla GCN model, the graph convolution operation aggregates the normalized sum of neighboring information.
not defined in this paper's own words; graph attention network
jiang2021-graph-neural-networks-molecular-representation
The present study attempts to give a comprehensive evaluation of descriptor-based and graph-based models on 11 public datasets with different property endpoints. Four ML algorithms were used to develop the descriptor-based models, including SVM, extreme gradient boosting (XGBoost), RF and deep neural networks (DNN). In order to better represent the chemical and structure features of the molecules
Glioblastoma
schiffer2018-glioblastoma-niche-concept
Guaymas Basin
dombrowski2018-guaymas-basin-microbial-versatility
gyrotropic birefringence
tokura2018-nonreciprocal-responses-quantum-materials
Glioblastoma Multiforme
lao2017-deep-learning-radiomics-glioblastoma
glioblastoma
cheng2012-temporal-order-pathway-alterations
global circulation models
thuiller2019-uncertainty-global-biodiversity-scenarios
global climate models
tabari2020-climate-flood-extreme-precipitation
Gestational diabetes mellitus
yessoufou2011-maternal-diabetes-metabolic-memory
not defined in this paper's own words; gestational diabetes mellitus - the class encompassing impaired glucose tolerance and diabetes under the WHO clarification
wendland2012-gestational-diabetes-and-pregnancy
The WHO adopted the 2 h 75 g OGTT in pregnancy, recommending the same diagnostic cut points established for the diagnosis of impaired glucose tolerance outside of pregnancy [ 2 , 3 ]. In 1999, WHO clarified that GDM encompassed impaired glucose tolerance and diabetes (fasting ≥ 7 mmol/l or ≥ 126 mg/dl; 2 h plasma glucose ≥ 7.8 mmol/l or 140 mg/dl) [ 6 ] and, over the years has maintained their rec
Red List category weight representing extinction risk on a logarithmic scale
isaac2007-mammals-edge-conservation-priorities-threat-phylogeny
In order to represent a useful tool in priority setting, ED scores must be applicable in real phylogenies of large taxonomic groups. To do this, we modified the basic procedure described above to control for missing species, incomplete phylogenetic resolution and uncertainty in node ages (see Materials and Methods ). The approach is implemented using a dated phylogeny of the Class Mammalia that is
general equilibrium
diem2024-firm-production-networks-predictability, ge2021-agent-based-global-food-trade
not defined in this paper's own words; Butler's idea that repeated acts produce gender instead of expressing a prior essence
strazzeri2024-gender-postcolonial-studies
The theoretical process that has led to the defeat of gender has been guided by Judith Butler, who has proposed a performative theory that is based on the Freudian idea that personal identity is shaped by the concept of normality: the thesis is that gender performativity forms gender.
that gender is created through its own performance
morgenroth2021-gender-trouble-binary
disrupting the gender binary to dismantle the oppressive system of patriarchy and compulsory heterosexuality
morgenroth2018-gender-trouble-social-psychology
disruption occurs when one of character, costume and script does not align with the other two
morgenroth2021-gender-trouble-binary
Disruption (i.e., gender trouble) occurs when one of these core elements does not align with the other two, for example, a woman acting assertively or a man looking feminine.
ways to challenge the performative, reinforcing cycle of the gender/sex binary
morgenroth2021-gender-trouble-binary
not defined in this paper's own words; the annotation graph queried for overabundant functions among selected genes
gentleman2004-bioconductor-open-software-development
We turn our attention briefly to the use of the Gene Ontology (GO) annotation in conjunction with these data. We first identify the set of unique LocusLink identifiers among our selected Affymetrix probes. The function GOHyperG is found in the GOstats package. It carries out a hypergeometric test for an overabundance of genes in our selected list of genes for each term in the GO graph that is indu
not defined in this paper's own words; the standard vocabulary whose graph the measures are computed over
schlicker2006-a-new-measure-for-functional-simil
The Gene Ontology (GO) is divided into three orthogonal ontologies, biological process , molecular function , and cellular component . The three ontologies are represented as directed acyclic graphs (DAG) in which nodes correspond to terms and their relationships are represented by edges. Each node can have several parents and several children. There are two types of relationships. "is-a" indicate
narrow against general AI, with general AI defined by solving an unfamiliar task without human intervention
ryan2020-in-ai-we-trust-ethics-artificial-i
Whereas, general AI, or artificial general intelligence (AGI), ‘is an AI system with generalized human cognitive abilities.
not defined in this paper's own words; the other half of the distinction the paper insists on before arguing about trust
ryan2020-in-ai-we-trust-ethics-artificial-i
Another important issue is the differentiation between narrow AI and general AI. Narrow AI is a system that is designed and used for specific or limited tasks
not defined in this paper's own words in this sentence
diem2024-firm-production-networks-predictability
We next show that aggregating production networks also causes large discrepancies between FPN- and IPN-based production loss estimates in a general equilibrium (GE) framework.
not defined in this paper's own words; the paper says in it “trade volumes are expressed as mathematical equations of commodity prices”
ge2021-agent-based-global-food-trade
Conventional trade models are based on the general equilibrium (GE) theory in economics, where trade volumes are expressed as mathematical equations of commodity prices.
here a host or microbe defined purely by its position in the nested SBM matrices, not by dietary breadth as in ecology
cobolopez2022-stochastic-block-models-gut-microbiome
Such a nested organization entails that we can observe generalist and specialist groups of hosts and microbes.
not defined in this paper's own words; single broad-domain model paradigm
pereira2022-sleap-multi-animal-pose-tracking
modular design ensures that it is flexible. We find that SLEAP’s modular UNet architecture enables a ‘specialist’ paradigm in which small, lightweight models have just enough representational capacity to generalize to the low variability typically found in scientific data. This contrasts with the ‘generalist’ approach of training a single model that works on all datasets, a substantially harder ta
not defined in this paper's own words; per-gene model fitted to read counts under a negative-binomial distribution
love2014-deseq2
For each gene, we fit a generalized linear model (GLM) [ 12 ] as follows. We model read counts K ij as following a negative binomial distribution (sometimes also called a gamma-Poisson distribution)
not defined in this paper's own words; the two-part regression fitted per gene across the discrete and continuous halves
finak2015-mast-a-flexible-statistical-framew
We propose a two-part, generalized linear model for such bimodal data that parameterizes both of these features.
minimally model-dependent counterpart to the binary-coalescence search
abbott2016-gravitational-waves
GW150914 is confidently detected by two different types of searches. One aims to recover signals from the coalescence of compact objects, using optimal matched filtering with waveforms predicted by general relativity. The other search targets a broad range of generic transient signals, with minimal assumptions about waveforms. These searches use independent methods, and their response to detector
not defined in this paper's own words; search for generic transient signals evaluated separately from the binary-coalescence search
abbott2016-gravitational-waves
Search results from the generic transient search (left) and the binary coalescence search (right). These histograms show the number of candidate events (orange markers) and the mean number of background events (black lines) in the search class where GW150914 was found as a function of the search detection statistic and with a bin width of 0.2. The scales on the top give the significance of an even
not defined in this paper's own words in this sentence
zhang2020-gadd45b-multiple-myeloma-model
Several parameter values were reported in previous studies, while the remaining unknown parameters (i.e. those parameters where experimental data are unavailable or those that have no direct biological meaning) were fitted via the genetic algorithm (GA) in this paper.
not defined in this paper's own words; the global evolutionary search for the network weights
sabir2021-singular-models
The focus of the present study is to present a stochastic numerical computing framework based on Gudermannian neural networks (GNNs) together with the global and local search genetic algorithm (GA) and active-set approach (ASA), i.e., GNNs-GA-ASA. The designed computing framework GNNs-GA-ASA is tested for the higher order nonlinear singular differential model (HO-NSDM). Three different nonlinear s
not defined in this paper's own words; genome-wide scans for variant-trait associations
foley2021-colocalization-algorithm-genetic-risk
Genome-wide association studies (GWAS) have identified thousands of genomic regions affecting complex diseases.
not defined in this paper's own words; studies testing each genetic variant for association with a trait
lloyd-jones2019-polygenic-prediction-bayesian-regression
Through large consortia and biobank initiatives, sample sizes for genome-wide association studies (GWAS) are reaching a critical point, now for some traits greater than a million individuals, at which, and under optimal modelling conditions, the genetic predictors generated could approach their maximum (from theory) prediction accuracy for some traits 6 – 10 .
Genomics is a Big Data science and is going to get much bigger, very soon, but it is not known whether the needs of genomics will exceed other Big Data domains.
stephens2015-genomical
not defined in this paper's own words; profiling DNA and its variation
garciagutierrez2020-biomarkers-psychiatry
Consequently, metabolomics are of particular interest because, in contrast to genomics, captures the dynamic nature of the disease, and in contrast to proteomics, metabolomics measure the final products produced by complex interactions between proteins, signalling cascades and cellular environments.
a growing and evolving research discipline at the intersection between geomorphology, environmental history and archaeology
kluiving2015-geoarchaeology-niche-construction
a source of baseline data on the landscape before human influence
kluiving2015-geoarchaeology-niche-construction
As such the discipline can deliver ‘baseline’ data of the pre-human landscape in the discussion of HNC in order to determine which type of landscape was preferred at what time by ancient civilisations.
not defined in this paper's own words; pregnancy diabetes outcome
bull2020-world-health-organization-physical-activity-sedentary-behaviour-guidelines
There is high-certainty evidence that physical activity during pregnancy is associated with reduced gestational weight gain and reduced risk of gestational diabetes mellitus in pregnant women with overweight or obesity. There is high-certainty to moderate-certainty evidence that the incidence of gestational hypertension is no different between pregnant women who exercise and those receiving standa
not defined in this paper's own words; high blood sugar that first appears in pregnancy
yessoufou2011-maternal-diabetes-metabolic-memory
Gestational diabetes mellitus (GDM) and obesity are both complications which occur during pregnancy and substantially influence the development of offspring during fetal life and postnatally.
`any degree of glucose intolerance with onset or first recognition during pregnancy` - the part that `is largely accepted`, as against the threshold, which `has been controversial over the last three decades`
wendland2012-gestational-diabetes-and-pregnancy
The definition of gestational diabetes mellitus (GDM) as any degree of glucose intolerance with onset or first recognition during pregnancy is largely accepted. However, the precise level of glucose intolerance characterizing gestational diabetes has been controversial over the last three decades.
not defined in this paper's own words; parent-structure generation component
bento2020-open-source-chemical-structure-curation
A chemical curation pipeline has been developed using the open source toolkit RDKit. It comprises three components: a Checker to test the validity of chemical structures and flag any serious errors; a Standardizer which formats compounds according to defined rules and conventions and a GetParent component that removes any salts and solvents from the compound to create its parent. This pipeline has
the component generating parent structures from rules and salt-solvent lists
bento2020-open-source-chemical-structure-curation
GetParent : generates parent structures based on a set of rules and defined lists of salts and solvents
Grey Level Co-occurrence Matrix
cheng2016-computer-aided-diagnosis-deep-learning-breast
gray level co-occurrence
parmar2015-machine-learning-radiomic-biomarkers
the most aggressive primary brain tumor in adults
schiffer2018-glioblastoma-niche-concept
not defined in this paper's own words; a malignant primary brain tumour
cheng2012-temporal-order-pathway-alterations
When applied to primary glioblastoma (GBM) copy number data from The Cancer Genome Atlas (TCGA) project, RESIC identified a temporal order of pathway alterations consistent with the order of events in secondary GBMs.
generalized linear mixed effects models
lefcheck2015-biodiversity-ecosystem-multifunctionality
generalized linear mixed-effects models
shaw2024-tick-borne-pathogen-landscape-ecology
the biggest biodiversity data portal
troudet2017-taxonomic-bias-biodiversity-data
not defined in this paper's own words; the network aggregating digital species occurrence records
meyer2015-global-priorities-biodiversity-distributions
International efforts to mobilize and aggregate distribution data, most notably through the Global Biodiversity Information Facility (GBIF), have facilitated access to large quantities of digital species occurrence records from a variety of data sources, especially museum specimens and field observations 8 9 .
faster processing of global than local features in hierarchical stimuli
colzato2008-religion-controls-visual-attention
We investigated whether Calvinists and atheists, brought up in the same country and culture (the Netherlands), differ with respect to the way they attend to and process global and local features of visual stimuli. Cultural (and, possibly, other) differences in perceptual processing and attentional emphasis are assumed to be produced by social practice [7] , [8] that provides selective reward for a
not defined in this paper's own words; faster global than local processing
colzato2008-religion-controls-visual-attention
The square root of error percentages and median reaction times were analyzed by means of analysis of variance (ANOVA) using Target Level (global vs. local) as within- and Group (Calvinists vs. Atheists) as between-participants factor. The reaction time analysis showed a main effect of Target Level, F (1,38) = 215.32, p = .0003, MSE = 544.632, η 2 p = 0.85, which was modified by Group, F (1,38) = 8
not defined in this paper's own words; rise in global average surface air temperature, per K of which changes are expressed
tabari2020-climate-flood-extreme-precipitation
Extreme precipitation in humid regions increases with global warming (6.31%/K) at the Clausius–Clapeyron rate (Fig. 2 e).
not defined in this paper's own words; rising temperatures over recent decades
radchuk2019-adaptive-responses-climate-change
A meta-analysis focussing on birds, the taxon best represented in our dataset, suggests that global warming has not systematically affected morphological traits, but has advanced phenological traits.
By assigning CO 2 a value of 1 GWP, the warming potentials of these other gases can be expressed on a CO 2 -equivalent basis: CH 4 has a GWP of 25, and N 2 O has a GWP of 298 [1] .
oonincx2010-an-exploration-on-greenhouse-gas-and-ammonia
Global warming potential was expressed in CO 2 -equivalents (CO 2 -eq); the sum of CO 2 , CH 4 , and N 2 O emissions.
oonincx2012-environmental-impact-of-the-production-of-mealworms
Graph Neural Network
han2022-learning-physics-consistent-particle-interactions, wang2021-scgnn-graph-neural-network-single-cell
not defined in this paper's own words; graph neural network for molecular representations
jiang2021-graph-neural-networks-molecular-representation
Molecular property modelling, which assists in hunting for chemicals with desired pharmacological and ADME/T (absorption, distribution, metabolism, excretion, and toxicity) properties, is one of the most classical cheminformatics tasks [ 1 , 2 ]. A variety of machine learning (ML) approaches, such as Naive Bayes (NB) [ 3 – 5 ], k-Nearest Neighbors (k-NN) [ 6 ], logistic regression (LR) [ 7 , 8 ],
acyclic relation set safe for annotation propagation and recommended for most GO software
aleksander2023-the-gene-ontology-knowledgebase-in
go-basic contains the types of information that has been available for GO from the beginning of the project; hence, it only contains is a, part of, regulates, negatively regulates, and positively regulates relationships and excludes relationships that cross different aspects (BP, MF, or CC) of the ontology. This edition of the ontology is guaranteed to be acyclic and can safely be used to selectiv
not defined in this paper's own words; acyclic GO edition recommended for most software tools
aleksander2023-the-gene-ontology-knowledgebase-in
GO provides three editions of the ontology on the download page ( http://geneontology.org/docs/download-ontology/ ) to accommodate various applications: go-basic, go, and go-plus ( Table 6 ). All GO terms, including obsolete terms and term metadata such as definitions, cross-references, and synonyms, are available in all three editions. These editions differ in the set of relations they contain
a highly structured model linking gene-product molecular activities by causal relations and adding location and process context
aleksander2023-the-gene-ontology-knowledgebase-in
GO-CAMs are models of causal influences between gene products ( Thomas et al. 2019 ) or pathways. More precisely, a GO-CAM links the activities (GO MFs) of gene products together by causal relations that specify the effect of one activity on the other. Each element of a GO-CAM is an instance of an ontology class or other standard database identifiers, so GO-CAMs are highly structured and amenable
not defined in this paper's own words; a singular causal activity model used for pathway-context annotation
aleksander2023-the-gene-ontology-knowledgebase-in
We have also clarified the level of specificity at which MF terms should be represented in GO. For example, we now strive to create GO terms that represent the range of in vivo substrate specificity of an enzyme or transporter. This is in contrast to earlier guidelines, in which a GO term was created for each separate molecular substrate tested in a single, isolated experimental assay or result, w
fully axiomatized GO edition that links into external ontologies
aleksander2023-the-gene-ontology-knowledgebase-in
go additionally includes has part and occurs in relationships that link terms across different aspects of the ontology (for example, a BP can have a has part relation to a MF term or an occurs in relation to a CC). This edition is not acyclic and annotations should not be propagated across all the relationship types that it contains. This edition should not be used in most software tools that rely
not defined in this paper's own words; fully axiomatized edition with external-ontology links
aleksander2023-the-gene-ontology-knowledgebase-in
GO provides three editions of the ontology on the download page ( http://geneontology.org/docs/download-ontology/ ) to accommodate various applications: go-basic, go, and go-plus ( Table 6 ). All GO terms, including obsolete terms and term metadata such as definitions, cross-references, and synonyms, are available in all three editions. These editions differ in the set of relations they contain
OPERATIONALLY, EMPLOYABILITY PLUS AN ABSENCE OF RECORDS. `in good health, permitting a full time job without restriction`, with `No information ... about habits ... and possible comorbidities`. The second cohort uses a stricter sense - `carefully selected on the basis of the absence of any chronic disease or substance/medications` - so the paper carries two senses of health and validates one against the other
forget2017-what-is-the-normal-value-of-the-ne
Our goal is to identify the higher boundary observed in a population in good health, but not excluding non-debilitating disease, tobacco use or oral contraception. Therefore, it would be important to compare the results to those obtained in a second, and independent, sample (n = 29) of normal controls, strictly selected on the basis of perfect health, coming from an historical cohort. This cohort
`permitting a full time job without restriction, and without any active disease, including cancer and infectious disease` - with no data on tobacco or comorbidity
forget2017-what-is-the-normal-value-of-the-ne
Typically, these subjects were in good health, permitting a full time job without restriction, and without any active disease, including cancer and infectious disease and are representative of the population as a whole.
not defined in this paper's own words; clarity and completeness of a report, separable from whether the underlying research is good
vonelm2007-strobe
we used several examples of good reporting from studies whose results were not confirmed in further research – the important feature was the good reporting, not whether the research was of good quality
sufficient methods and results detail for critique, interpretation, reliability assessment, and repetition
kilkenny2010-arrive-guidelines-reporting-animal-research
Scrutiny by scientific peers has long been the mainstay of “quality control” for the publication process. The way that experiments are reported, in terms of the level of detail of methods and the presentation of key results, is crucial to the peer review process and, indeed, the subsequent utility and validity of the knowledge base that is used to inform future research. The onus is therefore on t
a de-national or de-political market and social supply of public products
wang2021-china-analytical-concept
the Western notion brought to China around 2000, centred on good governance
wang2021-china-analytical-concept
In the late 1990s, especially at the beginning of the twenty-first century, the Western concept of “governance” was introduced to China, with a focus on “good governance”
the authors' rhetorical name for rushed, uncritical use of LLMs in psychology
abdurahman2024-llms-psychological-research
Here, we highlight the risks associated with the rushed application of these technologies to psychological research, a practice we call “GPTology.”
the hurried and unjustified application of LLMs either as “replacements” for human participants, or as an off-the-shelf “one-size-fits-all” method in psychological text analysis
abdurahman2024-llms-psychological-research
not defined in this paper's own words; a neural network propagating information between neighbouring graph nodes
wang2021-scgnn-graph-neural-network-single-cell
Recently, the emerging graph neural network (GNN) has deconvoluted node relationships in a graph through neighbor information propagation in a deep learning architecture
not defined in this paper's own words in this sentence
han2022-learning-physics-consistent-particle-interactions
The origin of these discrepancies lies in the design of the GN approach, which does not sufficiently constrain the output space, and clearly demonstrates the need for a physics-consistent Graph Neural Network (GNN) framework for particle interactions.
a model recursively aggregating atom and bond information to learn molecular representations
jiang2021-graph-neural-networks-molecular-representation
Essentially, GNN aims to learn the representations of each atom by aggregating the information from its neighboring atoms encoded by the atom feature vector and the information of the connected bonds encoded by the bond feature vector through message passing across the molecular graph recursively (Fig. 1 ), followed by the state updating of the central atoms and read-out operation. Then, the learn
not defined in this paper's own words; the carbon sheets confining the tin layers
lei2016-tin-quantum-sheets-co2-reduction
Moreover, the presence of highly-conductive graphene could enhance the overall electronic conductivity, which was confirmed by their lowest interfacial charge-transfer resistance in Fig. 5c
not defined in this paper's own words; the most widely studied 2D material, lacking a bandgap
chen2015-sandwiched-black-phosphorus-quantum-oscillations
Graphene 1 , 2 , being the most widely studied material, has shown rich physics and high mobility, but the absence of a bandgap 1 , 2 limits its applications.
not defined in this paper's own words; interactive labeling, training and proofreading interface
pereira2022-sleap-multi-animal-pose-tracking
The desire to understand how the brain generates and patterns behavior has driven rapid methodological innovation in tools to quantify natural animal behavior. While advances in deep learning and computer vision have enabled markerless pose estimation in individual animals, extending these to multiple animals presents unique challenges for studies of social behaviors or animals in their natural en
not defined in this paper's own words; point-and-click interface for configuring analyses
carpenter2006-cellprofiler
Most image analysis projects, even for new cell types or assays, can be accomplished simply by pointing and clicking using CellProfiler's graphical user interface (Figure 1a ). The software uses the concept of a 'pipeline' of individual modules (Figure 1b ; Additional data file 2). Each module processes the images in some manner, and the modules are placed in sequential order to create a pipeline:
not defined in this paper's own words; X-ray scattering at grazing incidence that reveals molecular packing in films
liu2014-polymer-solar-cells-aggregation
Grazing incident wide-angle X-ray diffraction (GIWAXS) 26 reveals the molecular packing and orientational texture of pure PffBT4T-2OD and PffBT4T-2OD:fullerene blend films.
not defined in this paper's own words; the X-ray method used to study molecular packing and crystallinity
sun2018-low-cost-polymer-donor-solar-cells
Here, the grazing incident wide-angle X-ray diffraction (GIWAXS) was employed to study the effect of different post treatments on the molecular packing and material crystallinity features within the PTQ10: IDIC blend films.
a policy term that captures the need for functional ecosystems that deliver ecosystem services
angelstam2013-transdisciplinary-research-definition
GI is defined as a “strategically planned network of natural and semi-natural areas with other environmental features designed and managed to deliver a wide range of ecosystem services” (European Commission 2013 ).
hansen2014-from-multifunctionality-to-multiple-ecosystem-services-a
not defined in this paper's own words; a person's connection with or commitment to a group
ashokkumar2022-group-identity-natural-language
To what degree can we determine people's connections with groups through the language they use?
not defined in this paper's own words; collective orientation inferred from plural-pronoun use
su2020-covid-lockdown-weibo-twitter-psycholinguistic
In Wuhan, the uses of the first-person plural pronouns, second-person plural pronoun increase after a lockdown, while the use of first-person singular pronoun decreases. Previous reports confirm that first-person singular pronouns show attention to the self, whereas most other pronouns suggest attention to other individuals [ 36 ]. Moreover, “we” implies a sense of group identity sometimes [ 37 ].
a feed-forward neural network using the Gudermannian function as its activation
sabir2021-singular-models
The models based on ANNs with the activation Gudermannian function are introduced by the scientists to solve different systems that arise in many areas. The HO-NSDM has been solved by using the stochastic procedures by implementing the Log-sigmoid function as a neural network. The Gudermannian function has never been implemented nor explored to solve the HO-NSDM. Thus, we are interested in explori
not defined in this paper's own words; a feed-forward network with Gudermannian activation solving the model
sabir2021-singular-models
The focus of the present study is to present a stochastic numerical computing framework based on Gudermannian neural networks (GNNs) together with the global and local search genetic algorithm (GA) and active-set approach (ASA), i.e., GNNs-GA-ASA. The designed computing framework GNNs-GA-ASA is tested for the higher order nonlinear singular differential model (HO-NSDM). Three different nonlinear s
On September 14, 2015 at 09:50:45 UTC, the LIGO Hanford, WA, and Livingston, LA, observatories detected the coincident signal GW150914 shown in Fig. 1.
abbott2016-gravitational-waves
not defined in this paper's own words; the observed signal whose frequency-amplitude evolution indicates black-hole coalescence
abbott2016-gravitational-waves
The basic features of GW150914 point to it being produced by the coalescence of two black holes—i.e., their orbital inspiral and merger, and subsequent final black hole ringdown
an ideal substrate for 2D materials, for its flatness, bandgap, strength and lack of dangling bonds
kim2015-large-area-multilayer-hexagonal-boron-nitride
The h-BN layer has been recently demonstrated to be an ideal substrate for 2D materials due to its atomic flatness, large optical bandgap, superb mechanical strength, absence of dangling bonds and low dielectric screening 10 11 12 13 14 15 16 .
hexagonal boron nitride
kim2015-large-area-multilayer-hexagonal-boron-nitride
hematoxylin and eosin
litjens2016-deep-learning-histopathology
not defined in this paper's own words; abbreviation for hematoxylin and eosin staining
bankhead2017-qupath-open-source-digital-pathology
flexibility beyond IHC scoring in TMAs, we applied texture-based analysis to calculate the tumor stromal percentage in whole face representative tumor sections stained with hematoxylin and eosin (H&E) from 312 patients with stage II colon cancer from the same cohort. Several studies have reported that a higher intratumoral stromal percentage correlates with a worse prognosis in patients with stage
read broadly, a right for anyone to open public, and perhaps private, archives of public interest
gstrein2022-privacy-datafied-society
More broadly understood, it enables anyone to access information from public archives and potentially also from private sources in cases where this information might be of public interest (Gonzalez, 2015 , p. 649).
read narrowly, an individual right born under military dictatorship, covering oneself or close family
gstrein2022-privacy-datafied-society
Narrowly understood, it is an individual right that was developed in response to military dictatorship. It entitles a citizen to obtain information about oneself or close family members only.
require public authorities to provide all personal data relating to a certain case or allegation
gstrein2022-privacy-datafied-society
not defined in this paper's own words; conversion pressure driven strongly by agriculture
venter2014-targeting-global-protected-area-expansion-biodiversity
To account for the spatial variation in the cost of protected area expansion, we used a dataset on agricultural opportunity cost [18] , converted to 2012 US$ and with no data values filled using regularized spline interpolation with tension ( Figure 1C ). The dataset provides the estimated gross agricultural rents for terrestrial areas mapped at approximately the 5 km resolution. We use these data
not defined in this paper's own words; degradation avoided indirectly through protection
possingham2015-optimal-conservation-outcomes-restoration-protection
In our model, transitions of land between the four states are driven by two actions and two processes. The two actions, protection and restoration, are entirely determined by the managers. At each point in time across a T -year project, managers can allocate a varying proportion (0≤ u ( t )≤1) of a fixed annual budget ( B ) to protection, and the remainder 1— u ( t ) to restoration. We note that t
not defined in this paper's own words; declining response to repeated prompts
pennycook2022-nudging-social-media-accuracy
Another factor to consider is whether people would become habituated to accuracy prompts, thereby decreasing the impact of the intervention in the long run. A natural solution to this problem is for platforms to use a wide variety of accuracy nudges, constantly rotating which prompts are applied for any given user. Such variation should help to mitigate habituation. Accuracy prompts may also cause
not defined in this paper's own words; a slower reduction across days, in which SOM responsiveness moves the OPPOSITE way
Yavorska2016-somatostatin-expressing-inhibitory-interneur
This mechanism could explain short-term stimulus-specific adaptation in cortical neurons, but cannot explain habituation effects that persist across days.
a generative model inventing plausible-looking structure in regions that are in fact unstructured
abramson2024-alphafold3
The use of a generative diffusion approach comes with some technical challenges that we needed to address. The biggest issue is that generative models are prone to hallucination 35 , whereby the model may invent plausible-looking structure even in unstructured regions. To counteract this effect, we use a cross-distillation method in which we enrich the training data with structures predicted by Al
a word from perception and from language models, used here for a structural failure: a diffusion model inventing spurious order (compact structure) in regions that are in fact disordered
abramson2024-alphafold3
We note that the switch from the non-generative AF2 model to the diffusion-based AF3 model introduces the challenge of spurious structural order (hallucinations) in disordered regions (Fig. 5d and Extended Data Fig. 1 ). Although hallucinated regions are typically marked as very low confidence, they can lack the distinctive ribbon-like appearance that AF2 produces in disordered regions. To encoura
not defined in this paper's own words; features bypassed by CNN feature learning
voulodimos2018-deep-learning-for-computer-vision
Some of the strengths and limitations of the presented deep learning models were already discussed in the respective subsections. In an attempt to compare these models (for a summary see Table 2), we can say that CNNs have generally performed better than DBNs in current literature on benchmark computer vision datasets such as MNIST. In cases where the input is nonvisual, DBNs often outperform othe
not defined in this paper's own words; image features explicitly designed by people, such as shape, intensity and texture
lao2017-deep-learning-radiomics-glioblastoma
Although the number of handcrafted features can reach tens of thousands, these features are shallow and low-order image features.
not defined in this paper's own words; manually imposed scoring features minimized by the design
jumper2021-highly-accurate-protein-structure-prediction-alphafold
The methodology that we have taken in designing AlphaFold is a combination of the bioinformatics and physical approaches: we use a physical and geometric inductive bias to build components that learn from PDB data with minimal imposition of handcrafted features (for example, AlphaFold builds hydrogen bonds effectively without a hydrogen bond score function). This results in a network that learns f
may function as a lowest common denominator between morality and legislation
smajdor2014-harm-threshold-reproductive-ethics
Not all moral wrongs can feasibly be prohibited by law, but if those that involve harm to others are more identifiable and less subjective, then the harm principle may be a useful interface between morality and legislation. In short, the harm principle may function as a lowest common denominator.
the law ought not to forbid individuals to pursue their interests and activities, unless those interests or activities harm others [ 4 ]
smajdor2014-harm-threshold-reproductive-ethics
not defined in this paper's own words; aggregation used to define F1-measure
wood2019-improved-metagenomic-analysis-kraken-2
Using these categories, we define rank-level sensitivity as the proportion of input fragments that were true-positive classifications, or TP/(TP + VP + FN + FP). We define rank-level positive predictive value (PPV) as the proportion of classifications that were true positives (excluding vague positives), or TP/(TP + FP). Along with these definitions of rank-level sensitivity and PPV, we also defin
not defined in this paper's own words; aggregation weighting the worse performance measure
emms2015-orthofinder-whole-genome-comparisons
Where TP is the number of true positive orthogroup assignments (that is, correct assignments), FP is the number of false positive orthogroup assignments (that is, incorrect assignments) and FN is the number of false negative orthologue assignments (that is, missing assignments). The F-score is the harmonic mean of these two measures, where the harmonic mean weights towards the worst performing mea
Health Care Professional
laranjeira2023-therapeutic-adherence-mental-disorders
Human Connectome Project
thiele2024-explanation-over-performance-machine-learning
Healthcare Professionals
costeira2024-death-unpreparedness-covid
healthcare providers
hou2025-autonomy-support-telehealth
not defined in this paper's own words; the file container used to distribute the dataset
smith2017-ani1-dataset-organic-molecules
The data set is provided in an HDF5 based file in a Figshare data repository (Data Citation 1).
not defined in this paper's own words; the grouped file format used to distribute QM7-X
hoja2021-qm7x-quantum-mechanical-properties
The QM7-X dataset is provided in eight HDF5 based files in a ZENODO.ORG data repository 50 .
not defined in this paper's own words; high-entropy alloy nanoparticles used as electrocatalysts
hao2022-electronegativity-high-entropy-alloy-electrocatalysts
A series of nanoscale HEA catalysts have been applied for ammonia oxidation, water splitting, methanol oxidation, CO 2 reduction, and dye degradation, and they deliver superior performance than conventional alloys 7 – 13 .
not defined in this paper's own words; the CoMoFeNiCu high-entropy alloy nanoparticles used as catalysts
xie2019-high-entropy-alloy-ammonia-decomposition
Most of the HEA catalysts are much more active than the bimetallic Co-Mo and monometallic Ru, with the latter two giving NH 3 conversions of only 46 and 73% at 600 o C (Supplementary Fig. 14 ).
a complex process focused on human integrity during which one moves toward health, balance, and self-actualization with the help of treatments, care, potential internal healing forces and religious and spiritual sanctities associated with their culture and community
sadathoseini2023-healing-cross-cultural-concept
a process of creating a new feeling of homelikeness, which makes one whole with one’s body, expanding one’s world to the degree that allows for wellness
friedman2021-concept-of-recovery-meanings
not defined in this paper's own words; health results affected by behavior
vlaev2019-financial-incentives-health-behavior
The effect of individual behavior on health outcomes is considerable with estimates that up to 40% of premature deaths in the developed world are attributable to unhealthy behaviors, such as smoking, poor diet and sedentary lifestyle [ 1 ]. Reducing morbidity and mortality losses in the future is likely to depend as much on motivating changes in behavior as on developing new treatments or technolo
not defined in this paper's own words; how patients' health turns out after care
hou2025-autonomy-support-telehealth
Self-Determination Theory (SDT) highlights that autonomy support increases patients’ motivation for self-care behaviors, sustains health-promoting actions, and improves health outcomes ( 3 ).
not defined in this paper's own words; the clinical staff caring for the dying and their families
costeira2024-death-unpreparedness-covid
This period was characterized by sudden and rapid changes in the process of dying and grieving, not only for people who were dying but also for their families, informal caregivers, and even Healthcare Professionals (HCPs)
those directly involved in the process of identifying potential donors, information, request, procurement, and transplantation of organs
martinez-lopez2023-trust-organ-donation
not defined in this paper's own words; ageing well, read through health outcomes, life-course adaptation, or both
menassa2023-healthy-ageing-concepts-definitions
Healthy ageing (HA) has been defined using multiple approaches
the process of developing and maintaining the functional ability that enables well-being in older age
bautmans2022-vitality-capacity-definition
high-entropy alloys
li2020-high-entropy-alloy-nanocatalyst-electron-transfer, wang2024-scaling-laws-lattice-distortions
high-entropy-alloy family of materials
rost2015-entropy-stabilized-oxides
not defined in this paper's own words; cells expressing candidate ACE2 proteins
zhou2020-a-pneumonia-outbreak-associated-wi
ACE2 is known to be a cell receptor for SARS-CoV 14 . To determine whether 2019-nCoV also uses ACE2 as a cellular entry receptor, we conducted virus infectivity studies using HeLa cells that expressed or did not express ACE2 proteins from humans, Chinese horseshoe bats, civets, pigs and mice. We show that 2019-nCoV is able to use all ACE2 proteins, except for mouse ACE2, as an entry receptor to en
not defined in this paper's own words; malignant cells also carrying verified exon scrambles
salzman2012-circular-rnas-are-the-predominant
We began with the hypothesis that scrambled exons would generally be a sign of local genomic rearrangements in cancer. To our surprise, all examples of exon scrambling that we PCR-verified in leukemia samples were also detectable in HeLa cells and normal primary human cells, including peripheral blood collected from the same ALL patients in remission and H9 ES Cells. These results strongly suggest
a mental concept and is a negative psychological feeling that has the characteristics of anxiety and depression
azizi2023-helplessness-nurses-covid
emerges when family caregivers cannot provide the optimal care they want for their loved one, particularly in situations where they face financial restraints and a lack of resources
ananzeh2026-moral-distress-family-caregivers
when a person believes they are unable to change their stressful situation
hua2025-demoralization-concept-analysis
not defined in this paper's own words; histological stain abbreviated H&E
bankhead2017-qupath-open-source-digital-pathology
flexibility beyond IHC scoring in TMAs, we applied texture-based analysis to calculate the tumor stromal percentage in whole face representative tumor sections stained with hematoxylin and eosin (H&E) from 312 patients with stage II colon cancer from the same cohort. Several studies have reported that a higher intratumoral stromal percentage correlates with a worse prognosis in patients with stage
not defined in this paper's own words; the standard histology stain
litjens2016-deep-learning-histopathology
Microscopic analysis of hematoxylin and eosin (H&E) stained sections has been the basis for cancer diagnosis and grading for the past century 1 .
not defined in this paper's own words; the supremum of a cardinal function over subspaces
kocinac2022-permutation-degree-cardinal-properties
The current paper is devoted to the investigation of hereditary cardinal invariants (such as the hereditary density, the hereditary weak density, and the hereditary Lindelöf number) in the space of permutation degree.
the supremum of a cardinal function over all subspaces of the space
kocinac2022-permutation-degree-cardinal-properties
The cardinal invariants are considered as topological invariants with values in the class of all cardinal numbers, and are used to describe various topological properties of spaces. For example, the weight, 𝜋 -weight, network weight, density, character, Lindelöf number, tightness, and cellularity of a topological space X are some classical cardinal invariants. Many researches have been devoted to
a gap in collective hermeneutical resources puts a person or group at unfair disadvantage when making sense of their social experiences
kidd2017-epistemic-injustice-illness
structural, owed to features of the social world and not to particular agents
kidd2017-epistemic-injustice-illness
It is for this reason that hermeneutical injustice is structural and not agential, arising from specific contingent features of the social world – such as its educational practices and political arrangements – rather than from the activities of specific agents.
`These parents vaccinate their child but have significant concerns` - 20-30%, and `In Gust's study, they most closely correspond to the FENCE-SITTER`
leask2012-communicating-with-parents-about-v
The hesitant 20–30% These parents vaccinate their child but have significant concerns [ 29 ]. In Gust’s study, they most closely correspond to the ‘fence-sitter’ who only slightly agrees about the benefits and safety of vaccination and is neutral about their relationship and trust with their healthcare provider
not defined in this paper's own words; 20-30% - parents who vaccinate but have significant concerns
leask2012-communicating-with-parents-about-v
Five distinct parental groups were identified: the ‘unquestioning acceptor’ (30–40%), the ‘cautious acceptor’ (25–35%); the ‘hesitant’ (20–30%); the ‘late or selective vaccinator’ (2–27%); and the ‘refuser’ of all vaccines (<2%).
not defined in this paper's own words
breslauer2023-stability-political-physical-science
For example, heterogeneity in a physical system, and its cognate property of diversity of population in a society, can both make the system stronger, provided that the components are well integrated.
not defined in this paper's own words; variation among exosomes themselves - the third of three reasons the categories cannot be separated, alongside fluid complexity and cross-category property overlap
doyle2019-overview-of-extracellular-vesicles
This is due to the complexity of biological fluids from which exosomes are being isolated from, the drastic overlap in the physiochemical and biochemical properties between exosomes and different EVs, and the heterogeneity among exosomes themselves
uneven surface adsorption, indexed by the Sips model's gamma approaching zero
tao2020-cellulose-nanocrystal-graphene-oxide-adsorption
In this study, the γ of the Sips model is 0.3852, which is close to zero, indicating that the surface of CNCs-GO is not uniform, that is, the adsorption process is a multi-layer chemical adsorption on a heterogeneous surface.
not defined in this paper's own words; unequal variances linked to different denominators
mcmurdie2014-rarefying-microbiome-data-inadmissible
The variance of the proportion's estimate is multiplied by 10 when the total count is divided by 10. In this binomial example the variance of the proportion estimate is , a function of the mean. This is a common occurrence and one that is traditionally dealt with in statistics by applying variance-stabilizing transformations. We show in Text S1 that the relation between the variance and the mean f
not defined in this paper's own words; unequal expression variability
ritchie2015-limma-differential-expression
Expression values often show some degree of heteroscedasticity, either because there is a relationship between abundance and measurement precision, or because some treatment conditions are more heterogeneous than others. For example, tumours might be more variable than normal tissue. Concern for such effects has prompted some researchers to filter out low intensity observations or to use Welch's t
High-intensity functional training
feito2018-high-intensity-functional-training
set apart from HIIT by functional, resistance-based movements and by rest that is not prescribed
feito2018-high-intensity-functional-training
The most important differences are in terms of the use of functional movement patterns and resistance-based exercises, as well as the prescription of rest intervals.
not defined in this paper's own words; a near-equiatomic alloy of five or more principal elements with high configuration entropy
hao2022-electronegativity-high-entropy-alloy-electrocatalysts
Recently, high-entropy alloy (HEA) catalysts with near-equiatomic proportions, have attracted wide attention due to their unprecedented properties caused by high configuration entropy, lattice distortion, sluggish diffusion, and cocktail effects 4 – 8 .
HEAs are defined as alloys that have at least five principal elements in equimolar/equiatomic or near equimolar/equiatomic compositions and the concentration of each element is between 5% and 35%.
gorsse2017-additive-manufacturing-of-metals-a-brief-review
not defined in this paper's own words; an alloy of five or more metals in a single solid-solution phase
xie2019-high-entropy-alloy-ammonia-decomposition
Here we report on highly efficient ammonia decomposition using novel high-entropy alloy (HEA) catalysts made of earth abundant elements.
not defined in this paper's own words in this sentence
wang2024-scaling-laws-lattice-distortions
Using high-entropy alloys (HEAs), as an example, we investigate the influence of variations in inter-atomic separations for stabilizing and controlling their structural, mechanical, and thermodynamic properties.
not defined in this paper's own words; alloys of five or more elements in similar atomic ratios
li2020-high-entropy-alloy-nanocatalyst-electron-transfer
High-entropy alloys (HEAs) have attracted wide interest as catalytic materials in the past few years 13 – 16 .
not defined in this paper's own words; microscopy images collected in large numbers by advanced microscopes
carpenter2006-cellprofiler
Examining cells by microscopy has long been a primary method for studying cellular function. When cells are stained appropriately, visual analysis can reveal biological mechanisms. Advanced microscopes can now, in a single day, easily collect thousands of high resolution images of cells from time-lapse experiments and from large-scale screens using chemical compounds, RNA interference (RNAi) reage
not defined in this paper's own words; visual-validation imagery
venter2016-global-terrestrial-human-footprint-maps
High resolution images were used to visually interpret human pressures in 3460×1 km 2 sample plots randomly located across the Earth’s non-Antarctic land areas ( Fig. 3a ). Images for these plots were obtained from World Imagery 52 , which provides one meter or better satellite and aerial imagery in many parts of the world and lower resolution satellite imagery worldwide. The map features 0.3 m re
not defined in this paper's own words; analysis at detailed political-unit scale
ray2013-yield-trends-global-crop-production
Details of the method used, sensitivity to the number of years analyzed, as well as alternate regression methods are provided in Figures S6 and S9. The advantage of analyzing at high spatial resolution is that yield rates can be summarized for other unique levels. For example, we summarized the results for the Brazilian Legal Amazon ( Figure S12 and Table S2 ). We compared our global numbers with
not defined in this paper's own words; approximately four-kilometre global grid
abatzoglou2018-terraclimate-high-resolution-global-dataset
We present TerraClimate, a dataset of high-spatial resolution (1/24°, ~4-km) monthly climate and climatic water balance for global terrestrial surfaces from 1958–2015. TerraClimate uses climatically aided interpolation, combining high-spatial resolution climatological normals from the WorldClim dataset, with coarser resolution time varying (i.e., monthly) data from other sources to produce a month
not defined in this paper's own words; NGS-based pathogen and genome workflow
zhou2020-a-pneumonia-outbreak-associated-wi
High-throughput sequencing, pathogen screening and genome assembly Samples from patient BALF or from the supernatant of virus cultures were used for RNA extraction and next-generation sequencing (NGS) using BGI MGISEQ2000 and Illumina MiSeq 3000 sequencers. Metagenomic analysis was carried out mainly based on the bioinformatics platform MGmapper (PE_2.24 and SE_2.24). The raw NGS reads were first
not defined in this paper's own words; massively parallel sequencing of marker genes
froeslev2017-amplicon-post-clustering-curation
High-throughput sequencing (HTS) of genetic markers, which have already become standard in microbiology, is a promising tool for rapid, reproducible and thorough censuses of eukaryotic biodiversity in complex ecosystems
not defined in this paper's own words; ONE OF 24 RECORDS CARRYING THIS TERM AND, UNTIL NOW, THE ONLY QUOTE FOR ANY OF THEM. `the hippocampus is responsible for the formation and retrieval of memories` - two jobs, and the corpus's most-shared ungrounded term finally has a sentence behind it on one record
Camina2017-the-neuroanatomical-neurophysiological-and-p
Finally the hippocampus is responsible for the formation and retrieval of memories.
not defined in this paper's own words; the structure under review - known for episodic memory and spatial navigation, and considered here for sound
Billig2022-the-hearing-hippocampus
1 Introduction and motivation Given the two most well-known functions of the hippocampus – supporting episodic memory in humans ( Scoville and Milner, 1957 , Squire and Zola-Morgan, 1991 ) and spatial navigation in animals ( O’Keefe and Dostrovsky, 1971 ) – a review of this structure in relation to sound may seem an unlikely exercise.
a comprehensive patient care model based on nurturing the wholeness and respect of patients’ uniqueness to physical, mental, emotional and environmental strengths and challenges, valuing their beliefs and health experiences
motsaanaka2022-clinical-learning-opportunity
not defined in this paper's own words; care that must attend to the patient's culture and religious beliefs
sadathoseini2023-healing-cross-cultural-concept
Addressing patients’ culture, including their spiritual and religious beliefs is one of the requirements of holistic care because religious beliefs about health and disease affect patients’ care decisions [ 9 ]
not defined in this paper's own words; health taken as a whole, beyond psychological well-being alone
aryuwat2022-resilience-nursing-students-review
Therefore, resilience can help nursing students maintain their holistic health and well‐being and cope with stress during their nursing education
referenced the idea that being healthy was an essential component of wellbeing
garvey2021-aboriginal-wellbeing-model
hosts and their associated microbiota
destoumieuxgarzon2018-one-health-concept
a host and its associated microorganisms must be considered as an integrated unit in order to understand many biological and ecological features
moran2015-hologenome-helpful-hollow
first a host with one inherited symbiont, later a host with its whole microbial community
moran2015-hologenome-helpful-hollow
Holobiont was initially used to refer to a host and a single inherited symbiont [ 4 ] but was later extended to a host and its community of associated microorganisms, specifically for the case of corals [ 5 ].
a genetic unit that represents the combined genomes of a host and its associated microorganisms
moran2015-hologenome-helpful-hollow
the collective genome of host and microbiome
brussow2020-gut-dysbiosis-concept
not defined in this paper's own words; the body's upkeep of a stable internal state
panossian2021-adaptogenic-concept
These will and increase the nonspecific resistance to stress; the yin‐yang balance, a synonym of homeostasis (see the next section of this chapter); and vital energy or qi, which has a similar meaning as adaptability or a state of nonspecific resistance.
not defined in this paper's own words; literature term spanning both cell-internal and organismal steady-state processes
aleksander2023-the-gene-ontology-knowledgebase-in
With respect to ontology development, in addition to continuing to revise the ontology in response to recent discoveries, we see an immediate need for clearly delineating the level of biological organization at which a function is described. This includes distinguishing MFs from BPs, and distinguishing BPs that occur at the level of individual cells, versus those that occur at the level of multice
multiple meanings for the same term
smith2022-parental-sleep-sick-child
not defined in this paper's own words; one term with several meanings
powell2015-refined-compilation-implementation-strategies-eric
Research focusing on implementation strategies, defined as “methods or techniques used to enhance the adoption, implementation, and sustainability of a clinical program or practice” [ 1 ], has been prioritized in order to bridge the quality chasm in health and mental health services [ 2 - 5 ]. a However, efforts to identify, develop, and test implementation strategies have been complicated by a la
a dynamic process, a multidimensional “life force” that anticipates achieving a practically attainable and personally relevant good, with some degree of confidence despite marked uncertainty
antunes2023-hope-in-nursing-care
the justification for the Act, which may prove false for patients who cannot afford the drugs
mikami2017-orphan-drug-policy-history
The ongoing discussion about the extremely high price of some orphan drugs suggests that for some people living with rare diseases, the hope they have been given may turn out to be a false one.
The hotspot denotes a thickening of fields; a layering of the relational possibilities and intensities that occasion transmission.
brown2014-anthropology-viral-hemorrhagic-fevers
in disease ecology, a way of interrogating the spatial heterogeneity of pathogen transmission, pointing to sites where transmission is amplified
brown2014-anthropology-viral-hemorrhagic-fevers
In disease ecology, the notion of the hotspot has been developed as a way of interrogating the spatial heterogeneity of pathogen transmission, drawing attention to sites where transmission is amplified through particular characteristics of individuals, populations and/or environments within dense relational webs (DeGroote et al. 2008 ; Gatrell 2002 ; Meade and Emch 2010 ; Paull et al. 2012 ).
in this paper's anthropology, a heuristic that alerts to the contingent relationality through which outbreaks emerge, not a way of specifying causal factors
brown2014-anthropology-viral-hemorrhagic-fevers
It is not a means of prospectively or retrospectively specifying the factors that might lead (or have led) to transmission, but a way of alerting us to the radical and contingent relationality through which outbreaks emerge.
a comprehensive resource that systematically defines and logically organizes human phenotypes
kohler2020-the-human-phenotype-ontology-in-2021
not defined in this paper's own words; Human Phenotype Ontology resource and standard
kohler2020-the-human-phenotype-ontology-in-2021
The HPO is now a worldwide standard for phenotype exchange. The HPO has grown steadily since its inception due to considerable contributions from clinical experts and researchers from a diverse range of disciplines. Here, we present recent major extensions of the HPO for neurology, nephrology, immunology, pulmonology, newborn screening, and other areas. For example, the seizure subontology now ref
Health Promoting School
schulenkorf2021-school-health-literacy
hyperbolic polaritons
li2015-hyperbolic-phonon-polaritons-boron-nitride
the ability to legitimately exist as human ‘with twists and turns’ and to have the ability to create shared spaces for discretion with partners and groups
gstrein2022-privacy-datafied-society
the right to be confirmed as a unique person
almerud-osterberg2023-exposed-semantic-concept
not defined in this paper's own words; host gene complement contrasted with the microbiome
rinninella2019-what-is-the-healthy-gut-microbiota
The human gastrointestinal (GI) tract contains an abundant and diverse microbial community that gathers more than 100 trillion microorganisms \ [1\]. The density of bacterial cells in the colon has been estimated at 1011 to 1012 per milliliter which makes the colon one of the most densely populated microbial habitats known on earth \ [2\]. The gut microbiome encodes over 3 million genes producing
not defined in this paper's own words; host reference used to filter sequencing reads
zhou2020-a-pneumonia-outbreak-associated-wi
One sample (WIV04), collected from the bronchoalveolar lavage fluid (BALF), was analysed by metagenomics analysis using next-generation sequencing to identify potential aetiological agents. Of the 10,038,758 total reads—of which 1,582 total reads were retained after filtering of reads from the human genome—1,378 (87.1%) sequences matched the sequence of SARSr-CoV (Fig. 1a ). By de novo assembly an
not defined in this paper's own words; direct and indirect pressures represented by the maps
venter2016-global-terrestrial-human-footprint-maps
Remotely-sensed and bottom-up survey information were compiled on eight variables measuring the direct and indirect human pressures on the environment globally in 1993 and 2009. This represents not only the most current information of its type, but also the first temporally-consistent set of Human Footprint maps. Data on human pressures were acquired or developed for: 1) built environments, 2) pop
the actions taken by humans with the potential to harm nature
venter2016-global-human-footprint-biodiversity
We bred FVB/NJ females and C57BL/6J males to generate first-generation hybrid offspring (FVB/NJ x C57BL/6J)F1. The hybrid mice exhibit reduced anxiety-like behavior, improved learning, and enhanced long-term spatial memory. In contrast to both progenitors, hybrids maintain sensorimotor performance upon aging and exhibit improved long-term memory.
Sloin2022-hybrid-offspring-of-c57bl-6j-mice-exhibit-im
not defined in this paper's own words; the hybrid, and an abbreviation that is a prefix of the word it abbreviates
Sloin2022-hybrid-offspring-of-c57bl-6j-mice-exhibit-im
Authors have comparatively tested Hybrid (HYB) mice in the several behavioral paradigms, along with their electrophysiological properties and optogenetic assessments of their neurons.
Hybrids inherit one allele from the C57BL/6J parent, maintaining transgenic properties in a heterozygous manner.
Sloin2022-hybrid-offspring-of-c57bl-6j-mice-exhibit-im
In recent years, two sets of hybrid terms have emerged in the recent literature (since 2005) for denoting prefrontal regions in rodents. These terms combine the names of the cortical fields, prelimbic and infralimbic, with the term prefrontal cortex, e.g., “prelimbic prefrontal cortex” or “prelimbic medial prefrontal cortex.” Together with the various terms and acronyms described above for the Paxinos and Swanson atlases, it is clear that there are too many terms being used to describe the prefrontal parts of the rodent cortex. We hope that these alternative terms can be eliminated from future publications, as they are redundant, do not add clarity, and make it more difficult to track new findings and incorporate them into the existing literature.
Laubach2018-what-if-anything-is-rodent-prefrontal-cortex
not defined in this paper's own words; the electrochemical reduction producing H 2, here in alkaline solution
hao2022-electronegativity-high-entropy-alloy-electrocatalysts
We employ the HEAs as electrocatalysts for the alkaline hydrogen evolution reaction (HER) and successfully identify electronegativity-dependent preferences for active site adsorption of the intermediates OH * and H * during H 2 O dissociation and H 2 production steps (Fig. 1c ).
not defined in this paper's own words; the electrochemical reduction that produces hydrogen
li2020-high-entropy-alloy-nanocatalyst-electron-transfer
The Pt 18 Ni 26 Fe 15 Co 14 Cu 27 /C catalyst exhibits excellent electrocatalytic performance for hydrogen evolution reaction (HER) and methanol oxidation reaction (MOR).
not defined in this paper's own words; present-biased valuation of immediate versus delayed outcomes
vlaev2019-financial-incentives-health-behavior
If we are going to use incentive schemes to influence health behaviors, then it is important that we give them the best chance of working. Behavioral economics integrates insights from psychology with the laws of economics and provides a number of robust psychological phenomena that help to better explain human behavior. Individuals’ decisions in relation to incentives may be shaped by more subtle
present bias that makes today loom larger than future periods
vlaev2019-financial-incentives-health-behavior
The third phenomenon is hyperbolic discounting also known as ‘present bias’ [ 47 , 48 ]. Economists assume that our preferences over today versus tomorrow are the same as those over this time next week and this time in eight days. Although standard discounting simply says that we use the same discount rate in each period, evidence tells us that today looms much larger so that we discount very heav
not defined in this paper's own words; model-creation and training settings captured by configuration
pereira2022-sleap-multi-animal-pose-tracking
SLEAP supports multiple approaches to solving pose-estimation problems as well as more than 30 neural network architectures to learn from data (Fig. 1e ). To enable this flexibility as well as to ensure reproducibility, we implemented a configuration system that captures all hyperparameters related to model creation and training. These configuration files describe data-preprocessing steps, neural
predefined parameters fixed before the training process
sujeeun2020-nanofibrous-scaffold-performance
THE DEFINITION THIS BODY ADOPTED, AND ALMOST A THIRD OF THE ROOM VOTED AGAINST IT: 70.6% recommended `a rapid increase in tumor growth rate (minimum two-fold) compared to the expected growth rate`. THE >=75% CONSENSUS BAR IS NOT IN THIS QUOTE - it is stated separately at `Consensus was defined as >=75% agreement among subcommittee members`, already carried by this record's senses[0] and mechanisms[0]. Reading the two together is what shows 70.6% falling short of the paper's own threshold, and the two-quote span is why that comparison lives in a label and not in an evidence field.
cohen2019-the-society-for-immunotherapy-of-c
70.6% of the subcommittee recommended defining hyperprogression as “a rapid increase in tumor growth rate (minimum two-fold) compared to the expected growth rate.”
THREE RIVAL DEFINITIONS FROM THE LITERATURE, LISTED BY THE PAPER ITSELF, all quantitative and none equivalent: a RECIST-anchored 2-fold growth-rate ratio [90]; a three-part rule of TTF < two months AND >50% tumour burden increase AND >two-fold progression pace [91]; and a bare tumour growth kinetics ratio >= 2 [79]. THE NUMBER TWO APPEARS IN ALL THREE AND MEASURES A DIFFERENT QUANTITY IN EACH.
cohen2019-the-society-for-immunotherapy-of-c
Alternatively, other accepted definitions of hyperprogression found in the literature include: a “RECIST progression at the first evaluation and as a ≥2-fold increase of the tumor growth rate between the reference and the experimental periods” [ 90 ], “time-to-treatment failure (TTF) < two months, >50% increase in tumor burden compared to pre-immunotherapy imaging, and >two-fold increase in progre
before the 1960s not tied to blood pressure alone
nathoo2016-therapeutic-relaxation-britain
Until the 1960s, “hypertension” had been a disputed medical category, and the term was not used exclusively to relate to blood pressure.
not defined in this paper's own words; persistently raised blood pressure
cena2020-healthy-diet-definition
Dietary choices, for example, contribute to the risk for developing hypertension, hypercholesterolemia, overweight/obesity, and inflammation, which in turn increase the risk for diseases that are associated with significant morbidity and mortality, including cardiovascular disease, diabetes, and cancer [ 5 ].
not defined in this paper's own words; the loss seen when strain is cycled
feig2018-conductive-interpenetrating-network-hydrogels
For instance, compared with the highly stretchable PEDOT:PSS/ionic liquid conductor developed in our group (Supplementary Figure 4 ), C-IPN gels exhibit considerably less hysteresis, while cycling the strain at the same conditions.
not defined in this paper's own words; sweep-direction dependence of conductance caused by charge traps
chen2015-sandwiched-black-phosphorus-quantum-oscillations
In addition, the annealing process can significantly reduce the charge trap density in BP as no hysteresis effect is observed at room temperature
IC consist of several subregions that participate in different pathways 12 . Sensory information is relayed by the lemniscal or driver pathway and the nonlemniscal or modulator pathway in parallel 13 . Recently, the nonlemniscal pathway has gained widespread attention. Neurons in the nonlemniscal pathway are not only more broadly tuned and display stronger stimulus adaptation but also project to the non-sensory brain areas for innate behaviors 14 , 15 . In the auditory system, the lemniscal pathway includes the IC core (central IC (ICC)), ventral subregion of medial geniculate body (MGBv), and primary ACx, the nonlemniscal pathway includes the IC shell (dorsal and external IC (ICD and ICX, respectively)), dorsal and medial subregion of MGB (MGBd and MGBm, respectively), and non-primary ACx
Chen2019-differential-cell-type-dependent-brain-state
not defined in this paper's own words; the part nobody had tested
Chen2019-differential-cell-type-dependent-brain-state
About 1–4 FOVs near the medial part of IC shell L1 (Supplementary Fig.
Integrated Care Pathway
dalkin2015-realist-mechanism-concept
intermediate capillary plexus
campbell2017-retina-vascular-anatomy-oct-angiography
not defined in this paper's own words; the committee holding both the naming rules and the classification approval
lefkowitz2018-virus-taxonomy-the-database-of-the
Unlike for other groups of biological organisms, the ICTV charge extends not only to developing the guidelines for naming of taxa, but to establishing guidelines for taxonomic classification of viruses, and approving the proposed taxonomy and names before they become official.
the committee, which RENAMED ITSELF FROM NAMING TO CLASSIFYING: `established in 1966 as the International Committee on NOMENCLATURE of Viruses, and was RENAMED the International Committee on TAXONOMY of Viruses in 1977`
lefkowitz2018-virus-taxonomy-the-database-of-the
The ICTV was established in 1966 as the International Committee on Nomenclature of Viruses, and was renamed the International Committee on Taxonomy of Viruses in 1977
an everyday word doing unnoticed cultural work
scholz2023-veterinary-professional-identity
Furthermore, identity is also an everyday word that does significant, and usually unnoticed, cultural work.
not defined in this paper's own words; the beliefs people hold about themselves, which can shift with a behaviour
kwasnicka2016-behaviour-change-maintenance-theories
Such changes in identity positively enhance behaviour change maintenance
the ways in which people name, characterize, and understand themselves and one another within, and in relation to, the social world
scholz2023-veterinary-professional-identity
a process to divide an image or volume into non-overlapping separate parts or ‘segments’ to facilitate volumetric image processing and analysis [ 7 ]
clark2020-fetal-face-automatic-segmentation
the assignment of which pixels in an image belong to each individual cell
vanvalen2016-deep-learning-live-cell-imaging
not defined in this paper's own words; open-source image-analysis tool and QuPath library dependency
bankhead2017-qupath-open-source-digital-pathology
In recent years, a vibrant ecosystem of open source bioimage analysis software has developed. Led by ImageJ 3 , researchers in multiple disciplines can now choose from a selection of powerful tools, such as Fiji 4 , Icy 5 , and CellProfiler 6 , to perform their image analyses. These open source packages encourage users to engage in further development and sharing of customized analysis solutions i
not defined in this paper's own words; widely used open-source package centered on individual-image analysis
mcquin2018-cellprofiler-next-generation-image
The open-source biological image analysis software ecosystem is thriving [ 1 ]. ImageJ [ 2 ] was the first and is still the most widely used package for bioimage analysis; several other packages are based on its codebase (most notably, Fiji). ImageJ excels at the analysis of individual images, with a user interface analogous to Adobe Photoshop. Its major strength is its community of users and deve
involves behavioural matching in form, albeit not in time
bowshermurray2022-interpersonal-synchrony-autism
not defined in this paper's own words; proportional growth mechanism for novel topics
lorenz-spreen2019-accelerating-collective-attention
The dynamics of each topic i are governed by three basic mechanisms, proportional growth by imitation r p L i ( t ), self-inhibiting saturation \documentclass[12pt]{minimal} \usepackage{amsmath} \usepackage{wasysym} \usepackage{amsfonts} \usepackage{amssymb} \usepackage{amsbsy} \usepackage{mathrsfs} \usepackage{upgreek} \setlength{\oddsidemargin}{-69pt} \begin{document}$$\frac{{r_{c}}}{K}{\int}_{
a taken-for-granted background assumption of communication
seuren2021-turn-taking-video
Immediacy is a taken for granted background assumption of communication.
immediacy is the psychological distance between the communicators
oh2018-social-presence-systematic-review
immediacy was introduced by Mehrabian (1967) as behaviors communicating interpersonal closeness and approachability
xie2021-positive-teacher-communication-behaviors
not defined in this paper's own words; cellular responses constrained by checkpoint signaling
zhang2020-cancer-immunotherapy-tumor-infiltrating-immune-cells
CTLA-4 is a coinhibitory molecule expressed on T cells and functions to negatively regulate T-cell activation. 76 , 77 One pioneering study demonstrated that blocking CTLA-4 with antibodies could induce effective immune responses and lead to tumor regression, 78 opening the era of utilizing antibodies to release the brakes of immune cells to reinforce antitumor immune responses. 78 , 79 After clin
not defined in this paper's own words; host responses modulated by microbiota interactions
rinninella2019-what-is-the-healthy-gut-microbiota
demonstrated that gut microbiota composition is altered in patients suffering from T2D, but it is not clear whether these changes are a cause or simply a consequence of the disorder. Larsen et al. \ [92\] showed that the proportions of phyla Firmicutes and _Clostridia_ are significantly reduced in the T2D sufferers compared to the healthy group. Furthermore, the ratios of Bacteroidetes to Firmicut
not defined in this paper's own words; microbiota regulation of host immunity
rinninella2019-what-is-the-healthy-gut-microbiota
Each individual is provided with a unique gut microbiota profile that plays many specific functions in host nutrient metabolism, maintenance of structural integrity of the gut mucosal barrier, immunomodulation, and protection against pathogens. Gut microbiota are composed of different bacteria species taxonomically classified by genus, family, order, and phyla. Each human’s gut microbiota are shap
not defined in this paper's own words; one of the three essential macrophage functions named by the review
chen2023-macrophages-immunoregulation-therapeutics
Macrophages are crucial in innate immunity by regulating several homeostatic and evolutionary host defense immune responses. Besides, macrophages partake in many other biological events, including modulating reactive oxygen species (ROS) endogenous intensities, iron homeostasis, tissue injury repair, and numerous other metabolic functions. 5 , 6 In addition, macrophages have three essential functi
the age-related dysfunction of both innate and adaptive immunities
jarczak2022-cytokine-storm-definition
not defined in this paper's own words; age-associated decline in immune capacity
chen2023-macrophages-immunoregulation-therapeutics
The worldwide populace is aging, prompting an expanded future. Conversely, aging is related to falling apart health, an expanded danger of cancer, and diminished capacity of injury repair, putting massive weight on health foundations. Moreover, aging is linked to declining immune capacity. Therefore, the procedure is recognized as immunosenescence. Presentation to modified factors in an aging cell
not defined in this paper's own words; cancer treatment that mobilizes host immunity
zhang2020-cancer-immunotherapy-tumor-infiltrating-immune-cells
Immunotherapy has revolutionized cancer treatment and rejuvenated the field of tumor immunology. Several types of immunotherapy, including adoptive cell transfer (ACT) and immune checkpoint inhibitors (ICIs), have obtained durable clinical responses, but their efficacies vary, and only subsets of cancer patients can benefit from them. Immune infiltrates in the tumor microenvironment (TME) have bee
treatment aiming to boost natural defenses to eliminate malignant cells
zhang2020-cancer-immunotherapy-tumor-infiltrating-immune-cells
Immunotherapy, aiming to boost natural defenses to eliminate malignant cells, is a monumental breakthrough for cancer treatment and has revolutionized the field of oncology. Although the idea of unleashing the host immune system to eradicate cancer could trace back to a century ago, 18 , 19 significant advances have been achieved in recent basic and clinical investigations. Multiple cancer types h
a journal-level proxy metric used in researcher evaluation despite weak article-level validity
munafò2016-open-science-researchers-succeed
Unfortunately, academic institutions often rely on proxy metrics, like journal impact factor (IF), to quickly evaluate researchers’ work.
not defined in this paper's own words; journal-level proxy used to evaluate individual research
munafò2016-open-science-researchers-succeed
The IF is a flawed metric that correlates poorly with the scientific quality of individual articles ( Brembs et al., 2013 ; Neuberger and Counsell, 2002 ; PLOS Medicine Editors, 2006 ; Seglen, 1997 ).
`the degree to which . . . programs are implemented . . . as intended by the program developers` - quoted with two elisions, and `sometimes also termed `INTEGRITY``
carroll2007-a-conceptual-framework-for-impleme
Implementation fidelity is "the degree to which . . . programs are implemented . . . as intended by the program developers" [ 1 ]. This idea is sometimes also termed "integrity" [ 1 , 2 ].
not defined in this paper's own words; the degree to which an intervention is delivered as its designers intended
carroll2007-a-conceptual-framework-for-impleme
Despite being viewed as an element of implementation fidelity by the literature, programme differentiation actually measures something distinct from fidelity. It is concerned with determining those elements that are essential for its success. This exercise is an important part of any evaluation of new interventions. It enables discovery of those elements that make a difference to outcomes and whet
not defined in this paper's own words; dependent variables influenced by implementation determinants, or distinct results used to evaluate implementation
nilsen2015-implementation-theories-models-frameworks
Determinant frameworks describe general types (also referred to as classes or domains) of determinants that are hypothesized or have been found to influence implementation outcomes, e.g. health care professionals’ behaviour change or adherence to a clinical guideline. Each type of determinant typically comprises a number of individual barriers (hinders, impediments) and/or enablers (facilitators),
not defined in this paper's own words; desired endpoints affected by implementation processes
lewis2018-classification-causality-implementation-mechanisms
First, it is important to ensure that implementation strategies are appropriately specified. Some strategies in published compilations are well defined but may not be specified in terms of its core component that can have a reliable and measureable impact. Second, linkages between strategies and mechanisms need to be generated. Existing compilations do not offer mechanisms by which strategies act,
not defined in this paper's own words; reward structures that shape researcher choices and publication outcomes
munafo2017-manifesto-reproducible-science
Publication is the currency of academic science and increases the likelihood of employment, funding, promotion and tenure. However, not all research is equally publishable. Positive, novel and clean results are more likely to be published than negative results, replications and results with loose ends; as a consequence, researchers are incentivized to produce the former, even at the cost of accura
not defined in this paper's own words; rewards or penalties used to influence behavior
vlaev2019-financial-incentives-health-behavior
Incentives are central to economics and are used across the public and private sectors to influence behavior. Recent interest has been shown in using financial incentives to promote desirable health behaviors and discourage unhealthy ones.
not defined in this paper's own words; hashed InChI representation
david2020-molecular-representations-ai-drug-discovery-review
A hashed version of the InChI, the InChIKey, is used for open-web searching and library searching [ 58 ]. The first block of an InChIKey represents the molecular skeleton, and the second block encodes for isomerism. InChIKeys are designed to be unique representations of their corresponding parent InChI representations. However, an InChIKey can sometimes map to more than one InChI, the situation be
not defined in this paper's own words; hashed identifier paired with Standard InChI
bento2020-open-source-chemical-structure-curation
A standardised V2000 molfile was chosen as the primary chemical structure representation in the database. The Standard InChI and the corresponding hashed InChIKey [ 10 , 11 ] are used in ChEMBL as the measure of uniqueness for a chemical structure and are calculated from the molfile using software provided by the InChI Trust, currently version 1.05 [ 12 ]. Thus, when compounds from different scien
a desired goal that requires equality of opportunity and participation in the rudimentary and fundamental functions of society
baart2025-disability-definition-dilemma
entities in an interaction whose subsets also interact with each other
landry2024-simpliciality-higher-order-networks
In this paper, we introduce the concept of simpliciality to describe the extent to which a set of interactions satisfies the downward closure requirement.
not defined in this paper's own words in this sentence
oishi2022-money-happiness-income-inequality
Thus, in many Latin American countries, the decreased levels of income inequality might have reduced perceived competition, zero-sum thinking, and unfavorable upward social comparison, reducing the happiness gap between the rich and the poor.
not defined in this paper's own words; measured as the household Gini coefficient
buot2014-distal-sociological-determinants-hiv
Barnett and Whiteside postulate that income inequality decreases “social cohesion,” the fabric of society that stabilizes sexual relationships [17] .
not defined in this paper's own words; omitting low-mean genes from multiple-testing adjustment using an independently chosen filter
love2014-deseq2
DESeq2 uses the average expression strength of each gene, across all samples, as its filter criterion, and it omits all genes with mean normalized counts below a filtering threshold from multiple testing adjustment. DESeq2 by default will choose a threshold that maximizes the number of genes found at a user-specified target FDR
not defined in this paper's own words; pre-testing feature filter proposed for further optimization
mcmurdie2014-rarefying-microbiome-data-inadmissible
Although we did not explore the topic in the simulations here described, a procedure for further improving differential expression detection performance, called Independent Filtering [68] , also applies to microbial differential abundance. Some heuristics for filtering low-abundance OTUs are already described in the documentation of various microbiome analysis workflows [29] , [30] , and in many c
meaning the freedom to live one’s own life according to one’s own preferences, without excessive interference from others [ 56 , 57 ]
martinez-lopez2023-trust-organ-donation
not defined in this paper's own words; autonomy understood as the self-determination of a single, independent decision-maker
gomez-virseda2019-relational-autonomy-end-of-life
In many of the included publications, exploration of the concept of relational autonomy was more ‘a reaction against’ individual autonomy than a positive development of the concept itself.
how difficult it is to move or transport an object based on its natural attributes: weight, height, strength
hou2022-violence-against-nurses-emergency
refers to auto-correlations and implies
fried2016-mental-disorders-networks-review
not defined in this paper's own words; the auditory midbrain structure receiving the feedback; split in this paper into DCIC and CNIC
Blackwell2020-auditory-cortex-shapes-sound-responses-in-th
Title, "Role of feedback from auditory cortex in shaping responses to sounds in inferior colliculus" Title.
not defined in this paper's own words; the auditory midbrain structure studied
Ress2013-tonotopic-organization-in-the-depth-of-human
The inferior colliculus (IC) is the primary auditory midbrain structure that forms a major convergence zone within the auditory system, receiving obligatory bottom-up connections from the brainstem auditory structures, and direct corticofugal feedback connections from auditory cortex.
a chronic low-grade inflammatory profile
bautmans2022-vitality-capacity-definition
not defined in this paper's own words; low-grade chronic inflammation associated with age-related immune dysfunction
chen2023-macrophages-immunoregulation-therapeutics
The worldwide populace is aging, prompting an expanded future. Conversely, aging is related to falling apart health, an expanded danger of cancer, and diminished capacity of injury repair, putting massive weight on health foundations. Moreover, aging is linked to declining immune capacity. Therefore, the procedure is recognized as immunosenescence. Presentation to modified factors in an aging cell
abilities to recognize an information need and locate, evaluate, and use the needed information
danaher2020-internet-cognitive-enhancement
Traditional forms of enhancement inspire the first strategy. Empowering users for better information retrieval should be grounded in the augmentation of user capabilities so that they can gain a better understanding of the Internet as an informational resource. In the same vein as non-biological forms of enhancement, which proved successful in extending the cognitive capacities of individuals, inf
the ability to utilize information systems for data recording, transfer, retrieval, and clinical information management
li2026-artificial-intelligence-literacy-nursing
AI literacy intersects with concepts such as digital literacy and information literacy in the field of nursing and health education, but each has a different focus and connotative boundaries
a massive volume of information that a researcher may encounter during their analysis, making it difficult to identify key themes and patterns
rahimi2024-saturation-qualitative-research
not defined in this paper's own words; information abundance exceeding coping capacity
danaher2020-internet-cognitive-enhancement
The problem of information overload has received considerable attention from researchers concerned with the negative consequences of exposing individuals to too much information. 3 This phenomenon is about individuals’ diminished ability to understand all the information within rich informational environments and, consequently, to cope with them. Humans are averse to uncertainty (Shannon 1948 ); w
internet searches for crisis, symptom, product, policy, and credibility information
bento2020-information-seeking-local-covid-news
We find that people respond to the first report of COVID-19 in their state by immediately seeking information about COVID-19, as measured by searches for coronavirus, coronavirus symptoms, and hand sanitizer.
not defined in this paper's own words; a joint variable requiring BOTH having sought health information recently AND wanting to know more - high only if yes to both
figueiredo2020-mapping-global-trends-in-vaccine-c
A joint information-seeking behaviour variable is defined with responses “high” (if “yes” answered to both statements) and “low” (otherwise) Low Demographics and socioeconomic status Sex Male or female Female Age Integer-valued age, scaled to have a mean of 0 and unit SD No baseline Income quintile Quintiles: Q1 (lowest income) to Q5 (highest income) Q1 Religion: “Could you tell me what your relig
not defined in this paper's own words; many records repeating the same species-grid cell combinations
meyer2015-global-priorities-biodiversity-distributions
Currently, about 42 times that many (157 M) validated records represent only 21.6% (0.8 M) of these 3.7 M unique species-grid cell combinations, demonstrating a huge level of informational redundancy concentrated in a few places ( Fig. 4 , compare ref. 47 ).
not defined in this paper's own words; Sandelowski's name for data saturation - new data repeating what is already there, judged before and separately from analysis
saunders2017-saturation-qualitative-research-exploring-conceptualization
New data tend to be redundant of data already collected. In interviews, when the researcher begins to hear the same comments again and again, data saturation is being reached… It is then time to stop collecting information and to start analysing what has been collected.
antibiotics as part of the woodwork, taken for granted until rendered visible
chandler2019-antimicrobial-resistance-infrastructure
This leads to the proposal of antibiotics as infrastructure—part of the woodwork that we take for granted, and entangled with our ways of doing life, in particular modern life.
usable systems that disappear unless deliberately explicated
chandler2019-antimicrobial-resistance-infrastructure
not defined in this paper's own words; the effect SOM cells have on their targets
Yavorska2016-somatostatin-expressing-inhibitory-interneur
Electrical coupling of SOM cells likely has a substantial impact on the net effect of the SOM network, because SOM inhibition increases supralinearly when more than one SOM neuron is activated (Kapfer et al., 2007 ).
not defined in this paper's own words; what all three interneuron classes provide, and what the ISN assumption says prevents pathologic activity
Kumar2023-cell-type-specific-plasticity-of-inhibitory
The assumption that cortical inhibition is needed to prevent pathologic activity places the model in the inhibition-stabilized network (ISN) regime 46 , 53 , 60 , 62 .
not defined in this paper's own words; NK, granulocyte, and phagocyte populations
zhang2020-cancer-immunotherapy-tumor-infiltrating-immune-cells
Cancer is a disease of the genome, and it is characterized by a genomic instability in which numerous point mutations accumulate and structural alterations occur in the process of tumor progression. 1 , 2 Such genomic variations could give rise to tumor antigens, which could be recognized by the immune system as nonself and elicit cellular immune responses. 3 , 4 The immune system plays an essenti
not defined in this paper's own words; the immune-cell class in which the review places macrophages
chen2023-macrophages-immunoregulation-therapeutics
Macrophages are innate immune cells first identified by Elia Metchnikoff in starfish hatchlings in 1882 when tangerine tree thistles were used, then in Daphnia magna or essential water flea infested with fungal spores as the cells responsible for the cycle of phagocytosis of foreign materials. For this accomplishment, the Nobel Prize (Physiology and Medicine) was presented to Elia Metchnikoff in 1
Here the term 'instance' refers to what is particular in reality, to what are otherwise called 'tokens' or 'individuals' - entities (including processes) which exist in space and time and stand to each other in a variety of instance-level relations.
smith2005-relations-in-biomedical-ontologies
“Instance” is to indicate a single data element (e.g., lesion, tumor, or patient).
kocak2023-checklist-for-evaluation-of-radiomics-research-clear
racism within a particular type of institution
dean2022-structural-racism-definition-measurement
not defined in this paper's own words; named as a primary driver of health care inequity, against the reading that inequity comes from providers not knowing enough about other cultures
curtis2019-cultural-safety-rather-than-cultural
Eliminating Indigenous and ethnic health inequities requires addressing the social determinants of health inequities including institutional racism, in addition to ensuring a health care system that delivers appropriate and equitable care. There is growing recognition of the importance of cultural competency and cultural safety at both individual health practitioner and organisational levels to ac
not defined in this paper's own words; a theory identifying consciousness with a maximally irreducible cause-effect structure
cooke2021-what-is-consciousness-integrated-information
This inference rests on living systems being autopoietic systems that create themselves. As such, living systems are highly integrated. Integration here refers to the internal causal interactions of a system. For example, the feedforward circuitry of a digital camera where the activity of each photodiode is fully independent of the others shows no integration, while a recurrently connected neural
not defined in this paper's own words; axiomatic account linking consciousness to irreducible cause-effect structure
wahbeh2022-what-if-consciousness-is-not-an-emergent-pro
Integrated information theory is a mathematical approach based on phenomenology by first identifying the essential properties of consciousness, the so-called axioms: intrinsic information – each experience is specific, there is intrinsic information in the system that is associated with that experience that differs from alternative experiences, information – consciousness is composed of a specific
not defined in this paper's own words; axiomatic theory identifying consciousness with irreducible intrinsic causal structure
oizumi2014-iit-phenomenology-mechanisms-consciousness
Integrated information theory (IIT) is an attempt to characterize consciousness mathematically both in quantity and in quality [4] – [6] .
intersection of independent characters against divergence in any one of them - `We here dub these two frameworks`
padial2010-the-integrative-future-of-taxonomy
A close look at this literature reveals, however, a lack of consensus about what an integrative taxonomy should be. For example, Dayrat [ 36 ] proposes to broadly integrate molecular methods and approaches of population genetics at the expense of classical taxonomic procedures, while others hold just the opposite idea [ 37 , 38 ]. Also, major disagreements concern the degree of congruence that dif
not defined in this paper's own words; the stringent framework, as named in the trade-off sentence
padial2010-the-integrative-future-of-taxonomy
Both methods of integration have relevant limitations. The integration by cumulation approach may over-estimate the number of species by identifying distinct species where there is intraspecific character variation only. As an example, conspecific populations can be very distinct in terms of morphology but will be erroneously regarded as distinct species (alpha error or false positive). On the con
species limits at the INTERSECTION of two or more independent characters. Stringent; risks beta error, false negatives, and a bias toward old species
padial2010-the-integrative-future-of-taxonomy
Figure 1 Schematic representation of two approaches of integrative taxonomy . Background yellow, red, and blue colors represent the spectrum of character variation, each dot being an independent evolutionary linage that requires identification and delimitation as separate species. Integration by cumulation (left) identifies species limits with divergence in one or more not necessarily overlapping
not defined in this paper's own words; a review that brings together sources of diverse methods and compares them
byrne2020-person-centred-care-nursing-definition
To further facilitate the understanding [ 10 ] and theory development of the concept of PCC, this review adopted an integrative review methodology
provides a systematic approach to data examination
smith2020-rapid-implementation
involves the trustor’s perception that the trustee adheres to a set of principles that the trustor finds acceptable
stedham2019-mindfulness-trust-leadership
not defined in this paper's own words; the same idea under an older name
carroll2007-a-conceptual-framework-for-impleme
Implementation fidelity is "the degree to which . . . programs are implemented . . . as intended by the program developers" [ 1 ]. This idea is sometimes also termed "integrity" [ 1 , 2 ].
human-intelligence sense versus the algorithmic sense, where the most successful AI is brittle and bespoke rather than intelligent
can-computers-create-art
Compared to human intelligence, these algorithms are brittle and bespoke. For example, image recognition algorithms have undergone breathtaking breakthroughs in the past decade, and are now widely used in consumer products. Yet they often fail on inputs that suggest bizarre misunderstandings; the existence and robustness of adversarial examples (Szegedy et al. 2014) and procedurally-evolved images
redefined by Gardner as a new construct, not the general intelligence g
attwood2022-multiple-intelligences-semantics
Gardner (1983) essentially changed the meaning of the word intelligence in the way it was used in his book.
substrate-independent competence in navigating problem spaces, including indirect paths toward goals
levin2022-technological-approach-mind-everywhere
• Intelligence—the functional ability to solve problems in various spaces (not necessarily in 3D space), not tied to specific implementations, anatomical structures, or time scales. The degree of intelligence (IQ) is proportional to competency in navigating these spaces, including especially the ability to identify paths that temporarily lead further from the goal state but eventually enable bette
the defining attributes of a given concept which fill the concept with meaning
deppe2024-cognitive-warfare-concept
the number of attributes that the concept has
tang2023-what-is-esports
not defined in this paper's own words; the requirement that an artefact's features were intended by its creator
artefacts-essentialism-and-the-identification
Satisfying the modification condition alone does not transform an object into an artefact. A branch knocked down by heavy wind undergoes sufficient changes to meet the modification condition, but it is not considered an artefact because it was not intended by anyone to become a broken branch. Therefore, in addition to meeting the modification condition, an object must also fulfil the intention con
physical reading (intended physical properties) versus functional reading (intended function or meaning)
artefacts-essentialism-and-the-identification
The intention condition stipulates that for an object to be an artefact, it must be intended to be an artefact. But exactly what feature of the artefact must be intended? This question leads us to two different readings of the intention condition. On one reading, it is necessary for an artefact to have the same physical properties that its creators intended. On the other reading, it is necessary f
Intentionality involves performing an action with empathy and a desire for maximum benefit
monteiro2025-spiritual-awakening-concept
all conscious acts are experiences of something
popova2020-enactivism-ecological-psychology-agency
The core term of phenomenology is “intentionality,” understood as the claim that all acts of consciousness, be it perceptions, feelings, moods, decisions, memories, or imaginations, are experiences of something.
orientation toward a specified end that calls for actions of a specified kind
bertolini2022-robots-ai-legal-subjects
In turn, intentionality is often defined as “the determination of a specified end that implies the necessity of actions of a specified kind” ( Gutman et al., 2012 ).
the broad reading most interest theories adopt, where an interest holder can be made better or worse off
stucki2020-legal-animal-rights
However, most interest theories opt for a broader understanding of interests in the sense of ‘being in someone’s interest’, meaning that an interest holder can be ‘made better or worse off’ and is able to benefit in some way from protective action.
the overall aim that motivated the processing
becker2024-gdpr-purpose-definition
topic-focused consumption across multiple sources
bakshy2020-selective-exposure-facebook-news-diet
Exposure by interest : low selective exposure to pages and high selective exposure to topics. Users in the region of interest are not affiliated with pages but browse different sources while consuming the content they are interested in.
not defined in this paper's own words; inhibitory cells that REPRESENT ABOUT 20-30% OF ALL CORTICAL CELLS
Yavorska2016-somatostatin-expressing-inhibitory-interneur
Lastly, high levels of interconnectivity in cortical circuits make it challenging to study the effects of only a single interneuron subtype.
not defined in this paper's own words; the cell that also precesses, inherited or coordinating
Drieu2019-hippocampal-sequences-during-exploration-mec
Theta oscillations dominate the hippocampal LFP and powerfully shape both pyramidal cell and interneuron firing.
not defined in this paper's own words; what VIP labels in cortex - and not what it labels here
Goyernd-a-novel-class-of-inferior-colliculus-princip
where sparse neurons matching descriptions of VIP-expressing interneurons were labeled
compromise occurs between different persons who participate in a decision-making process
spang2023-compromise-political-theory
not defined in this paper's own words; between-person level of mechanism operation
lewis2018-classification-causality-implementation-mechanisms
Once specified, an implementation strategy needs to be linked to the mechanisms hypothesized to underlie its functioning. Mechanisms explain how an implementation strategy has an effect by describing the actions that lead from the administration of the strategy to the implementation outcomes (see Table 1 for definitions). Statistically speaking, mechanisms are always mediators, but mediators may n
aims to create an awareness regarding how groups of people and individuals are affected by their social position in different systems and structures of power
brunig2024-intersectionality-bioethics-review
seldom applied to research with transgender populations
wesp2019-intersectionality-transgender-health
Yet, although intersectionality has been applied to health research, 17 , 24–27 seldom has it informed research with transgender populations.
not defined in this paper's own words in this sentence
martinez2024-intervention-reduce-causal-illusions
In the present study conducted with high school students, we observed a robust and long-lasting effect of the intervention on the reduction of the causal illusion.
not defined in this paper's own words; what the grades actually rank: none, pharmacological, procedure without general anaesthesia, procedure under general anaesthesia, ICU
katayama2016-extended-clavien-dindo-classificat
Any deviation from the normal postoperative course without the need for pharmacological treatment or surgical, endoscopic, or radiological interventions. Allowed therapeutic regimens include drugs such as antiemetics, antipyretics, analgesics, diuretics, electrolytes, and physiotherapy. This grade also includes wound infections opened at the bedside Requirement for pharmacological treatment with d
intimacy refers to the feeling of connectedness that communicators feel during an interaction
oh2018-social-presence-systematic-review
not defined in this paper's own words; measured here as conversational intimacy, a subscale of a relational communication scale
roos2023-feeling-heard-concept
First, in the “non-positive” subsample, when both constructs were simultaneously included in a multiple regression, feeling heard was still strongly predictive of negative avoidance intentions ( β = -.49) while intimacy was not ( β = .02). In contrast, in the “positive” subsample, both constructs maintained predictive value: β = -.35 for feeling heard and β = -.26 for intimacy. Thus, whereas conve
not defined in this paper's own words; spatial and temporal variation within a tumor
lao2017-deep-learning-radiomics-glioblastoma
The poor prognosis is mainly due to the spatial and temporal intra-tumor heterogeneity.
not defined in this paper's own words; variation of tumor characteristics within one tumor
parmar2015-machine-learning-radiomic-biomarkers
Textural features, derived from the gray level co-occurrence (GLCM) 21 and run length matrices (GLRLM) 22 , quantified the intra-tumor heterogeneity.
not defined in this paper's own words
clark2020-fetal-face-automatic-segmentation
Intraclass correlation coefficient (ICC) using repeated measures ANOVA was calculated to compare the total segmentation volumes of each operator.
not defined in this paper's own words; a statistic of how alike repeated measurements of the same child are
rich2013-accelerometer-minimum-wear-time
The reliability of accelerometer-determined mean daily counts per minute (cpm) was calculated using the Spearman-Brown prophecy formula [30] , [31] based on the intraclass correlation coefficient (ICC) as a measure of reliability.
compromise occurs within a person’s head
spang2023-compromise-political-theory
not defined in this paper's own words; within-person level of mechanism operation
lewis2018-classification-causality-implementation-mechanisms
Once specified, an implementation strategy needs to be linked to the mechanisms hypothesized to underlie its functioning. Mechanisms explain how an implementation strategy has an effect by describing the actions that lead from the administration of the strategy to the implementation outcomes (see Table 1 for definitions). Statistically speaking, mechanisms are always mediators, but mediators may n
not defined in this paper's own words; a person's own regulatory resources that, with the environment, set functional ability
huang2024-socially-supported-sleep-older-adults
The interaction between an individual’s environment and intrinsic capacity, which encompasses emotional, physiological, and behavioral regulatory capabilities, determines their functional ability
the composite of all the physical and mental capacities that an individual can draw on
bautmans2022-vitality-capacity-definition
not defined in this paper's own words; causal differences made within a system from its own perspective
oizumi2014-iit-phenomenology-mechanisms-consciousness
In IIT, information is meant to capture the “differences that make a difference” from the perspective of the system itself – and is therefore both causal and intrinsic.
the product of causal informativeness and selectivity for a specific state
albantakis2023-integrated-information-theory-4-consciousness
Intrinsic information ii ( s , s ¯ ) measures the causal power of a system S over itself, for its current state s , over a specific cause or effect state s ¯ . Intrinsic information depends on interventional conditional probabilities and unconstrained probabilities of cause or effect states and is the product of selectivity and informativeness.
as the faculty being ASSISTED: a hypothesis the mathematician brings, which the model then confirms or fails to confirm
Davies2021-advancing-mathematics-by-guiding-human-intui
In the supervised learning stage, the mathematician proposes a hypothesis that there exists a relationship between X ( z ) and Y ( z ). By
as the faculty being TESTED: the framework as a bench on which a hunch can be checked cheaply before it is pursued
Davies2021-advancing-mathematics-by-guiding-human-intui
Conceptually, this framework provides a ‘test bed for intuition’—quickly verifying whether an intuition about the relationship between two quantities may be worth pursuing and, if so, guidance as to how they may be related.
not defined in this paper's own words; the mathematician's sense of which relationships are worth pursuing, treated here as the thing to be guided rather than replaced
Davies2021-advancing-mathematics-by-guiding-human-intui
A mathematician’s intuition plays an enormously important role in mathematical discovery—“It is only with a combination of both rigorous formalism and good intuition that one can tackle complex mathematical problems” 25 .
here a mathematical quantity, the system's mean invasion fitness Q
gjini2023-invasion-resistance-multispecies-communities
By the same arguments, Q ( z ) is also a quantity that explicitly embodies the invasion resistance of the system towards outsiders.
not defined in this paper's own words in this sentence; embodied by the quantity Q
gjini2023-invasion-resistance-multispecies-communities
The extreme of μ → 0 can be obtained for increased facilitation between resident species (higher values of k ), which typically would lead to higher invasion resistance of the system.
input overlap coefficient
diem2024-firm-production-networks-predictability
share of total inputs two firms buy from the same industries
diem2024-firm-production-networks-predictability
IOC i j specifies the fraction of total inputs, i and j buy from the same industries.
Besides temperature, precipitation equilibria can be also influenced by other parameters such as pH and ionic strength (a parameter that considers the sum of the concentrations of all the ionic compounds in solution and their charge).
sambo2019-hydroponic-solutions-for-soilless-production-systems-issues
not defined in this paper's own words; the salt concentration of the PEDOT:PSS solution, raised with ionic liquid
feig2018-conductive-interpenetrating-network-hydrogels
The gel strength, given by storage modulus ( G ’), increases with increasing ionic strength b .
not defined in this paper's own words; load on the side that counts
Hahn2021-working-memory-capacity-of-crows-and-monkeys
Parallel to the behavioral results and in line with the results from monkeys, we found a strong effect of ipsilateral load on the information maintenance, as there was a sharp drop in information when the load increased from one item to two items ( Figure 4A , blue and yellow curves). The addition of a third item only slightly decreased the maintained information further ( Figure 4A , red curve).
not defined in this paper's own words; the same side
Kohl2022-neural-mechanisms-underlying-human-auditory
In early AEF research, it was found that when simple sounds were presented monaurally, responses in the hemisphere contralateral to the sound presentation were more pronounced than responses in the ipsilateral hemisphere
Implementation Research
eslava-schmalbach2019-equity-implementation-research
intron retention
sammeth2008-alternative-splicing-nomenclature
implementation science
eslava-schmalbach2019-equity-implementation-research, waltz2015-concept-mapping-implementation
interpersonal synchrony
bowshermurray2022-interpersonal-synchrony-autism
not defined in this paper's own words; being cut off from other people
al-hamad2025-ambiguous-loss-aging-migrants
Group therapies have been effective in validating experiences and fostering shared understanding, reducing isolation, and building resilience [ 21 , 22 ].
not defined in this paper's own words; “one psychological state of alienation”
liang2022-social-isolation-cancer-concept
According to Seeman (1959) , alienation encompasses powerlessness, isolation, normlessness, self-estrangement, and meaninglessness. Thus, isolation is only one psychological state of alienation.
not defined in this paper's own words; calorimetry separating the enthalpic and entropic parts of binding
chang2017-coacervates-sequence-entropy-control
We use isothermal titration calorimetry (ITC) as a tool to experimentally probe the thermodynamics of complex coacervation (Fig. 3a ) 48 .
not defined in this paper's own words; the calorimetric method used to measure compound-14 binding thermodynamics
bhardwaj2017-in-situ-click-chemistry-cox2-inhibitors
The thermodynamic-binding signatures calculated from isothermal titration calorimetry (ITC) confirmed that binding of click chemistry building block 5-azido-pyrazole ( 14 ) to COX-2 involves a favorable change in free energy (ΔG = −36.20 kJ mol −1 ), which was mainly based on H-bonding and van der Waals interactions.
dynamic bias produced as algorithmic selection, human response, retraining, and renewed selection recur
vicente2020-bias-human-machine-interaction
In statistics, bias refers to the systematic distortion of a statistic. Here we can distinguish a biased sample, which means a sample that is incorrectly assumed to be a random sample of a population, and estimator bias, which results from an estimator whose expectation differs from the true value of the parameter [ 81 ]. Within our scope, bias is closer to the sample bias and estimator bias from
not defined in this paper's own words; bias generated by repeated human-model dependency
vicente2020-bias-human-machine-interaction
Evolution of bias between algorithm and human. In sub-figure (a), biased data from a human may lead to a biased algorithm, this is pre-algorithmic bias. In sub-figure (b), a biased algorithmic output might affect human behavior: For instance, by hiding certain items from humans, algorithms may affect human discovery, learning, and awareness in the long term. Sub-figure (c) indicates a continuous i
Learning requires that knowledge generation is an iterative process in which a child uses what he or she knows to generate new hypotheses, tests those hypotheses using minds-on thinking, and updates his or her understanding based on those tests.
zosh2018-accessing-the-inaccessible-redefining-play-as-a
not defined in this paper's own words; protocol modification during a review in response to the included evidence
moher2009-prisma
The conduct of a systematic review depends heavily on the scope and quality of included studies: thus systematic reviewers may need to modify their original review protocol during its conduct. Any systematic review reporting guideline should recommend that such changes can be reported and explained without suggesting that they are inappropriate. The PRISMA Statement (Items 5, 11, 16, and 23) ackno
not defined in this paper's own words; another, which UNDERESTIMATED it
Spivak2022-deconvolution-improves-the-detection-and-qua
3d ), and the jitter and median predictors underestimated the rSTG (jitter: 0.023, 58%; median filtering: 0.028, 70%).
not defined in this paper's own words; the perturbation that separated precession from sequences
Drieu2019-hippocampal-sequences-during-exploration-mec
Several studies have challenged the idea that phase precession could entirely account for theta sequences, by showing that a moderate addition of time jitter to experimental spike trains resulted in preservation of phase precession but a reduced prevalence of theta sequences (Dragoi and Buzsáki, 2006 ; Foster and Wilson, 2007 ; Itskov et al., 2008 ). This suggested that theta sequences required pr
not defined in this paper's own words; an interactive scripting platform integrated with Galaxy
afgan2018-galaxy-platform-accessible-reproducible-collaborative
Galaxy's UI makes it possible for anyone to run complex analyses. However, a complete analysis of genomic data often requires custom scripts or visualizations, especially at the beginning (data preparation) or end (data summarization) of analyses. To meet these customized needs, we recently introduced Galaxy Interactive Environments ( 26 ), an integration of Galaxy with Jupyter (RStudio is in deve
not defined in this paper's own words; interactive scientific-Python environment
harris2020-array-programming-numpy
SciPy and Matplotlib are tightly coupled with NumPy in terms of history, development and use. SciPy provides fundamental algorithms for scientific computing, including mathematical, scientific and engineering routines. Matplotlib generates publication-ready figures and visualizations. The combination of NumPy, SciPy and Matplotlib, together with an advanced interactive environment such as IPython
not defined in this paper's own words; fair treatment of people in how outcomes are shared and how they are dealt with
karikumpu2024-trust-in-leader-healthcare
Justice was identified to be a related concept of trust [ 52 ] as it is also part of the core of a healthy organization [ 59 ].
not defined in this paper's own words; equitable distribution of benefits and burdens across populations
lysaght2019-ai-assisted-decision-making-healthcare
Adhering to considerations of justice by recognising that AI-assisted CDSS may replicate social biases and prejudices that can bring about discriminatory harms and ensuring that the benefits and burdens of these systems are distributed equitably across the population, developers must be aware of any existing biases in the training data sets that have been used. Where there are risks of the AI syst
short exact matching substrings of fixed length k
menzel2016-kaiju-taxonomic-classification
To achieve high speed, these algorithms do not use traditional local alignment methods, but rely on the identification of k -mers, short exact matching substrings of fixed-length k , in order to compare two nucleotide sequences.
not defined in this paper's own words; short genomic substrings used by Kraken 1
wood2019-improved-metagenomic-analysis-kraken-2
Assigning taxonomic labels to sequencing reads is an important part of many computational genomics pipelines for metagenomics projects. Recent years have seen several approaches to accomplish this task in a time-efficient manner [ 1 – 3 ]. One such tool, Kraken [ 4 ], uses a memory-intensive algorithm that associates short genomic substrings ( k -mers) with the lowest common ancestor (LCA) taxa. K
not defined in this paper's own words; protein-focused translated-search comparator
wood2019-improved-metagenomic-analysis-kraken-2
We found that Kraken 2 exhibited similar, and often superior, per-sequence accuracy to the other nucleotide classifiers and that Kraken 2X provided similar (though slightly lower) accuracy compared to Kaiju (Fig. 2 b, Additional file 1 : Table S1). The nucleotide-based classifiers exhibited lower accuracy on the viral read data than did the translated search classifiers, demonstrating the advantag
the novel metagenome classifier Kaiju, which finds maximum (in-)exact matches on the protein-level using the Burrows–Wheeler transform
menzel2016-kaiju-taxonomic-classification
not defined in this paper's own words; chance-corrected categorical agreement metric
venter2016-global-terrestrial-human-footprint-maps
Two statistics were used to determine Human Footprint performance, root mean squared error (RMSE) 53 and the Cohen kappa statistic of agreement 54 . The RMSE is a dimensioned (expresses average error in the units of variable of interest) error metric for numerical predictions, and tends to heavily punish large errors. The Kappa statistic expresses the agreement between two categorical datasets cor
not defined in this paper's own words; an agreement statistic between the map and the validation data
venter2016-global-human-footprint-biodiversity
The Kappa statistic 23 was 0.737, also indicating good agreement between the human footprint and the validation data set.
having a disproportionally large effect on its natural environment relative to its abundance
brussow2020-gut-dysbiosis-concept
not defined in this paper's own words; functionally consequential members distinguished from network hubs
berg2020-microbiome-definition-re-visited-o
The field of microbiome research has evolved rapidly over the past few decades and has become a topic of great scientific and public interest. As a result of this rapid growth in interest covering different fields, we are lacking a clear commonly agreed definition of the term “microbiome.” Moreover, a consensus on best practices in microbiome research is missing. Recently, a panel of international
Kellgren-Lawrence
tiulpin2018-knee-osteoarthritis-deep-learning
Kullback–Leibler
boldini2024-stigmergy-mathematical-modelling-control
K -Nearest Neighbor
leao2022-npomix-machine-learning-mass-spectrometry
k-nearest-neighbor
wang2021-scgnn-graph-neural-network-single-cell
not defined in this paper's own words; proximal product of learning-oriented training
lewis2018-classification-causality-implementation-mechanisms
In recent years, there has been growing recognition of the importance of implementing evidence-based practices as a way to improve the quality of health care and public health. However, the results of implementation efforts have been mixed. About two-thirds of efforts fail to achieve the intended change ( 2 ), and nearly half have no effect on outcomes of interest ( 3 ). Implementation strategies
not defined in this paper's own words; the understandable information patients need before they can take part
larsson2023-feeling-safe-perioperatively
The primary antecedents that need to be fulfilled before patients feel safe in a perioperative context are Knowledge and Relationship
that advances measurement functions is an infinite-dimensional linear operator
lusch2018-deep-learning-for-universal-linear-embeddings
The Koopman operator is a leading data-driven embedding, and its eigenfunctions provide intrinsic coordinates that globally linearize the dynamics.
the operator giving a global linearization of the dynamics
lusch2018-deep-learning-for-universal-linear-embeddings
The Koopman operator provides a global linearization of the dynamics.
an extremely memory-efficient metagenomics classification tool
wood2019-improved-metagenomic-analysis-kraken-2
not defined in this paper's own words; memory-efficient minimizer-based metagenomic sequence classifier
wood2019-improved-metagenomic-analysis-kraken-2
Although Kraken’s k -mer-based approach provides a fast taxonomic classification of metagenomic sequence data, its large memory requirements can be limiting for some applications. Kraken 2 improves upon Kraken 1 by reducing memory usage by 85%, allowing greater amounts of reference genomic data to be used, while maintaining high accuracy and increasing speed fivefold. Kraken 2 also introduces a tr
in continuous pursuit, the vector from cursor to target taken as the intended direction for supervised learning
forenzo2024-deep-learning-bci-continuous-tracking
First, the labeling system assumes that the subject is always trying to move in the optimal direction toward the target.
not defined in this paper's own words; a contextual cue naming the purported creator that shapes evaluation
humans-versus-ai-whether-and-why-we-prefer-human
Although the process of appraising artworks undoubtedly involves a subjective element, consistent preferential patterns have nevertheless emerged across peoples’ aesthetic judgements of such artworks (e.g., blue is the most preferred color, whereas yellow is most disliked [Bornstein, 1975 ; Komar & Melamid, 1999 ; Palmer et al., 2013 ]; and representational art is enjoyed over abstract art [Heinri
not defined in this paper's own words; facts being kept from the people who need them
hugelius2025-trust-nursing-crisis-leadership
A lack of transparency regarding facts, as well as the leader not acting in accordance with their declared intentions, resulted in mistrust.
not defined in this paper's own words; opacity in how a machine-learning recommendation is produced
lysaght2019-ai-assisted-decision-making-healthcare
This lack of transparency is referred to as the ‘black box’ of AI.
a singular event in which an individual deviates from their desired goal
kwasnicka2016-behaviour-change-maintenance-theories
the recipient foregoes an opportunity to talk
seuren2021-turn-taking-video
not defined in this paper's own words; lexical subset connected independently on every layer
stella2018-multiplex-mental-lexicon-learning
As already discussed, investigating navigation on linguistic networks has proved insightful 5 , 13 , 17 . Hence we focus on analysing the navigability of our multiplex network 39 , identifying word clusters that are fully navigable on every layer, i.e. where any word can be reached from any other word on every layer when considered in isolation. An example is reported in Fig. 1 for a representativ
the single nontrivial viable cluster in the modeled lexicon
stella2018-multiplex-mental-lexicon-learning
Our multiplex model contains a single non-trivial (i.e. with more than two nodes) viable cluster composed of 1173 words, about 13.8% of the network size. In the following we refer to this cluster as the largest viable cluster (LVC). For easier reference, we indicate words in the empirical LVC as “LVC-in words” and words outside of the empirical LVC as “LVC-out words”. Reshuffling network links whi
Late fusion combines the classification decisions from the two modalities.
sa2016-deepfruits-a-fruit-detection-system-using-deep
Late fusion, which is also called decision level fusion, represents that the final result is voted by the results generated by several classifiers.
shu2018-a-review-of-emotion-recognition-using-physiological
THE ONLY POSITION DEFINED BY WHAT THE PARENT DOES RATHER THAN BELIEVES: `Concerns about vaccination result in this group choosing to delay or select only some recommended vaccines`. And it is porous - `With a specific vaccine scare hesitant parents may SELECT-OUT the vaccine and move to this category`
leask2012-communicating-with-parents-about-v
Late or selective vaccinator 2–27% Concerns about vaccination result in this group choosing to delay or select only some recommended vaccines [ 38 ]. This group most closely correspond with Gust’s ‘worried’ category with significant doubts about the safety and some doubt about the necessity of vaccines
not defined in this paper's own words; 2-27% - parents who delay or select only some recommended vaccines
leask2012-communicating-with-parents-about-v
Five distinct parental groups were identified: the ‘unquestioning acceptor’ (30–40%), the ‘cautious acceptor’ (25–35%); the ‘hesitant’ (20–30%); the ‘late or selective vaccinator’ (2–27%); and the ‘refuser’ of all vaccines (<2%).
Response latency was determined from PSTH as the time point when the activity exceeded the average baseline (measured in the time window of 900–1000 ms after stimulus onset) by three standard deviations of baseline fluctuations. Response threshold was the minimum stimulus intensity that could induce a sound-evoked spike in a neuron.
Xiao2018-septal-and-hippocampal-neurons-contribute-to
the technology-generated transmission delay between when a participant produces an action and when the co-participant(s) perceive that action
seuren2021-turn-taking-video
not defined in this paper's own words; unobserved constructs inferred through measures
lewis2018-classification-causality-implementation-mechanisms
Implementation scientists have isolated eight outcomes as the desired endpoints of implementation efforts: acceptability, feasibility, appropriateness, adoption, penetration, fidelity, cost, and sustainability ( 1 ). Many of these outcomes are appropriately construed as latent variables, but others are manifest/observable in nature ( 30 ); a recent systematic review offers measures of these outcom
the parameters learned by the model that capture correlated and common patterns between the datasets
kibble2020-integrative-machine-learning-obesity-twins
not defined in this paper's own words in this sentence
wang2024-scaling-laws-lattice-distortions
We demonstrate that lattice distortion significantly enhances the stability of solid solution alloys
not defined in this paper's own words; strain of the crystal lattice from mismatched atoms
li2020-high-entropy-alloy-nanocatalyst-electron-transfer
The atomic size of each component is different, which can cause lattice distortion 18 .
Life cycle analysis
chemat2012-green-extraction-natural-products
not defined in this paper's own words; lowest-common-ancestor computation enabled by internal taxonomy numbering
wood2019-improved-metagenomic-analysis-kraken-2
Kraken 2’s use of this internal taxonomy representation allows for the easier computation of the LCA of two nodes because the ID numbers themselves give information as to their relative depths in the tree, while the National Center for Biotechnology Information (NCBI) taxonomy IDs lack this property. The internal taxonomy representation also allows Kraken 2 to use the minimal number of bits for st
A DEFINING FEATURE OF THE LCIC IS THE PRESENCE OF NEUROCHEMICAL MODULES, WHICH HAVE BEEN SHOWN IN MANY SPECIES
Wong2019-tonotopic-and-non-auditory-organization-of-t
not defined in this paper's own words; the lateral cortex; here THE LATEROCAUDAL AREA WITH HIGH FREQUENCIES, and A DEFINING FEATURE OF THE LCIC IS THE PRESENCE OF NEUROCHEMICAL MODULES
Wong2019-tonotopic-and-non-auditory-organization-of-t
The IC is usually divided into three main regions: the central nucleus (CNIC), the lateral cortex (LCIC), and the dorsal cortex (DCIC; Oliver, 2005 ).
not defined in this paper's own words; pre-existing local-accuracy metric used in protein-structure prediction
varadi2021-alphafold-protein-structure-database
lDDT is a pre-existing metric used in the protein structure prediction field. A key motivation behind lDDT is to assess the local accuracy of a prediction, awarding a high score for regions that are well-predicted even if the entire prediction cannot be aligned well to the true structure. This is particularly important for evaluating multi-domain predictions where the individual domains may be lar
not defined in this paper's own words; local distance difference test accuracy
abramson2024-alphafold3
We measure the quality of the predictions with DockQ, LDDT or pocket-aligned r.m.s.d. For nucleic–protein interfaces, we measure interface accuracy through iLDDT, which is calculated from distances between atoms across different chains in the interface. DockQ and iLDDT are highly correlated (Extended Data Fig. 9 ), so the standard cut-offs for DockQ can be translated to equivalent iLDDT cut-offs.
not defined in this paper's own words; in this context a cluster of behaviours, roles and qualities, as the analysis groups them
laukka2022-leadership-digital-health
The defining attributes associated with leadership in the study context were identified and categorized as behaviours, roles and qualities (Figure 3 ).
not fixed but developing over time and across contexts, now transformed by digitalization
laukka2022-leadership-digital-health
As leadership, also nursing leadership develops over time and in different contexts. During the past decade, the rapid digitalization of health care has transformed nursing leadership.
three dictionary senses: characteristics of a good leader, the position of leader, the people in charge
laukka2022-leadership-digital-health
Leadership then again is defined as ‘the set of characteristics that make a good leader’, ‘the position or fact of being the leader’ and ‘the person or people in charge of an organization’.
not defined in this paper's own words; the surroundings students learn in, measured here with the DREEM
hugo-van-dyk2023-transfer-climate-education
When compared to the elements in the learning environment as described through the DREEM questionnaire, all elements of the learning environment are included in the transfer climate except for the ‘training programmes’ which is unique to the transfer climate
physical and cultural context designed for a target audience and objective
desutter2017-embodied-spatial-thinking-stem
These learning environments, which are physical and cultural contexts engineered with the express purpose of facilitating the attainment of target learning objectives by a specific audience, vary vastly in their design principles.
the total sum of counts across all genes and spike-in transcripts
lun2016-a-step-by-step-workflow-for-low
The library size is defined as the total sum of counts across all features, i.e., genes and spike-in transcripts.
both the column sum and number of reads per sample
mcmurdie2014-rarefying-microbiome-data-inadmissible
All tests were corrected for multiple inferences using the Benjamini-Hochberg method to control the False Discovery Rate [52] . Please note that in the context of these simulations library size is altogether different from effect size ; the former being equivalent to both the column sums and the number of reads per sample. The library sizes for both categories of simulation were randomly sampled f
not defined in this paper's own words; total sequencing reads observed for a sample
mcmurdie2014-rarefying-microbiome-data-inadmissible
Modern, massively parallel DNA sequencing technologies have changed the scope and technique of investigations across many fields of biology [1] , [2] . In gene expression studies the standard measurement technique has shifted away from microarray hybridization to direct sequencing of cDNA, a technique often referred to as RNA-Seq [3] . Analogously, culture independent [4] microbiome research has m
Leaky integrate-and-fire
mazzoni2015-local-field-potential-integrate-and-fire
leaky integrate and fire
henkes2024-spiking-neural-networks-regression
positive feedback to a post or video
bessi2016-user-polarization-facebook-youtube
We start our analysis by focusing on the statistical signatures of content consumption on Facebook and Youtube videos. The focus is on all videos posted by conspiracy-like and scientific pages on Facebook. We compare the consumption patterns of the same video on both Facebook and Youtube. On Facebook a like stands for a positive feedback to the post; a share expresses the will to increase the visi
a signal of another user's approval that functions as a social reward
lindstrom2021-reward-learning-social-media-engagement
In online social media platforms, feedback on one’s behavior often comes in the form of a “like”—a signal of approval from another user regarding one’s post 2 —which is assumed to function as a social reward. Indeed, several lines of research support the idea that “likes” engage similar motivational mechanisms as other, more basic, types of rewards such as food or money. In humans, brain imaging s
not defined in this paper's own words; fit of a topology and model to sequence data
price2010-fasttree-approximately-maximum-likelihood-trees
In the maximum-likelihood (ML) approach, evolution is explicitly modeled with a transition rate matrix, and the tree that best explains the data – the tree with the highest likelihood – is the best tree [5] . The ML criterion ranks the trees but does not specify how to find a good topology. Because ML phylogenetic inference is NP complete [6] , no practical method can guarantee that it will find t
not defined in this paper's own words; the probability of the observed data under a model
sunnaker2013-approximate-bayesian-computation
their method was not yet exactly identical to what is now known as ABC, as it aimed at approximating the likelihood rather than the posterior distribution.
Note further that the posterior probability and the likelihood ratio can be expressed as functions of each other and the prior probability of pathogenicity.
pejaver2022-calibration-of-computational-tools-for-missense-variant
not defined in this paper's own words; one of the asymptotic chi-squared component tests that can be summed across the two conditionally independent parts
finak2015-mast-a-flexible-statistical-framew
Because Z g and Y g are defined conditionally independent for each gene, tests with asymptotic χ 2 null distributions, such as the likelihood ratio or Wald tests, can be summed and remain asymptotically χ 2 , with the degrees of freedom of the component tests added.
not defined in this paper's own words; a surface-level rating of how much a viewer likes an image
humans-versus-ai-whether-and-why-we-prefer-human
Importantly, each image was presented in random order and had individual-level randomization of a label of “human-created” or “AI-created.” In other words, different labels were assigned to different images across participants. Thus, on average, participants were presented 15 images with an AI label, and 15 images with a human label, even though all images were in fact AI-created. 1 Participants w
a personal, idiosyncratic-preference sense that is nonetheless associated with social reputation
social-reputation-influences-on-liking
Liking art, although often perceived as more personal or idiosyncratic, is also associated with social reputation [ 9 , 20 , 21 ]. In sociological surveys, spending time viewing art or choosing to visit a museum is often argued to be driven by desires to join or distinguish oneself from certain social groups (e.g., [ 9 , 15 ]). Affiliation with the arts has been connected to higher education, stat
not defined in this paper's own words; personal preference for an artwork, tied to its formal appearance and artistic/aesthetic appeal
social-reputation-influences-on-liking
Personal preference or liking, is often associated more with formal appearance or the skill of an artist [ 8 , 10 , 18 – 22 ]. Setting aside most individuals’ lack of purchasing resources to buy a top-line artwork, we may enjoy art while walking through a museum but do not want to own it [ 23 , 24 ]. Alternatively, we may love pieces purchased at a flea market or poster copies of famous artworks,
not defined in this paper's own words; integrated R/Bioconductor expression-analysis package
ritchie2015-limma-differential-expression
limma is an R/Bioconductor software package that provides an integrated solution for analysing data from gene expression experiments. It contains rich features for handling complex experimental designs and for information borrowing to overcome the problem of small sample sizes. Over the past decade, limma has been a popular choice for gene discovery through differential expression analyses of micr
not defined in this paper's own words; the package whose lmFit method models differential expression
gentleman2004-bioconductor-open-software-development
Next we find genes which are differentially expressed between the ALL1/AF4 and BCR/ABL groups. We use the function lmFit from the limma package, which can assess differential expression between many different groups and conditions simultaneously. The function lmFit accepts a model matrix which describes the experimental design and produces an output object of class MArrayLM which stores the fitted
linear models containing fixed and random effects
harrison2018-mixed-effects-modelling-ecology
Linear mixed effects models and generalized linear mixed effects models (GLMMs), have increased in popularity in the last decade ( Zuur et al., 2009 ; Bolker et al., 2009 ). Both extend traditional linear models to include a combination of fixed and random effects as predictor variables. The introduction of random effects affords several non-exclusive benefits. First, biological datasets are often
not defined in this paper's own words; models combining fixed and random effects
harrison2018-mixed-effects-modelling-ecology
The use of linear mixed effects models (LMMs) is increasingly common in the analysis of biological data. Whilst LMMs offer a flexible approach to modelling a broad range of data types, ecological data are often complex and require complex model structures, and the fitting and interpretation of such models is not always straightforward. The ability to achieve robust biological inference requires th
not defined in this paper's own words in this sentence
gall2017-meerkat-vocal-hot-spot-cohesion
we fitted three linear mixed effects models (LMMs) [ 18 ] with the gap size, the length and the width of the group as responses
assumes that there exists a single, most likely order of mutations
cheng2012-temporal-order-pathway-alterations
not defined in this paper's own words; row-wise model for expression features
ritchie2015-limma-differential-expression
limma integrates a number of statistical principles in a way that is effective for large-scale expression studies. It operates on a matrix of expression values, where each row represents a gene, or some other genomic feature relevant to the current study, and each column corresponds to an RNA sample. On the one hand, it fits a linear model to each row of data and takes advantage of the flexibility
not defined in this paper's own words; analysis relating functional and binding assay results
roltgen2020-defining-the-features-and-duration
A volume of 400 μL of EDTA-anticoagulated plasma was extracted by Qiagen EZ1 Virus Mini Kit v2.0 (Qiagen Germantown, MD). Molecular testing for the presence of SARS-CoV-2 RNA in plasma was performed with a modification of a published rRT-PCR assay targeting the envelope ( E ) gene ( 46 , 47 ). The standard Ct values of positive tests with this assay range from Ct <20 to 45 cycles. Testing of plasm
not defined in this paper's own words; trend model used to estimate and project yield change
ray2013-yield-trends-global-crop-production
We linearly regressed 20 years of crop yields at each of the political units to determine the average linear rates of yield improvement over the observed period. Many previous studies have shown that crop yields change linearly and have used linear regression to project future crop yields [24] – [30] . Here we calculate the non-compounding linear percentage rate by solving a in Equation 1 ; Y is t
a text analysis program that captures various themes and psychological states from text using prevalidated dictionaries
ashokkumar2022-group-identity-natural-language
dictionary-based percentages for semantic and psychological categories
jackson2021-text-thought-language-psychological-science
LIWC uses word frequency to yield insight into the meaning of language.
not defined in this paper's own words; the meaning of a term in a public language, fixed by the dominant causal source across the community
koch2020-engineering-what
According to this suggestion, the linguistic meaning of a term t—where t is the lexicalization of a concept C—is not necessarily identical to the concept expressed by a speaker.Footnote 16 This is because public languages are constrained by social factors—how the word is generally used in one’s linguistic community, how the experts use the term, etc. This feature is captured in the notion of domin
the extension of a term in a public language is the kind whose tokens constitute the dominant causal source of the mental states that dispose speakers of that language to use the term
koch2020-engineering-what
The extension of a term t in a public language L is the kind whose tokens constitute the dominant causal source of those mental states that dispose speakers of L to use t.
The linguistic principle evaluates if terminology is context appropriate and consistently used
hannon2022-perinatal-resilience-concept
evaluates the consistency of use and meaning of a concept within the literature
smith2022-parental-sleep-sick-child
not defined in this paper's own words; glycolipid molecules on the surface of certain bacteria that trigger strong immune responses
jarczak2022-cytokine-storm-definition
Lipopolysaccharides (LPS, endotoxin) are one of the most important virulence factors of Gram-negative bacteria and have an extraordinarily high pathogenicity to humans.
not defined in this paper's own words; pro-inflammatory molecules produced by Proteobacteria
rinninella2019-what-is-the-healthy-gut-microbiota
Animal studies constitute the majority of causative evidence linking changes in microbial composition to obesity while, in humans, data are more variable. In addition, although the majority of mouse gut species are unique, the mouse and human microbiota are similar at the division level, with Firmicutes and Bacteroidetes dominating \ [83\]. The analysis \ [83\] of gut microbiota of genetically obe
obtained by dividing the total number of live animal outcomes (such as adoptions and transfers) by the total number of live animal intakes
horecka2022-animal-sheltering-research
the standard shelter outcome measure, never without controversy
horecka2022-animal-sheltering-research
This measure has never been without controversy and is limited, in part, by the wide variance in the various ways in which animal shelters operate in their community and what their priority services are ( 108 ).
a conscious state personally lived through in the first person
popova2020-enactivism-ecological-psychology-agency
Husserl understands experience or lived experience (a translation of the German verb Erleben and noun Erlebnis ) as “something that one lives through,” “the conscious state as personally lived through and experienced in the first person” ( Moran and Cohen, 2012 , pp. 115, 195).
a first-person, qualitative phenomenon
waldfuhrmann2021-classical-concert-listening
not defined in this paper's own words; guideline designed for continued development from reader feedback
moher2009-prisma
Like any evidence-based endeavor, PRISMA is a living document. To this end we invite readers to comment on the revised version, particularly the new checklist and flow diagram, through the PRISMA Web site. We will use such information to inform PRISMA's continued development
not defined in this paper's own words; guideline updated through community feedback
benchimol2015-record-routinely-collected-health-data
As the availability of routinely collected health data expands, we expect more involvement of researchers from regions in which such data are not currently accessible. Through the record-statement.org website and message board, we expect ongoing commentary and discussion on the RECORD document from interested parties, which may result in official revisions in the future. Through this online commun
Linguistic Inquiry and Word Count
ashokkumar2022-group-identity-natural-language
a text analysis program that captures various themes and psychological states from text using prevalidated dictionaries
ashokkumar2022-group-identity-natural-language
not defined in this paper's own words; multilingual dictionary for extracting psycholinguistic word categories
su2020-covid-lockdown-weibo-twitter-psycholinguistic
Existing studies have widely used the Language Inquiry and Word Count (LIWC) and confirmed it as a valid tool for psychometric analysis [ 22 ]. The LIWC dictionary has multiple versions of different languages, including English [ 23 ], French [ 24 ], Italian [ 25 ], and Dutch [ 26 ]. The LIWC dictionary includes many word categories of linguistic features that are related to mental processes and h
linear mixed effects models
gall2017-meerkat-vocal-hot-spot-cohesion
not defined in this paper's own words; abbreviation for linear mixed effects models
harrison2018-mixed-effects-modelling-ecology
The use of linear mixed effects models (LMMs) is increasingly common in the analysis of biological data. Whilst LMMs offer a flexible approach to modelling a broad range of data types, ecological data are often complex and require complex model structures, and the fitting and interpretation of such models is not always straightforward. The ability to achieve robust biological inference requires th
the systematic study of Aristotelian diagrams
frijters-demey2023-modal-logic-aristotelian-diagrams
the systematic study of Aristotelian diagrams as objects of independent interest
frijters-demey2023-modal-logic-aristotelian-diagrams
The notion of Aristotelian isomorphism, which was first introduced in [24,28], is of crucial importance in logical geometry, because it allows us to start studying Aristotelian diagrams as objects of independent interest. More concretely, Aristotelian isomorphisms enable us to make abstraction of the specific formulas and logical system that define a given Aristotelian diagram, and thus, to say th
The logical principle examines the theoretical integration of the concept in question with associated concepts
hannon2022-perinatal-resilience-concept
considers the theoretical integration of the concept with other related concepts
smith2022-parental-sleep-sick-child
refers to the mechanism for integrating certain concepts into theory but remaining distinct from other relevant theoretical concepts
guraya2024-professionalism-digital-context
not defined in this paper's own words; the standardized aqueous-solubility unit used by AqSolDB
sorkun2019-aqsoldb-aqueous-solubility-descriptors
Unit Conversion: The chosen unit of solubility in this dataset is LogS, where S is the aqueous solubility in mol/L (or M).
not defined in this paper's own words; per-tool records of analysis results
ewels2016-multiqc-analysis-results
Most bioinformatics programs produce logs detailing their results. Dedicated QC tools such as FastQC ( http://www.bioinformatics.babraham.ac.uk/projects/fastqc ), Qualimap ( Okonechnikov et al. , 2015 ) and RSeQC ( Wang et al. , 2012 ) are excellent at highlighting potential problems in data. However, nearly all of these logs and reports are produced on a per-sample basis, requiring the user to fi
not defined in this paper's own words; a standardized dictionary to which MIMIC laboratory tests were mapped
johnson2016-mimic-iii-critical-care-database
Several projects are ongoing to map concepts within the MIMIC database to standardized dictionaries. For example, researchers at the National Library of Medicine National Institutes of Health have mapped laboratory tests and medications in MIMIC-II to LOINC and RxNorm, respectively 4 . Efforts are also underway to transform MIMIC to common data models, such as the Observational Medical Outcomes Pa
not defined in this paper's own words; clinical terminology for laboratory orders and results
kohler2020-the-human-phenotype-ontology-in-2021
LOINC (Logical Observations Identifiers, Names, Codes) is a clinical terminology for laboratory test orders and results that is widely used in EHRs ( 55 ). We developed a mapping strategy (LOINC2HPO) to transform laboratory data in EHR records to HPO terms. For instance, if the result of the test LOINC:6298-4 ( potassium in blood ) is above normal limits, our library would call the HPO term Hyperk
a general term used for people who have recovered from COVID-19 but still exhibit symptoms for far longer than would be expected
fernandez-de-las-penas2021-post-covid-symptoms-definition
not defined in this paper's own words; lasting disability after SARS-CoV-2 infection
ferrari2024-global-burden-371-diseases
There were 2·28 billion (95% UI 2·18–2·37) incident cases of COVID-19 globally in 2021, equivalent to an age-standardised incidence rate of 28 955·3 (27 708·3–30 143·2) per 100 000 population ( appendix 2 tables S7, S10 ). This was an increase from 1·63 billion (1·55–1·69) incident cases of COVID-19 globally in 2020, equivalent to an age-standardised incidence rate of 20 819·8 (19 908·0–21 681·5)
not defined in this paper's own words; continuing preservation of digital assets
wilkinson2016-fair-guiding-principles-data-stewardship
Good data management is not a goal in itself, but rather is the key conduit leading to knowledge discovery and innovation, and to subsequent data and knowledge integration and reuse by the community after the data publication process. Unfortunately, the existing digital ecosystem surrounding scholarly data publication prevents us from extracting maximum benefit from our research investments (e.g.,
not defined in this paper's own words; the international name for social care provision
pryor2026-adult-social-care-nursing-concept
Internationally, this provision is referred to as ‘long term care’ ( National Institute on Aging, 2023 ), however the term ‘social care’ is becoming more commonplace, for example in Australia, Canada and Ireland
not defined in this paper's own words; ongoing help for older adults who can no longer manage daily living alone
jang2020-staff-family-partnership-long-term-care
The number of older adults who require long-term care (LTC) has increased rapidly with the increase in the ageing population.
leave-one-out cross-validation
melo2023-deep-learning-ecg-brugada
not defined in this paper's own words; abbreviation for leave-one-data-set-out cross-validation
horvath2013-dna-methylation-age-human-tissues
The second approach, referred to as leave-one-data-set-out cross-validation (LOOCV) analysis, leads to unbiased estimates of the predictive accuracy for each data set. As suggested by its name, this approach estimates the DNAm age for each data set (considered as test data set) separately by fitting a separate multi-tissue age predictor to the remaining (left out) data sets. The resulting unbiased
not defined in this paper's own words; greater response to losses than equivalent gains
vlaev2019-financial-incentives-health-behavior
If we are going to use incentive schemes to influence health behaviors, then it is important that we give them the best chance of working. Behavioral economics integrates insights from psychology with the laws of economics and provides a number of robust psychological phenomena that help to better explain human behavior. Individuals’ decisions in relation to incentives may be shaped by more subtle
stronger response to a loss than to an equivalent gain
vlaev2019-financial-incentives-health-behavior
It has been demonstrated that we react more to losses than to gains of equivalent magnitude [ 38 ], which is embedded into the well-known (Nobel prize winning) Prospect Theory of risky choice. Loss aversion implies that someone who loses £10 from his or her pocket will lose more satisfaction than another person would gain satisfaction from a £10 windfall. Most incentive schemes tend to offer rewar
not defined in this paper's own words; consequence of pooling's size reduction
voulodimos2018-deep-learning-for-computer-vision
Pooling layers are in charge of reducing the spatial dimensions (width × height) of the input volume for the next convolutional layer. The pooling layer does not affect the depth dimension of the volume. The operation performed by this layer is also called subsampling or downsampling, as the reduction of size leads to a simultaneous loss of information. However, such a loss is beneficial for the n
not defined in this paper's own words; information discarded by equal-depth subsampling
mcmurdie2013-phyloseq-microbiome-analysis
In multivariate analyses such as PCA, large differences in variances between columns are corrected by standardizing each column; i.e. dividing each column by its standard deviation. Thus each column will have the same weight in the multivariate analysis. For OTU abundance tables, such a procedure is inappropriate as the disparities in column sums can be 100-fold. Methods based on chi-squared dista
not defined in this paper's own words; the lowest empty electron level of the dye
antaris2017-nir-ii-molecule-protein-fluorophore
Molecular engineering of the energy difference between the highest occupied molecular orbital (HOMO) and lowest unoccupied molecular orbital (LUMO) levels allows wavelength tuning of emission peaks spanning the NIR-II.
not defined in this paper's own words; the lowest-energy empty orbital
kaji2015-purely-organic-electroluminescent-material
The theoretical background ( Supplementary Note 1 ) reveals that small Δ E ST is achieved by separating highest occupied molecular orbital (HOMO) and lowest unoccupied molecular orbital (LUMO) distributions.
defined as <3,000 to 4,500 metabolic equivalent minutes per week
roth2020-global-burden-cardiovascular-diseases
laminar population analysis
mazzoni2015-local-field-potential-integrate-and-fire
LSTM is a special type of RNN capable of learning long-term dependencies.
ko2018-a-brief-review-of-facial-emotion-recognition
long short-term memory
liu2019-deepmod-nanopore-dna-modifications
The proinflammatory phenotype formed under the influence of LPS and/or IFN- γ
malyshev2015-macrophage-plasticity-concept
primary motor cortex
michaels2016-neural-population-dynamical-system
not defined in this paper's own words; conventional pattern-recognition algorithms for PUF decoding
liu2019-quantum-dot-anticounterfeiting-labels
the first layer of security can be easily authenticated with naked eyes, while the second layer of security is able to be authenticated with AI technique rather than time-consuming machine learning algorithms
not defined in this paper's own words; models learning observation-output relationships
mcnutt2021-gnina-molecular-docking-deep-learning
Machine learning (ML) represents another growing class of scoring functions [ 8 ]. ML algorithms learn arbitrary relationships between observations and outputs while classical scoring functions assume a specific functional form [ 14 ]. There has been considerable progress in other biomedical fields with the utilization of ML models [ 15 ]. However, machine learning algorithms require a large amoun
not defined in this paper's own words; tested R algorithms adapted to computational biology
gentleman2004-bioconductor-open-software-development
Among the statistical and numerical algorithms provided by R are its random number generators and machine learning algorithms. These have been well tested and are known to be reliable. The Bioconductor Project has been able to adapt these to the requirements in CBB with minimal effort. It is also worth noting that a number of innovations and extensions based on work of researchers involved in the
not defined in this paper's own words; data-driven solubility models for which AqSolDB supplies inputs
sorkun2019-aqsoldb-aqueous-solubility-descriptors
The availability of the calculated 2D descriptors makes it possible to directly use the data for developing machine learning models.
not defined in this paper's own words; data-trained predictive models
coley2019-graph-convolutional-chemical-reactivity
Machine learning models are well-suited to aggregate massive amounts of prior knowledge and apply them to new molecules, whereas most humans may only be able to recall the most common reaction types and general reactivity trends.
aspects of financing services, legal and political aspects, education of professionals
mohler2015-credeci-2-guideline
legislation, policy, payment, regulation and accreditation of healthcare
scholl2014-patient-centeredness-concept
not defined in this paper's own words; innate immune cells whose core functions include immunomodulation, phagocytosis, and antigen presentation
chen2023-macrophages-immunoregulation-therapeutics
Macrophages are innate immune cells first identified by Elia Metchnikoff in starfish hatchlings in 1882 when tangerine tree thistles were used, then in Daphnia magna or essential water flea infested with fungal spores as the cells responsible for the cycle of phagocytosis of foreign materials. For this accomplishment, the Nobel Prize (Physiology and Medicine) was presented to Elia Metchnikoff in 1
not defined in this paper's own words; phagocytic regulators of tumor immunity
zhang2020-cancer-immunotherapy-tumor-infiltrating-immune-cells
Macrophages are phagocytic cells, comprising a heterogeneous population with complex phenotypic and functional properties in the TME. Macrophages can eliminate malignant cells through phagocytosis or through producing soluble factors to induce tumor cell apoptosis. 169 In addition to the direct tumor-killing capability, macrophages play important roles in modulating tumor progression through mecha
not defined in this paper's own words; a RE-AIM dimension indexed by long-term effectiveness and setting-level sustainability
glasgow2019-re-aim-planning-evaluation-framework
All RE-AIM dimensions are complex, but implementation currently has the most indices. It focuses on fidelity to an intervention: the extent to which the program is implemented consistently across different settings, staff, and patients. It also includes adaptations made ( 58 ) and costs from multiple stakeholder perspectives ( 59 ). Maintenance has indices at the individual- (long-term effectivene
the self-care tasks that occur when the patient incorporates the treatment into their lifestyle
laranjeira2023-therapeutic-adherence-mental-disorders
not defined in this paper's own words; large, diverse reference-genome test species
elshire2011-genotyping-by-sequencing-high-diversity-species
Advances in next generation technologies have driven the costs of DNA sequencing down to the point that genotyping-by-sequencing (GBS) is now feasible for high diversity, large genome species. Here, we report a procedure for constructing GBS libraries based on reducing genome complexity with restriction enzymes (REs). This approach is simple, quick, extremely specific, highly reproducible, and may
not defined in this paper's own words; one of the four crops analyzed globally
ray2013-yield-trends-global-crop-production
Using ∼2.5 million agricultural statistics, collected for ∼13,500 political units across the world, we track four key global crops—maize, rice, wheat, and soybean—that currently produce nearly two-thirds of global agricultural calories
Specifically, the remarkable interest on maize (also known as corn) can be attributed to the fact that it is cultivated in many parts across the globe as well as its versatile usage (for example, direct consumption by humans, animal feed, producing ethanol, and other biofuels).
benos2021-machine-learning-in-agriculture-a-comprehensive-updated
not defined in this paper's own words; human correction of prioritized structure problems
bento2020-open-source-chemical-structure-curation
All the components of the structure pipeline have been made freely available for other researchers to use and adapt for their own use. The code is available in a GitHub repository and it can also be accessed via the ChEMBL Beaker webservices. It has been used successfully to standardise the nearly 2 million compounds in the ChEMBL database and the compound validity checker has been used to identif
not defined in this paper's own words; human recovery of missing provenance links
sorokina2021-coconut-open-natural-products
The particularity of NPs, opposed to synthetic molecules, which constitute the biggest part of chemical databases, resides in their production by living organisms. Therefore, in addition to their structure and computable structural properties, NPs need to be annotated with at least one literature reference, mentioning where, when and from which organism the NP was isolated. As a direct consequence
as illustration: a picture accompanying an argument, which the project rejects
periegesis2023-mapping-antiquity
using maps as visual portals into narratives, as a means to interrogate rather than merely illustrate spatial information
mean annual precipitation
jing2015-ecosystem-multifunctionality-biodiversity-climate
not defined in this paper's own words; abbreviation for mean average precision
pereira2022-sleap-multi-animal-pose-tracking
We use the mean average precision (mAP) metric from the human pose-estimation literature to summarize performance while taking into account animal size, visibility of body parts and uncertainty in human-labeling precision 17 . We implement this calculation with the assumption that all animal landmarks are as ‘easy’ to label as the most unambiguous human landmark (the eye). This provides a lower bo
average of the absolute percentage errors of predictions
sujeeun2020-nanofibrous-scaffold-performance
mean absolute percentage error
sujeeun2020-nanofibrous-scaffold-performance
Masking encompasses the aspects of camouflaging that focus on hiding one’s ASC characteristics and developing different personas or characters to use during social situations.
hull2017-social-camouflaging-autism
not defined in this paper's own words; the standard technique this paper is arguing with: it makes a prime invisible by making it WEAKER, which is exactly why the comparison it enables is not clean
Van-den-Bussche2013-disentangling-conscious-and-unconscious-proc
In traditional masking paradigms, unconscious primes typically have a lower signal strength than conscious primes, confounding the comparison between conscious and unconscious processing. As an alternative approach, we categorized trials with identical stimulus strength as either conscious, uncertain, or unconscious based on the trial-by-trial prime awareness assessment
metal-isotope antibody measurement of many proteins in individual cells
zhang2020-cancer-immunotherapy-tumor-infiltrating-immune-cells
Single-cell protein analysis is a pivotal approach to understanding the phenotypic heterogeneity of TILs. Mass cytometry, or cytometry by time-of-flight (CyTOF), utilizing metal-isotope-labeled antibodies in combination with finely tuned mass spectrometry-based detection, enables simultaneous quantification of more than 40 proteins from millions of individual cells at low cost. 175 By contrast, sc
not defined in this paper's own words; single-cell protein quantification with isotope labels
zhang2020-cancer-immunotherapy-tumor-infiltrating-immune-cells
Immunotherapy has revolutionized cancer treatment and rejuvenated the field of tumor immunology. Several types of immunotherapy, including adoptive cell transfer (ACT) and immune checkpoint inhibitors (ICIs), have obtained durable clinical responses, but their efficacies vary, and only subsets of cancer patients can benefit from them. Immune infiltrates in the tumor microenvironment (TME) have bee
free digital learning resources offered through the SWAYAM portal
dhawan2020-online-learning-a-panacea-in-the-t
SWAYAM portal is an interesting educational program that is initiated by the government of India to achieve three important objectives of our educational policy, that is, access, equity, and quality. The main objective of SWAYAM is to provide online learning and reduce the digital divide. It provides a large number of free courses for school, distance, graduate, and postgraduate education. During
not defined in this paper's own words; affordable courses that many platforms provide to students; one form of digital learning resource
dhawan2020-online-learning-a-panacea-in-the-t
Reliability and sufficient availability of Information Communication Technology infrastructure, learning tools, digital learning resources in the form of Massive Open Online Courses, e-books, e-notes, and so on are of utmost importance in such severe situations ( Huang et al., 2020 ).
an approach to cognitive life enacted where brain, body, and culture conflate
malafouris2018-mind-material-engagement
Material Engagement Theory suggests a way of looking at, and sets out a possible pathway to approach this middle in-between space where brain, body and culture conflate (Malafouris 2004 , 2013 ). Grounded in the anthropological archaeology of the mind (Malafouris 2004 ; Malafouris and Renfrew 2008 , 2010 ; Renfrew 2004 ; Renfrew et al. 2008 ; Iliopoulos and Malafouris 2014 ), the material engageme
not defined in this paper's own words; constitutive continuity of mind and matter
malafouris2021-mark-making-human-becoming
Trying to highlight those problems and attempting to overcome them, I will suggest a different approach to the study of mark making and its relation to thinking based on the concept of enactive signification. My approach is rooted in cognitive archaeology which can be described as the field of research that specializes in studying the cognitive ecology of human becoming (past and present). In part
not defined in this paper's own words; runtime static-image plotting fallback
ewels2016-multiqc-analysis-results
Reports with hundreds of samples become too large for use with HighCharts; instead MultiQC switches to rendering plots as images at run-time using the Python plotting library MatPlotLib ( Hunter, 2007) . Images are embedded within the HTML, maintaining a stand-alone file with consistent file size. These static reports are also suitable for conversion to PDF using tools such as Pandoc ( http://pand
not defined in this paper's own words; scientific visualization library coupled to NumPy
harris2020-array-programming-numpy
SciPy and Matplotlib are tightly coupled with NumPy in terms of history, development and use. SciPy provides fundamental algorithms for scientific computing, including mathematical, scientific and engineering routines. Matplotlib generates publication-ready figures and visualizations. The combination of NumPy, SciPy and Matplotlib, together with an advanced interactive environment such as IPython
the conceptual structure of a complex at a local maximum of integrated information
oizumi2014-iit-phenomenology-mechanisms-consciousness
MICS (maximally irreducible conceptual structure): The conceptual structure generated by a complex in a state that corresponds to a local maximum of integrated conceptual information Φ Max (synonymous with “quale” or “constellation” in “qualia space”).
not defined in this paper's own words; the aspect of integrated information IIT equates with consciousness
cooke2021-what-is-consciousness-integrated-information
In IIT, consciousness is held to be equivalent to a specific aspect of the integrated information associated with a system, the Maximally Irreducible Conceptual Structure (MICS) [ 16 ].
not defined in this paper's own words; the likelihood-based estimation framework for phylogenies
tamura2021-mega11
The Molecular Evolutionary Genetics Analysis (MEGA) software has continuously grown to meet the need for sophisticated evolutionary analysis to discover organismal and genome evolutionary patterns and processes. It was first released in 1993 to offer the statistical methods of molecular evolution through an interactive interface on the Microsoft Disk Operating System (MS-DOS) ( Kumar et al. 1993 )
ranking trees by how well an explicit evolutionary model explains the observed sequences
price2010-fasttree-approximately-maximum-likelihood-trees
In the maximum-likelihood (ML) approach, evolution is explicitly modeled with a transition rate matrix, and the tree that best explains the data – the tree with the highest likelihood – is the best tree [5] . The ML criterion ranks the trees but does not specify how to find a good topology. Because ML phylogenetic inference is NP complete [6] , no practical method can guarantee that it will find t
Misophonia Consensus Committee
swedo2022-misophonia-consensus-definition
captures how well a given classifier performs on each of the classes and hence is robust to data imbalance
newaz2020-network-protein-structural-classification
Multidrug resistant
gajdacs2019-ideal-antibiotic-concept
multi-drug-resistant
wingfield2014-catastrophic-costs-definition
not defined in this paper's own words
cunningham2019-automated-posture-estimation-cerebral-palsy
The mean absolute error (MAE) was minimized through online learning
not defined in this paper's own words; station-level validation error metric
abatzoglou2018-terraclimate-high-resolution-global-dataset
Data from TerraClimate were extracted at grid cells co-located with individual stations. We calculated linear validation statistics of Pearsons’ correlation coefficients, mean absolute error (MAE), and bias for each station. We constrained our validation to calendar year summaries rather than individual months to avoid artificially inflating the correlation by incorporating the seasonal cycle. To
not defined in this paper's own words; the average squared distance a particle moves in a time lag
maggi2017-active-bath-fluctuation-dissipation
To characterize the dynamics of the microbead in absence of external perturbation we measure the mean squared displacement (MSD) along the y axis
not defined in this paper's own words; the average squared distance travelled over time
mort2016-pigmentation-patterns-mathematical-model
We examined the population spread of melanoblasts in our E14.5 time-lapse sequences and calculated its mean squared displacement (MSD).
not defined in this paper's own words in this sentence
leao2022-npomix-machine-learning-mass-spectrometry
The Jaccard index is a measurement between the number of features (similarities, biosynthetic classes, and substructure predictions) that are present or absent while comparing two fingerprints (one BGC and one MS/MS fingerprint).
not defined in this paper's own words; pipeline stage quantifying identified objects
carpenter2006-cellprofiler
Most image analysis projects, even for new cell types or assays, can be accomplished simply by pointing and clicking using CellProfiler's graphical user interface (Figure 1a ). The software uses the concept of a 'pipeline' of individual modules (Figure 1b ; Additional data file 2). Each module processes the images in some manner, and the modules are placed in sequential order to create a pipeline:
not defined in this paper's own words; alternative name for measurement invariance
boateng2018-best-practices-developing-validating-scales
Another method to test dimensionality is measurement invariance, also referred to as factorial invariance or measurement equivalence ( 107 ). Measurement invariance concerns the extent to which the psychometric properties of the observed indicators are transportable (generalizable) across groups or over time ( 108 ). These properties include the hypothesized factor structure, regression slopes, in
not defined in this paper's own words; the property tested by multi-group confirmatory factor analysis, and the one the paper says the competing instruments had not established
bruder2013-measuring-individual-differences-i
Analyses based on a cross-cultural sample (Study 1a; N = 7,766) supported the conceptualization of conspiracy mentality as a one-dimensional construct across the three language versions of the CMQ that is stable across time (Study 1b; N = 141). Multi-group confirmatory factor analysis demonstrated cross-cultural measurement equivalence of the CMQ items.
not defined in this paper's own words; error caused by misunderstanding or poor measurement
boateng2018-best-practices-developing-validating-scales
Pre-testing helps to ensure that items are meaningful to the target population before the survey is actually administered, i.e., it minimizes misunderstanding and subsequent measurement error. Because pre-testing eliminates poorly worded items and facilitates revision of phrasing to be maximally understood, it also serves to reduce the cognitive burden on research participants. Finally, pre-testin
not defined in this paper's own words; why adjustment cannot finish the job
davies2018-reading-mendelian-randomisation-st
Many epidemiological methods attempt to correct for, or minimise, observed differences in confounders between study participants. These methods can give useful evidence about causal relations if we measure enough confounders so that, after adjustment or matching, study participants who consume different amounts of alcohol are otherwise comparable. But this assumption is unverifiable; if it does no
severe mechanical mismatch between the two material types
feig2018-conductive-interpenetrating-network-hydrogels
not defined in this paper's own words; a difference in stiffness between device and tissue
tan2022-conductive-polymer-composites-soft-electronics
Such significant mechanical mismatch and weak interfacial adhesion strength may increase the noise and decrease the sensitivity of physiological signals, or even cause the failure of devices.
not defined in this paper's own words; a treatment duration calculated by seeded repository code
johnson2016-mimic-iii-critical-care-database
The repository has been seeded with code to calculate commonly utilized variables in critical care research, including severity of illness scores, comorbidity scores, and duration of various treatments such as mechanical ventilation and vasopressor use. We encourage users to incorporate this code into their research, provide improvements, and add new contributions that have potential to benefit th
not defined in this paper's own words; respiratory support received by many ICU patients
roltgen2020-defining-the-features-and-duration
A total of 254 individuals with a positive SARS-CoV-2 real-time RT-PCR (rRT-PCR) nasopharyngeal swab test were included in the study (fig. S1). Study subjects were identified either after routine serology testing or occupational health screening in the Stanford Health Care Clinical Laboratories for anti-SARS-CoV-2 RBD IgM and IgG antibodies (136 asymptomatic individuals or outpatients), or after t
not defined in this paper's own words; biological action inferred from measured phenotypic profiles
carpenter2006-cellprofiler
Second, human-scored image analysis is qualitative, usually categorizing samples as 'hits' (where normal physiology is grossly disturbed) or 'non-hits'. By contrast, automated analysis rapidly produces consistent, quantitative measures for every image. In addition to uncovering subtle samples of interest that would otherwise be missed, systems-level conclusions can be drawn directly from the quant
the BROAD account, which the paper says validation should require instead. TWO NEAR-SYNONYMS SEPARATED, WITH A REGULATORY CONSEQUENCE ATTACHED TO THE SPLIT
yakhin2017-biostimulants-in-plant-science-a-g
Given the difficulty in determining a “mode of action” for a biostimulant, and recognizing the need for the market in biostimulants to attain legitimacy, we suggest that the focus of biostimulant research and validation should be upon proof of efficacy and safety and the determination of a broad mechanism of action, without a requirement for the determination of a specific mode of action.
the specific biochemical interaction through which a drug substance acts on the body to generate its curative effect
dalkin2015-realist-mechanism-concept
a combination of resources offered by the social programme under study and stakeholders’ reasoning in response
dalkin2015-realist-mechanism-concept
not defined in this paper's own words; processes or events through which strategies affect outcomes
lewis2018-classification-causality-implementation-mechanisms
First, it is important to ensure that implementation strategies are appropriately specified. Some strategies in published compilations are well defined but may not be specified in terms of its core component that can have a reliable and measureable impact. Second, linkages between strategies and mechanisms need to be generated. Existing compilations do not offer mechanisms by which strategies act,
processes or events through which an implementation strategy operates to effect desired implementation outcomes
lewis2018-classification-causality-implementation-mechanisms
not defined in this paper's own words; volume of print and television news devoted to H1N1
kereselidze2016-pandemic-media-attention-risk-perception
To investigate media attention between 1 st April 2009 and 31 rd March 2010 (1 st March 2009 to 28 th February 2010 for the UK), the volume of news reporting in selected print-media and TV newscasts was measured in the five countries. For DE, ES and CZ, two opinion-leading newspapers, a national evening newscast, and a weekly news magazine were selected (see Table 1 for the full media set). Media
the number of influenza news reports published in a given period
kereselidze2016-pandemic-media-attention-risk-perception
In all researched countries media attention, defined as the number of published news reports on influenza A H 1 N 1 , was highest in week 18 [ Table 2 ], when the WHO declared pandemic phase 4 and shortly thereafter, pandemic phase 5. Media attention rapidly waned in all countries and was followed only by smaller peaks in news coverage over the remaining course of the pandemic Figs 1 – 5 . Media a
coverage organized by novelty and news value rather than disease incidence
kereselidze2016-pandemic-media-attention-risk-perception
Previous research has shown that influenza rates sometimes converge with (social) media patterns, but often times do not [ 5 – 7 ]. This lack of convergence may be explained by the fact that media logic does not equate epidemiological logic; for example, the first casualty in an epidemic has higher news value than later casualties, and influenza cases occurring close by have higher news value than
not defined in this paper's own words; event- and news-value-driven allocation of coverage
kereselidze2016-pandemic-media-attention-risk-perception
The combined analysis of the elements described above, confirms that media logic does not equate to epidemiological logic, which adds to prior—yet mixed—findings that influenza rates oftentimes diverge from (social) media patterns (e.g., Mollema et al., 2015; Fenichel et al., 2013; Signorini et al. 2011) [ 5 – 7 ]. In the case of the 2009 influenza A H 1 N 1 , media attention did not increase with
a notion the paper judges to lack theoretical rigor and consistency
vanyoro2019-medical-xenophobia-counter-narratives
In this regard, the notion of medical xenophobia exhibits a lack of theoretical rigor and consistency
not defined in this paper's own words; the paper reports scholars' definitions and argues the notion lacks theoretical rigor
vanyoro2019-medical-xenophobia-counter-narratives
It is this article’s argument that medical xenophobia does not adequately capture the full extent of complexity, ambivalence and range of possible experiences of non-nationals in South Africa’s public health care system.
not defined in this paper's own words; software used to assemble NGS reads into genomes
zhou2020-a-pneumonia-outbreak-associated-wi
A local nucleic acid database for human and mammals was used to filter reads of host genomes before mapping reads to the virus database. The results of the metagenomic analysis were displayed as pie charts using Microsoft Office 2010. NGS reads were assembled into genomes using Geneious (v.11.0.3) and MEGAHIT (v.1.2.9). PCR and Sanger sequencing was performed to fill gaps in the genome
not defined in this paper's own words; the de novo assembler that produced the contigs, used without a reference genome
wu2020-new-coronavirus-respiratory-disease-china
To investigate the possible aetiological agents associated with this disease, we collected bronchoalveolar lavage fluid (BALF) and performed deep meta-transcriptomic sequencing. The clinical specimen was handled in a biosafety level 3 laboratory at Shanghai Public Health Clinical Center. Total RNA was extracted from 200 μl of BALF and a meta-transcriptomic library was constructed for pair-end (150
a state of complete physical, mental, and social well-being and not merely the absence of disease or infirmity, in relation to the menstrual cycle
hennegan2021-menstrual-health-definition
tied to the whole menstrual cycle, not only to the days of bleeding
hennegan2021-menstrual-health-definition
We intentionally link menstrual health to the menstrual cycle. This acknowledges that menstrual-related discomforts and disorders, consequences for mental well-being, and social exclusion are not restricted to the menstrual period.
not defined in this paper's own words in this sentence
long2018-work-related-mental-distress-coalfields
Our research indicates that unemployment, and fear of becoming unemployed, also played a role in causing mental distress.
not defined in this paper's own words; poor psychological health measured through several symptoms
scholz2023-veterinary-professional-identity
Mental distress includes measures of anxiety, depression, burnout, suicidal thoughts, and substance abuse ( 29 – 31 ).
not defined in this paper's own words; closely tied to resilience and often measured as the absence of symptoms
hannon2022-perinatal-resilience-concept
Mental health is closely tied to resilience, and measures related to mental health and well-being are commonly operationalised in resilience research [ 17 , 98 ]
not defined in this paper's own words; psychological well-being, which resilience is said to improve
yan2022-resilience-stroke-patients
It enables the improvement in the mental health and QOL of individuals
consists of components related to the knowledge and abilities necessary to benefit mental health
carvalho2022-positive-mental-health-literacy
refers to the knowledge and beliefs about mental disorders that support their detection, management, or prevention
ehmann2021-work-related-health-literacy-concept
not defined in this paper's own words; stored or reactivated organization used in reasoning
desutter2017-embodied-spatial-thinking-stem
This process of generating mental representations with our bodies extends well beyond infancy.
a situation model constructed from the semantic contents and multimodal implications of a story
dijkstra2016-pronouns-literary-reading-perspective
Reading is a complex human behaviour in which several cognitive processes are involved. An elementary part of story comprehension is building a mental representation of the semantic contents of the text [ 1 ]. Stories, as compared to non-narrative texts, often cause the reader to get immersed into the story and construct multimodal situation models [ 2 ]. Immersion is a state of absorption, which
not defined in this paper's own words; alternate name for cognitive liberty
schleim2021-neurorights-history-brain-control
As already stated in the introduction, the four main neurorights are: (1) cognitive liberty; (2) mental privacy; (3) mental integrity; and (4) psychological continuity. The first, sometimes also called the right to mental self-determination, has two aspects: access to neurotechnologies and protection against their coercive and unconsented use; cognitive liberty is also considered the most fundamen
not defined in this paper's own words; synonym for cognitive liberty and sovereignty over one's mind
ienca2021-on-neurorights
As we have seen earlier, cognitive liberty was a precursor to the neuro-rights debate. Albeit there are differences in its formulation, there is a general consensus in the literature that cognitive liberty entails a person’s autonomous, unhindered control over their mind. This is well-captured by Bublitz’s (2013) use of cognitive liberty as a synonym for “mental self-determination.” According to B
not uniquely human; corvids show its behavioural hallmarks
garciapelegrin2021-evolution-storytelling
Corvid behaviours are considered hallmarks of mental time travel in non-linguistic animals.
the ability to recall the past and imagine the future
garciapelegrin2021-evolution-storytelling
Medical Subject Headings
polancolevican2022-social-media-literacy-concept
not defined in this paper's own words; the thesaurus by which a very small fraction of PubChem is classified
djoumbou-feunang2016-classyfire-automated-chemical-clas
For instance, in the PubChem database [ 19 ], only 0.12% of the >91,000,000 compounds (as of June 2016) are actually classified via the MeSH thesaurus.
not defined in this paper's own words; a graph operation that can be understood as convolution over graph nodes
reiser2022-graph-neural-networks-materials-chemistry
Message passing can also be understood as a convolution operation running over each node in a graph.
not defined in this paper's own words; recursive graph-information propagation
jiang2021-graph-neural-networks-molecular-representation
Essentially, GNN aims to learn the representations of each atom by aggregating the information from its neighboring atoms encoded by the atom feature vector and the information of the connected bonds encoded by the bond feature vector through message passing across the molecular graph recursively (Fig. 1 ), followed by the state updating of the central atoms and read-out operation. Then, the learn
not defined in this paper's own words; MPNN node-embedding phase
jiang2021-graph-neural-networks-molecular-representation
MPNN is a common framework for GNN that was used for chemical prediction in 2017 by Gilmer et al. [ 54 ], and it has shown versatility in many applications such as natural language processing, image segmentation, chemical/molecular graphs, and so on. Many recently proposed GNN architectures for molecular property prediction can be formulated in this flexible framework [ 24 , 26 , 34 , 37 ]. In the
not defined in this paper's own words; the phase in which messages propagate node information along edges to neighboring nodes
reiser2022-graph-neural-networks-materials-chemistry
This is done in the so-called message passing phase, in which node information is propagated in form of messages m v through edges to neighboring nodes. The embedding of each node is then updated based on all incoming messages.
not defined in this paper's own words; microbial products forming part of the theatre of activity
berg2020-microbiome-definition-re-visited-o
The microbiota comprises all living members forming the microbiome. Etymology and differences of both terms are explained in Table 2 . Bacteria, archaea, fungi, algae, and small protists should be considered as members of the microbiome [ 25 ]; most microbiome researchers agree with this definition. The integration of phages, viruses, plasmids, and mobile genetic elements is one of the most contro
not defined in this paper's own words; products encoded by microbial genes
rinninella2019-what-is-the-healthy-gut-microbiota
The human gastrointestinal (GI) tract contains an abundant and diverse microbial community that gathers more than 100 trillion microorganisms \ [1\]. The density of bacterial cells in the colon has been estimated at 1011 to 1012 per milliliter which makes the colon one of the most densely populated microbial habitats known on earth \ [2\]. The gut microbiome encodes over 3 million genes producing
not defined in this paper's own words; metabolite-level analysis of microbial functioning
berg2020-microbiome-definition-re-visited-o
Currently available methods for studying microbiomes, so-called multi-omics, range from high throughput isolation (culturomics) and visualization (microscopy), to targeting the taxonomic composition (metabarcoding), or addressing the metabolic potential (metabarcoding of functional genes, metagenomics) to analyze microbial activity (metatranscriptomics, metaproteomics, metabolomics) (Fig. 5 ). Bas
not defined in this paper's own words; profiling the small-molecule metabolites of a sample
garciagutierrez2020-biomarkers-psychiatry
Consequently, metabolomics are of particular interest because, in contrast to genomics, captures the dynamic nature of the disease, and in contrast to proteomics, metabolomics measure the final products produced by complex interactions between proteins, signalling cascades and cellular environments.
not defined in this paper's own words; genomes reconstructed directly from community sequence data
berg2020-microbiome-definition-re-visited-o
Currently available methods for studying microbiomes, so-called multi-omics, range from high throughput isolation (culturomics) and visualization (microscopy), to targeting the taxonomic composition (metabarcoding), or addressing the metabolic potential (metabarcoding of functional genes, metagenomics) to analyze microbial activity (metatranscriptomics, metaproteomics, metabolomics) (Fig. 5 ). Bas
not defined in this paper's own words; population genomes binned from community sequencing
lawson2017-anammox-metabolic-network
This resulted in the recovery of 17 draft metagenome-assembled genomes (MAGs) affiliated with the phyla Planctomycetes, Chlorobi, Bacteroidetes, Chloroflexi, Proteobacteria and the candidate phylum Microgenomates (OP11; Table 1 ).
not defined in this paper's own words; application area for taxonomic sequence classification
wood2019-improved-metagenomic-analysis-kraken-2
Assigning taxonomic labels to sequencing reads is an important part of many computational genomics pipelines for metagenomics projects. Recent years have seen several approaches to accomplish this task in a time-efficient manner [ 1 – 3 ]. One such tool, Kraken [ 4 ], uses a memory-intensive algorithm that associates short genomic substrings ( k -mers) with the lowest common ancestor (LCA) taxa. K
not defined in this paper's own words; community-genome analysis of metabolic potential
berg2020-microbiome-definition-re-visited-o
Currently available methods for studying microbiomes, so-called multi-omics, range from high throughput isolation (culturomics) and visualization (microscopy), to targeting the taxonomic composition (metabarcoding), or addressing the metabolic potential (metabarcoding of functional genes, metagenomics) to analyze microbial activity (metatranscriptomics, metaproteomics, metabolomics) (Fig. 5 ). Bas
not defined in this paper's own words; microbial-community nucleotide analysis domain
rognese2016-vsearch-metagenomics
VSEARCH is an open source and free of charge multithreaded 64-bit tool for processing and preparing metagenomics, genomics and population genomics nucleotide sequence data. It is designed as an alternative to the widely used USEARCH tool ( Edgar, 2010 ) for which the source code is not publicly available, algorithm details are only rudimentarily described, and only a memory-confined 32-bit version
a 3D digital space mixed with the real and virtual worlds, which runs off a lot of limitations (e.g., time, location) of the physical world
zhang2022-metaverse-in-education-definition
etymology: a compound of meta- (beyond; transcending) and verse (from universe), denoting a new virtual universe created beyond the real world
zhang2022-metaverse-in-education-definition
Metaverse is a compound word combined with “meta-” (beyond; transcending) and “verse” (the root of “universe,” cosmos; the whole world), which denotes a new virtual universe created beyond the real world.
the paper finds no consensus definition and no single, unified entity called the metaverse
zhang2022-metaverse-in-education-definition
In this case, the definition of the metaverse seems not to reach a consensus, and there is no single, unified entity called the metaverse; rather, some applications conceive the metaverse with some of its possible features.
teams, individuals, or local structures
mohler2015-credeci-2-guideline
what takes place inside and around the clinical encounter
scholl2014-patient-centeredness-concept
not defined in this paper's own words; the diversity of soil archaea, bacteria and fungi, counted as OTU richness
hu2021-aridity-biodiversity-soil-multifunctionality
Our results show a strong positive association between plant species richness and soil multifunctionality in less arid regions, whereas microbial diversity, in particular of fungi, is positively associated with multifunctionality in more arid regions.
not defined in this paper's own words; community property proposed to help prevent disease
berg2020-microbiome-definition-re-visited-o
The division of microorganisms into beneficial, pathogenic, and neutral based on microbial interactions with their hosts is a part of the widely cited microbiome definition by Lederberg and McCray [ 42 ]. According to their interpretation, antagonistic coevolution includes host-parasite interactions, while mutualistic coevolution is present when positive interactions prevail (Fig. 6 ). Such positi
`a characteristic microbial community occupying a reasonable well-defined habitat which has distinct physio-chemical properties ... not only refers to the microorganisms involved but also encompass their theatre of activity, which results in the formation of specific ecological niches`
berg2020-microbiome-definition-re-visited-o
The microbiome is defined as a characteristic microbial community occupying a reasonable well-defined habitat which has distinct physio-chemical properties. The microbiome not only refers to the microorganisms involved but also encompass their theatre of activity, which results in the formation of specific ecological niches. The microbiome, which forms a dynamic and interactive micro-ecosystem pro
not defined in this paper's own words; the term this paper exists to define - the microbial community plus its theatre of activity
berg2020-microbiome-definition-re-visited-o
When it comes to the use of specific terms, a clear differentiation between microbiome and microbiota helps to avoid the controversy concerning the members of a microbiome (Fig. 2 ). Microbiota is usually defined as the assemblage of living microorganisms present in a defined environment [ 25 ]. As phages, viruses, plasmids, prions, viroids, and free DNA are usually not considered as living microo
not defined in this paper's own words; cell-level visualization method
berg2020-microbiome-definition-re-visited-o
Currently available methods for studying microbiomes, so-called multi-omics, range from high throughput isolation (culturomics) and visualization (microscopy), to targeting the taxonomic composition (metabarcoding), or addressing the metabolic potential (metabarcoding of functional genes, metagenomics) to analyze microbial activity (metatranscriptomics, metaproteomics, metabolomics) (Fig. 5 ). Bas
not defined in this paper's own words; imaging method used to study cellular function
carpenter2006-cellprofiler
Examining cells by microscopy has long been a primary method for studying cellular function. When cells are stained appropriately, visual analysis can reveal biological mechanisms. Advanced microscopes can now, in a single day, easily collect thousands of high resolution images of cells from time-lapse experiments and from large-scale screens using chemical compounds, RNA interference (RNAi) reage
not defined in this paper's own words; heterogeneous spontaneous thought during reading
fabry2019-mind-wandering-reader-predictive-enculturation
For a long time, researchers in the cognitive sciences were mostly interested in participants paying close attention to the cognitive tasks (e.g., reading, problem solving, reasoning) they are required to complete under laboratory and every-day conditions. The relevant on-going cognitive processes are therefore supposed to be task-related (Smallwood, 2011 ; Broadway et al., 2015 ; Metzinger, 2015
task-relevant virtual exploration rather than simple disengagement
fabry2019-mind-wandering-reader-predictive-enculturation
The enculturated predictive processing framework with its emphasis on the importance of probability designs provides us with a refined and more nuanced account of reading that helps specify the role of mind-wandering episodes in reading processes. In particular, our view on the relationship of reading and mind-wandering suggests that at least some cases of “tuning out” are an integral component of
a state of being openly attentive to and aware of what is taking place in the present moment, internally and externally
stedham2019-mindfulness-trust-leadership
not defined in this paper's own words; a positive influence on developing resilience
aryuwat2022-resilience-nursing-students-review
In addition, mindfulness was another positive influencing factor for developing resilience in nursing students
not defined in this paper's own words; the subgraph whose retention preserves hierarchy in PMFG
song2015-megena-gene-coexpression-network
the preservation of hierarchy by retaining Minimum Spanning Tree (MST) as a subgraph
not defined in this paper's own words; drawn between nodes that are CLUSTERS OF CELLS, not cells - the paper's first stage, and the step it shares with TSCAN and Waterfall
street2018-slingshot-cell-lineage-and-pseudot
In its first step, Slingshot identifies lineages by treating clusters of cells as nodes in a graph and drawing a minimum spanning tree (MST) between the nodes, similar to the work of [ 7 , 10 ]. Lineages are then defined as ordered sets of clusters created by tracing paths through the MST, starting from a given root node. Our method differs however in a number of important respects from those of [
In humans, the preattentive detection of auditory changes is indexed by an electrical brain response with a fronto-central scalp distribution termed the mismatch negativity (MMN) of event-related potentials (ERPs)
Ruusuvirta2013-auditory-cortical-and-hippocampal-system-mis
Specifically, the mismatch negativity (MMN) is a neurophysiological difference waveform peaking in the 150–250 ms window after stimulus onset.
Zhou2020-stimulus-specific-regulation-of-visual-oddba
a disorder of decreased tolerance to specific sounds or stimuli associated with such sounds
swedo2022-misophonia-consensus-definition
an impulsive aversive bodily and emotional reaction to particular repetitive stimuli
schroder2020-misophonia-phenomenology-large-sample
Misophonia is a recently recognized condition, characterized by an impulsive aversive physical reaction of irritation, anger, or disgust when confronted with specific, repetitive stimuli (for instance, eating sounds).
not defined in this paper's own words; distinct psychiatric condition proposed from a trigger-response phenotype
schroder2020-misophonia-phenomenology-large-sample
In conclusion, this analysis of a large sample confirms that misophonia is a distinct psychiatric disorder characterized by an intense emotional reaction of irritation, anger, and often disgust elicited by specific auditory, visual or sensory triggers predominantly induced by another person, resulting in preoccupation and avoidance. We suggest future studies to use the revised Amsterdam UMC propos
Multiple myeloma
zhang2020-gadd45b-multiple-myeloma-model
moral machine
takemoto2024-moral-machine-large-language-models
not defined in this paper's own words; the force field used for initial structures and conformer search
hoja2021-qm7x-quantum-mechanical-properties
Based on these SMILES strings, initial 3D structures were obtained using the MMFF94 force field 31 – 35 via the gen3d option in Open Babel 36 .
not defined in this paper's own words; the force field used to pre-optimize generated structures
smith2017-ani1-dataset-organic-molecules
The 3D structures are then pre-optimized to a stationary point using the MMFF94 force field 38 as implemented in RDKit.
MMN is quantified by arithmetically subtracting ERPs to the standard tone from ERPs to the deviant tone.
Ruusuvirta2013-auditory-cortical-and-hippocampal-system-mis
Specifically, the mismatch negativity (MMN) is a neurophysiological difference waveform peaking in the 150–250 ms window after stimulus onset. The MMN refers to the difference in evoked response to the standard and deviant stimulus. Importantly, the MMN is distinct from the N100 (occurring between 50 and 150 ms post stimulus onset) and the P300 (occurring around 300–400 ms) components with respect to function and timing relative to stimulus onset
Zhou2020-stimulus-specific-regulation-of-visual-oddba
not defined in this paper's own words; Many-against-Many sequence searching, the fast homology search
mirdita2022-colabfold
Here, we present ColabFold, a fast and easy-to-use software for the prediction of protein structures and homo- and heteromer complexes, for use as a Jupyter Notebook inside Google Colaboratory, on researchers’ local computers as a notebook or through a command line interface. ColabFold speeds up single predictions by replacing AlphaFold2’s homology search with the 40–60-fold faster MMseqs2 (Many-a
not defined in this paper's own words; sequence-mapping option with a different size-speed regime
cantalapiedra2021-eggnog-mapper-v2-functional-annotation
Workflow and new features of eggNOG-mapper v2. ( A ) The gene prediction stage uses Prodigal to perform protein prediction from assembled contigs. ( B ) During the search stage, HMMER3, Diamond, or MMseqs2 can be used to align the input proteins to eggNOG v5. ( C ) During the orthology inference stage, a report of orthologs is generated based on the desired taxonomic scope. ( D ) Finally, protein
help demonstrate all the defining attributes of a concept and helps to better articulate its meaning [ 17 ]
cao2023-nursing-professionalism-concept
instances that clearly embody all the critical aspects of that concept
hou2022-violence-against-nurses-emergency
not defined in this paper's own words; confidence in local or pairwise aspects of a predicted structure
varadi2021-alphafold-protein-structure-database
Each protein has a dedicated structure page that shows basic information (drawn from UniProt ( 5 ) and PDBe ( 6 )) and three separate outputs of the AlphaFold model. The first two outputs are the 3D coordinates and the per-residue confidence metric pLDDT, which is used to colour the residues of the model in the integrated 3D molecular viewer, Mol* ( 20 ). Model confidence can vary significantly al
the difference in prior-corrected log-probability between the top answer and the second highest
lampinen2024-language-models-content-effects-reasoning
factors that increase or decrease a strategy's influence on an outcome
lewis2018-classification-causality-implementation-mechanisms
Finally, there are two types of effect modifiers that are important to articulate, both of which can occur across multiple levels of analysis: moderators and preconditions. Moderators are factors that increase or decrease the level of influence of an implementation strategy on an outcome. See Figure 1 in which an example for intra-individual and organizational-level moderators for audit and feedba
not defined in this paper's own words; factors that change the influence of a strategy on an outcome
lewis2018-classification-causality-implementation-mechanisms
First, it is important to ensure that implementation strategies are appropriately specified. Some strategies in published compilations are well defined but may not be specified in terms of its core component that can have a reliable and measureable impact. Second, linkages between strategies and mechanisms need to be generated. Existing compilations do not offer mechanisms by which strategies act,
The appealingly simple idea of a block structure has been formalized in the measure of modularity, Q 3 4 , calculated as the difference between observed and expected within-group interactions, divided by the total number of interactions.
grilli2016-ecological-modularity
not defined in this paper's own words; the community-partition criterion used in the page network
bessi2015-science-conspiracy-misinformation
To test the community partitioning we use two well known community detection algorithms based on modularity [ 55 , 56 ]. The former algorithm is based on multi-level modularity optimization. Initially, each vertex is assigned to a community on its own. In every step, vertices are re-assigned to communities in a local, greedy way. Nodes are moved to the community in which they achieve the highest m
subsets of traits that show more correlation with one another
yim2025-evolutionary-theory-forensic-anthropology
Each index was derived from the area under the ROC curve (auROC), and defined as 2×( auROC –0.5)
Pho2018-task-dependent-representations-of-stimulus-a
To quantify an ROI’s stimulus preference, a modulation index was calculated: S pref - S Opp S pref + S Opp where S Pref and S Opp corresponded to the trial-averaged response during the 300–1,500 ms epoch to the preferred stimulus and opponent stimulus, respectively. This modulation index was calculated for both the MMR and control activity for each ROI.
Zhou2020-stimulus-specific-regulation-of-visual-oddba
NEUROCHEMICAL MODULES WITH A HIGH DENSITY OF GAD67-POSITIVE TERMINALS HAVE BEEN REPORTED AS A HALLMARK FOR THE LCIC
Wong2019-tonotopic-and-non-auditory-organization-of-t
any TURBOMOLE executable, auxiliary program, interactive tool or script
balasubramani2020-turbomole-quantum-chemistry-program
The TURBOMOLE program suite consists of almost 25 main executables and more than 100 auxiliary programs, interactive tools, and scripts (referred to as modules further on), as well as separate basis set and structure libraries, documentation, and an automated test suite.
not defined in this paper's own words; GAD67-dense neurochemical zones, the hallmark of LCIC, observed here on BOTH sides of the border
Wong2019-tonotopic-and-non-auditory-organization-of-t
We observed that although the somata of both cells seemed to reside in the extramodular regions, both possessed dendrites that extended into a GAD67-dense module ( Figure 10 ).
not defined in this paper's own words; supported-tool parser extensions
ewels2016-multiqc-analysis-results
MultiQC supports a lot of common bioinformatics tools but it is inevitable that research groups may have their own bespoke scripts or require other customization. To accommodate this, MultiQC is built in such a way that custom code can be tied into its functionality easily. Code hooks allow external plugins to access and modify the internal workings of the program. The use of Python setuptools ent
not defined in this paper's own words; reusable processing units arranged sequentially in a pipeline
carpenter2006-cellprofiler
Most image analysis projects, even for new cell types or assays, can be accomplished simply by pointing and clicking using CellProfiler's graphical user interface (Figure 1a ). The software uses the concept of a 'pipeline' of individual modules (Figure 1b ; Additional data file 2). Each module processes the images in some manner, and the modules are placed in sequential order to create a pipeline:
not defined in this paper's own words; computational prediction of receptor-ligand binding conformation
mcnutt2021-gnina-molecular-docking-deep-learning
Molecular docking is a computational procedure in which the non-covalent bonding of molecules, e.g. a protein receptor and a ligand, is predicted. This prediction outputs the conformation and, usually, the binding affinity of the small molecule in its predicted minimal energy state and is used to virtually screen large libraries of compounds [ 1 – 3 ]. Docking is composed of two main steps: sampli
not defined in this paper's own words; computational placement and interaction analysis of precursors and products in COX active sites
bhardwaj2017-in-situ-click-chemistry-cox2-inhibitors
Molecular docking indicated that 5-azido-pyrazole ( 14 ) and alkynes ( 6c and 15a ) were favorably oriented in such a way that the azide group (-N 3 ) is present in proximity of 4-ethynyl group (-C≡CH) of both alkynes; and the calculated distance between the terminal carbon atom of the ethynyl groups in 6c ( R 1 = F) and 15a ( R 1 = NH 2 ) and one of the nitrogen atoms of the azide group in compou
a graph mapping atoms and bonds to nodes and edges
david2020-molecular-representations-ai-drug-discovery-review
The idea behind the molecular graph representation lies in mapping the atoms and bonds that make up a molecule into sets of nodes and edges . Intuitively, one could imagine treating the atoms in a molecule as nodes and the bonds as edges , although there is no reason one could not consider other mappings. In typical graph representations, the nodes are represented using circles or spheres, and the
atoms as nodes and bonds as edges connected in a graph
jiang2021-graph-neural-networks-molecular-representation
Molecular property modelling, which assists in hunting for chemicals with desired pharmacological and ADME/T (absorption, distribution, metabolism, excretion, and toxicity) properties, is one of the most classical cheminformatics tasks [ 1 , 2 ]. A variety of machine learning (ML) approaches, such as Naive Bayes (NB) [ 3 – 5 ], k-Nearest Neighbors (k-NN) [ 6 ], logistic regression (LR) [ 7 , 8 ],
not defined in this paper's own words; an undirected representation of molecular structure in which nodes correspond to atoms and edges to chemical bonds
reiser2022-graph-neural-networks-materials-chemistry
The molecular structure is represented by an undirected graph, where nodes correspond to atoms and edges correspond to chemical bonds.
choice between sacrificing vehicle passengers or pedestrians
frank2019-human-biases-autonomous-vehicle-moral-dilemmas
The stimuli used in this study and subsequent ones were adapted from the Moral Machine experiment (available at https://moralmachine.mit.edu/ ). The dilemma represents a modern variant of the original trolley dilemma 18 , in which an autonomous vehicle faces a critical incident with inevitably fatal consequences (see Supplementary materials for stimuli used in all studies). The decision-maker must
not defined in this paper's own words; selection between fatal passenger and pedestrian outcomes
frank2019-human-biases-autonomous-vehicle-moral-dilemmas
Participants’ moral decisions were recorded as their choice to sacrifice the pedestrian(s) or passenger(s) for each presented dilemma. Demographic and control variables included age, gender, education, residential area (city center, suburbs, countryside), use frequency of transportation means (bike, bus, car, train, walking, and airplane; measured on 5-point scales, 1 = “never,” 2 = “few times a y
MI is posited to have two non-exclusive forms: internalizing outcomes of personal transgressive acts and externalizing outcomes of being the victim of others' transgressions
litz2022-moral-injury-syndrome
MI is posited to have two non-exclusive forms, namely, internalizing outcomes associated with personal transgressive acts and externalizing outcomes associated with being the victim of other's transgressions ( 8 ).
the dividing line between moral distress and injury is chiefly the degree of functional impact related to the PMIE
litz2022-moral-injury-syndrome
the outcome associated with exposure to PMIEs
litz2022-moral-injury-syndrome
not defined in this paper's own words; drawing on one's moral standing or moral capital to excuse conduct
miller2023-self-deception-clinical-nursing
The concept of “moral licensing” which is about one’s “moral standing or moral capital” as opposed to self-deception, which is “concerned with facts, and hence should not be conflated with moral licensing” (p. 542), also appears to be foreign to nursing literature.
refers to the phenomenon where individuals allow themselves to engage in morally ambiguous or immoral behavior because of past moral or socially acceptable behavior
zhao2021-compensatory-belief-health-behavior
not defined in this paper's own words; illness burden targeted through behavior change
vlaev2019-financial-incentives-health-behavior
The effect of individual behavior on health outcomes is considerable with estimates that up to 40% of premature deaths in the developed world are attributable to unhealthy behaviors, such as smoking, poor diet and sedentary lifestyle [ 1 ]. Reducing morbidity and mortality losses in the future is likely to depend as much on motivating changes in behavior as on developing new treatments or technolo
not defined in this paper's own words; the burden of illness a patient carries
gallacher2013-treatment-burden-concept
Nonadherence to management strategies by patients with chronic disease is a global health problem [9] and has the potential to lead to negative outcomes for patients such as increased morbidity and wasted expenditure for health care systems [1] , [10] .
molecular-descriptor software providing Python, CLI, and web interfaces
moriwaki2018-mordred-molecular-descriptor-calculator
In this paper, we propose Mordred, a newly developed molecular-descriptor calculation software program. The software can calculate more than 1800 descriptors at high speed, and it can be used from the CLI and web UI, as well as with Python 2 and 3 libraries. Mordred was released under the three-clause Berkeley Software Distribution (BSD) license, which allows both commercial and non-commercial use
not defined in this paper's own words; open-source molecular-descriptor calculation software
moriwaki2018-mordred-molecular-descriptor-calculator
Molecular descriptors are widely employed to present molecular characteristics in cheminformatics. Various molecular-descriptor-calculation software programs have been developed. However, users of those programs must contend with several issues, including software bugs, insufficient update frequencies, and software licensing constraints. To address these issues, we propose Mordred, a developed des
not defined in this paper's own words; shape-related properties measured for cells or biological objects
mcquin2018-cellprofiler-next-generation-image
CellProfiler provides advanced algorithms for image analysis, organized as individual modules that can be placed in sequential order to form a pipeline. This pipeline is then used to identify and measure cells or other biological objects and their morphological features
not defined in this paper's own words; dying-cell morphology that does not necessarily track RCD immunogenicity
galluzzi2020-consensus-guidelines-for-the-definition-detection-and
The morphological features displayed by dying cells and the molecular mechanisms that are mechanistically responsible for the cellular demise do not necessarily correlate with the immunogenicity of RCD. 58 Thus, while specific instances of caspase 3 (CASP3)-dependent apoptosis and mixed lineage kinase domain-like pseudokinase (MLKL)-dependent necroptosis initiate adaptive immunity in certain exper
not defined in this paper's own words; one side of the argument the paper wants retired
padial2010-the-integrative-future-of-taxonomy
In short, future discussions in taxonomy should not be about morphology versus molecules but about how characters reflect lineage divergence or about the functional relevance of some characters in the speciation process. As a consequence, taxonomy will no longer be a science restricted to the description of patterns but will be tightly linked to the study of processes generating diversity.
not defined in this paper's own words; cell shape and axonal projection as a classification criterion
Yavorska2016-somatostatin-expressing-inhibitory-interneur
X94 cells account for about half of L4 SOM cells and have a basket-like morphology with mostly local axonal projections (unlike the striking L1 projection seen in Martinotti cells).
not defined in this paper's own words; cell shape; insufficient alone, since BOTH DISC-SHAPED AND STELLATE CELLS CAN BE GLUTAMATERGIC OR GABAERGIC
Goyernd-a-novel-class-of-inferior-colliculus-princip
This is unsurprising in the ICd and IClc, where stellate morphology predominates, but warranted further analysis in the ICc, where stellate cells can have oriented dendritic trees but are outnumbered by the more highly oriented disc-shaped cells ( Malmierca et al., 1993 ; Oliver and Morest, 1984 ; Willard and Ryugo, 1983 ).
not defined in this paper's own words; primary enteral diet proposed for premature infants
rinninella2019-what-is-the-healthy-gut-microbiota
Lactoferrin (LF) is another well-known component of human milk favoring gut infant colonization with beneficial bacteria and consequently representing a crucial role played in preterm infants’ microbiota \ [22\]. Indeed, correlations between LF and beneficial microbiota in breast milk and infant’s feces have been demonstrated \ [22\]. High levels of fecal LF, particularly in preterm infants, may r
not defined in this paper's own words; the infant's own mother's breast milk
rusi2024-commercialization-human-milk-concept
However, approximately 40% of infants in the neonatal intensive care (NICU) setting lack access to their mother’s own milk (MOM; Israel-Ballard, 2018 ).
a graph-neural-network framework with message-passing and readout phases
jiang2021-graph-neural-networks-molecular-representation
MPNN is a common framework for GNN that was used for chemical prediction in 2017 by Gilmer et al. [ 54 ], and it has shown versatility in many applications such as natural language processing, image segmentation, chemical/molecular graphs, and so on. Many recently proposed GNN architectures for molecular property prediction can be formulated in this flexible framework [ 24 , 26 , 34 , 37 ]. In the
message passing neural network
jiang2021-graph-neural-networks-molecular-representation
The present study attempts to give a comprehensive evaluation of descriptor-based and graph-based models on 11 public datasets with different property endpoints. Four ML algorithms were used to develop the descriptor-based models, including SVM, extreme gradient boosting (XGBoost), RF and deep neural networks (DNN). In order to better represent the chemical and structure features of the molecules
Microplastics
ross2021-polyester-fibres-arctic-ocean
any particle of synthetic plastic smaller than 5 mm
ross2021-polyester-fibres-arctic-ocean
not defined in this paper's own words; effective number of aligned sequences affecting accuracy
jumper2021-highly-accurate-protein-structure-prediction-alphafold
MSA depth and cross-chain contacts Although AlphaFold has a high accuracy across the vast majority of deposited PDB structures, we note that there are still factors that affect accuracy or limit the applicability of the model. The model uses MSAs and the accuracy decreases substantially when the median alignment depth is less than around 30 sequences (see Fig. 5a for details). We observe a thresho
not defined in this paper's own words; how many effective sequences the alignment holds
abramson2024-alphafold3
While expanding in modelling abilities, AF3 has also improved in protein complex accuracy relative to AlphaFold-Multimer (v.2.3) 7 , 8 . Generally, protein–protein prediction success (DockQ > 0.23) 40 has increased (paired Wilcoxon signed-rank test, P = 1.8 × 10 −18 ), with antibody–protein interaction prediction in particular showing a marked improvement (Fig. 1c (right); paired Wilcoxon signed-r
mean square error
unal2017-roc-optimal-cut-point
not defined in this paper's own words; the error against ground truth, reduced approximately two-fold by deconvolution
Spivak2022-deconvolution-improves-the-detection-and-qua
First, we compared estimation performance with and without deconvolution by computing the mean square error (MSE) for the STG-based methods, for which a ground truth exists (Fig.
Markov state model
mardt2018-vampnets-deep-learning-molecular-kinetics
men who have sex with men
buot2014-distal-sociological-determinants-hiv
not defined in this paper's own words; comparing many candidate regression models to rank predictors of completeness
meyer2015-global-priorities-biodiversity-distributions
Multi-model inference reveals that completeness is mainly limited by distance to researchers, locally available research funding and participation in data-sharing networks, rather than transportation infrastructure, or size and funding of Western data contributors as often assumed.
not defined in this paper's own words; inference across several supported candidate models
harrison2018-mixed-effects-modelling-ecology
The use of linear mixed effects models (LMMs) is increasingly common in the analysis of biological data. Whilst LMMs offer a flexible approach to modelling a broad range of data types, ecological data are often complex and require complex model structures, and the fitting and interpretation of such models is not always straightforward. The ability to achieve robust biological inference requires th
The concept of multifunctionality in GI planning means that multiple ecological, social, and also economic functions shall be explicitly considered instead of being a product of chance (ibid.).
hansen2014-from-multifunctionality-to-multiple-ecosystem-services-a
not defined in this paper's own words; short for ecosystem multifunctionality
lefcheck2015-biodiversity-ecosystem-multifunctionality
Alternatively, tradeoffs among functions may decrease multifunctionality if some functions must be low for others to be high 11 , 13 , 19 .
not defined in this paper's own words; handling non-informative missing observations
harrison2018-mixed-effects-modelling-ecology
When collecting ecological data it is often not possible to measure all of the predictors of interest for every measurement of the dependant variable. Such missing data are a common feature of ecological datasets, however the impacts of this have seldom been considered in the literature ( Nakagawa & Freckleton, 2011 ). Incomplete rows of data in dataframes i.e. those missing predictor and/or respo
not defined in this paper's own words; missing-data recovery by repeated imputation
boateng2018-best-practices-developing-validating-scales
In addition to these techniques, some researchers opt to delete items with large numbers of cases that are missing, when other missing data-handling techniques cannot be used ( 81 ). For cases where modern missing data handling can be used, however, several techniques exist to solve the problem of missing cases. Two of the approaches have proven to be very useful for scale development: full inform
not defined in this paper's own words; multi-core execution feature
bolger2014-trimmomatic-flexible-trimmer
Performance can be improved using multiple threads if multiple CPU cores are available. The number of threads to use can be specified by the user or will be determined automatically if unspecified.
not defined in this paper's own words; parallel CPU execution
rognese2016-vsearch-metagenomics
When searching nucleotide sequences, VSEARCH uses a fast heuristic based on words shared by the query and target sequences in order to quickly identify similar sequences, a similar strategy is probably used in USEARCH. VSEARCH then performs optimal global sequence alignment of the query against potential target sequences, using full dynamic programming instead of the seed-and-extend heuristic used
a new co-expression network analysis framework
song2015-megena-gene-coexpression-network
not defined in this paper's own words; a network method finding overlapping gene modules at several scales
mckenzie2018-brain-cell-coexpression-networks
as can be performed by MEGENA (Multiscale Embedded Gene Co-expression Network Analysis) 25 .
not defined in this paper's own words; the late endosomal organelle whose fusion with the plasma membrane defines exosome release, and whose alternative fate is the lysosome
hessvik2017-current-knowledge-on-exosome-bioge
Exosomes are nanosized membrane vesicles released by fusion of an organelle of the endocytic pathway, the multivesicular body, with the plasma membrane.
the internal compartment via which an exosome is released, as against the cell surface for an ectosome
welsh2024-minimal-information-for-studies-of
The term ‘exosome’ refers to EVs from internal compartments of the cell that are released via the multivesicular body (MVB), while the term ‘ectosome’ (a.k.a., microvesicle, microparticle) refers to EVs from the cell surface.
These 2D materials obtained by etching MAX phases are named as “MXenes” because of their similarity in layered structure to graphene.
zhong2016-transition-metal-carbides-and-nitrides-in-energy
Another young family of 2D materials named “MXenes” with the formula of M n +1 X n T X , are usually produced by selectively etching the A-group (mainly group IIIA or IVA elements) layers from M n +1 AX n phases ( n = 1, 2, or 3), where M is an early transition metal and X is carbon and/or nitrogen.
ding2018-mxene-molecular-sieving-membranes-for-highly-efficient
USED HERE AS A MEASURED MEDIATOR ON SESSION DAY, not as a description of how the drug felt. It is the variable through which dose reaches therapeutic outcome, which makes it part of the causal claim rather than a side observation
griffiths2016-psilocybin-produces-substantial-an
Mystical-type psilocybin experience on session day mediated the effect of psilocybin dose on therapeutic outcomes.
not defined in this paper's own words; unitive state whose magnitude predicts longer-term outcomes
milliere2018-psychedelics-meditation-self-consciousness
While the long-term consequences of ego dissolution on self-consciousness are uncertain, there is preliminary evidence that drug-induced alterations of self-consciousness may mediate therapeutic outcomes. The current model of psychedelic-assisted therapy originated in the 50's and 60's (Pahnke et al., 1971 ; Dyck, 2006 ). In this model, subjects receive a high dose of a psychedelic drug in a suppo
In order to quantify the differences in the AEF waveform between left and right, as well as between contralateral and ipsilateral hemispheres, we focused on the analysis of the N100m response. Although we do not expect AEF differences to be expressed exclusively in the N100m, this component is typically the most prominent of the AEF components, and therefore lends itself to quantification.
Kohl2022-neural-mechanisms-underlying-human-auditory
not defined in this paper's own words; the component everything is quantified on
Kohl2022-neural-mechanisms-underlying-human-auditory
As expected based on prior studies (e.g. Peronnet et al. 1974 ; Wolpaw and Penry 1977 ; Pantev et al. 1998 ), we found that N100m magnitudes were larger in contralateral compared to ipsilateral ( F (1,9) = 7.72, p = 0.021, η 2 = 0.46) and right compared to left hemispheres ( F (1,9) = 5.71, p = 0.041, η 2 = 0.39; interaction p > 0.67). N100m latency differences did not reach significance, but ther
an electrophysiological measure whose magnitude varies with ease of semantic processing
nieuwland2018-limit-probabilistic-prediction
What promoted linguistic prediction from outlandish and deeply contentious to ubiquitous and somewhat anodyne? One of the key and most acclaimed pieces of empirical evidence for linguistic prediction to date comes from a landmark Nature Neuroscience publication by DeLong et al. (2005) , whose approach exploited a phonological rule of English whereby the indefinite article is realized as a before c
not defined in this paper's own words; electrophysiological index sensitive to contextual processing
nieuwland2018-limit-probabilistic-prediction
We first performed baseline correction by subtracting the average amplitude in the 100 ms time window before word onset. Baseline-corrected ERPs for relatively expected and unexpected words and difference waveforms are shown in Figure 3 . Then, for the data pooled across all laboratories, we used linear mixed effects models to regress the N400 amplitude (in a spatiotemporal region of interest sele
not defined in this paper's own words; pressing an AFM tip into suspended film to measure its elastic modulus
kim2015-large-area-multilayer-hexagonal-boron-nitride
An AFM was used to measure the elastic modulus of the h-BN film through a nanoindentation technique 53 .
not defined in this paper's own words; pressing the MoS 2 sheet onto the nanocones so it conforms to them and is strained
li2015-strain-textured-mos2-artificial-atoms
The evaporation of ethylene glycol that fills the gap between the MoS 2 and nanocones generates capillary force that pulls down the MoS 2 sheet, causing it to conform to the topography of the nanocones and accomplishing the nanoindentation.
not defined in this paper's own words; what particles below 1 micrometre are USUALLY REFERRED TO AS - the boundary is a naming habit rather than a definition
koelmans2019-microplastics-in-freshwaters-and-d
Microplastics are generally characterised as water-insoluble, solid polymer particles that are ≤5 mm in size ( Bergmann et al., 2015). A formal definition for the lower size boundary does not exist, but particles below 1 μm are usually referred to as nanoplastics rather than microplastic
`particles that are unintentionally produced within the size range from 1 to 1000 nm` - a size band whose top is the microplastic floor, plus a criterion about how the particle came to exist
campanale2020-a-detailed-review-study-on-potenti
The authors of [ 111 ] observed the Pb absorption capacity on nanoplastics (particles that are unintentionally produced within the size range from 1 to 1000 nm [ 113 ]) that were produced from microplastics that were collected on a beach exposed to the North Atlantic Gyre.
not defined in this paper's own words; a category studied under two distinct philosophical projects
crane2021-two-approaches-natural-kinds
Philosophical treatments of natural kinds are embedded in two distinct projects. I call these the philosophy of science approach and the philosophy of language approach. Each is characterized by its own set of philosophical questions, concerns, and assumptions. The kinds studied in the philosophy of science approach are projectible categories that can ground inductive inferences and scientific exp
philosophy of science sense (projectible category grounding induction) versus philosophy of language sense (referential object of a natural kind term)
crane2021-two-approaches-natural-kinds
A philosophical approach to natural kinds is motivated by a family of questions, concerns, and assumptions that influence the nature of the accounts generated. The philosophy of language approach starts with the widely embraced “direct reference theory” of natural kind terms of the sort introduced by Kripke (1980) and Putnam (1975). It is more or less assumed that some version of a direct referenc
not defined in this paper's own words; a term whose reference is a kind fixed by paradigm instances and shared essential properties
koch2020-engineering-what
Reference-Fixing. The reference of a kind term t is established via ostension or a reference-fixing description of a set of paradigm instances of a kind k. A mechanism of implicit or explicit generalization makes sure that all and only tokens of k are in the extension of t. Whether or not a token belongs to k is a matter of shared essential properties.
a term with a dual-level semantics, identifying members by observable features while referring to underlying features
crane2021-two-approaches-natural-kinds
Hacking (2007) claims that contemporary philosophers use the term “natural kind” in so many ways that it no longer refers to any well-defined class. He believes the literature has devolved into a “scholastic twilight” from the “heady days of the 1970s when Saul Kripke and Hilary Putnam did so much to give sense and use to the idea of a natural kind” (p. 227). In my view the contemporary literature
NDVI is computed by Equation ( 1 ) and returns a value between −1 and 1 [ 29 ].
shafi2019-precision-agriculture-techniques-and-practices-from-considerations
normalized difference vegetation index
hu2021-aridity-biodiversity-soil-multifunctionality
Necessary conditions refer to features of the available workers, the health problem, and the intervention that will generally need to be in place to make a TS/S programme successful
orkin2021-task-shifting-task-sharing-framework
not defined in this paper's own words; conditions required for a mechanism to activate
lewis2018-classification-causality-implementation-mechanisms
Finally, there are two types of effect modifiers that are important to articulate, both of which can occur across multiple levels of analysis: moderators and preconditions. Moderators are factors that increase or decrease the level of influence of an implementation strategy on an outcome. See Figure 1 in which an example for intra-individual and organizational-level moderators for audit and feedba
not defined in this paper's own words; distribution produced by a Gamma mixture of Poisson variables
mcmurdie2014-rarefying-microbiome-data-inadmissible
Variation in the read counts of features between technical replicates have been adequately modeled by Poisson random variables [9] . However, we are usually interested in understanding the variation of features among biological replicates in order to make inferences that are relevant to the corresponding population; in which case a mixture model is necessary to account for the added uncertainty [1
not defined in this paper's own words; the count distribution with a mean and a dispersion, used because read counts are non-normal and their variance grows with the mean
love2014-deseq2
We model read counts K ij as following a negative binomial distribution (sometimes also called a gamma-Poisson distribution) with mean μ ij and dispersion α i .
a negative binomial distribution (sometimes also called a gamma-Poisson distribution)
love2014-deseq2
the Poisson distribution with random effects following a gamma distribution
yokoyama2020-seasonal-density-habitat-catchability
not defined in this paper's own words; emotions such as anxiety, boredom and burnout that narrow thinking
wang2021-positive-psychology-language-learning
In contrast to negative emotions, which spark the narrowed mindsets, positive emotions foster the broadened mindsets and discovery of creative and new ideas
not defined in this paper's own words; unpleasant feelings that go with low activity
zhang2025-physical-activity-health-literacy
Insufficient social support causes negative emotions and low levels of physical activity
The first mathematical model of a NN
lusch2018-deep-learning-for-universal-linear-embeddings
not defined in this paper's own words; early computational convolutional model
voulodimos2018-deep-learning-for-computer-vision
Convolutional Neural Networks (CNNs) were inspired by the visual system's structure, and in particular by the models of it proposed in \ [18\]. The first computational models based on these local connectivities between neurons and on hierarchically organized transformations of the image are found in Neocognitron \ [19\], which describes that when neurons with the same parameters are applied on pat
cognition itself read as a network phenomenon, organised by functional segregation and integration rather than by anatomy alone
sporns2005-human-connectome
A potential theoretical framework for conceptualizing cognition as a network phenomenon is based on two main organizational principles found in the cerebral cortex, functional segregation, and functional integration [ 6 , 7 ].
natural and technological networks generally, invoked as the class the brain belongs to and then partly excluded from
sporns2005-human-connectome
Compiling the connectome faces two significant challenges not shared by other natural or technological networks.
the brain's anatomical wiring, whose elements are neurons or regions and whose connections are pathways
sporns2005-human-connectome
the network of anatomical connections linking the neuronal elements of the human brain is still largely unknown
AS SUCH: what distinguishes being awake from asleep or dead, not tied to any content
Overgaard2017-the-status-and-future-of-consciousness-resea
Contrary to this, other scientists are preoccupied with finding neural correlates of consciousness “as such”—i.e., neural correlates that mark the difference between being dead, asleep, awake, etc., and which are not content-specific in the sense above.
Although it is rarely debated what we mean with a “neural correlate of consciousness,” most experiments aim to identify the minimal neural activations that are sufficient for a specific content of consciousness (Chalmers, 2000 )
Overgaard2017-the-status-and-future-of-consciousness-resea
not defined in this paper's own words in this sentence
karnakov2023-inverse-problems-discrete-loss
The advent of machine learning has reinvigorated the interest in solving inverse problems using neural networks (NNs).
not defined in this paper's own words; models that learn patient representations and prediction factors
rajkomar2018-scalable-accurate-deep-learning-electronic-health-records
Predictive modeling with electronic health record (EHR) data is anticipated to drive personalized medicine and improve healthcare quality. Constructing predictive statistical models typically requires extraction of curated predictor variables from normalized EHR data, a labor-intensive process that discards the vast majority of information in each patient’s record. We propose a representation of p
not defined in this paper's own words; one of the method families deep learning ENCOMPASSES, beside hierarchical probabilistic models and feature-learning algorithms
voulodimos2018-deep-learning-for-computer-vision
Deep learning is a rich family of methods, encompassing neural networks, hierarchical probabilistic models, and a variety of unsupervised and supervised feature learning algorithms.
study of neural correlates of aesthetic experience and beauty, especially in visual art
mastandrea2019-art-wellbeing-aesthetic-emotion
Neuroaesthetics is a relatively recent research field within cognitive neuroscience and refers to the study of neural correlates of aesthetic experience of beauty, particularly in visual art ( Chatterjee and Vartanian, 2016 ).
not defined in this paper's own words; neuroscientific study of aesthetic questions
conway2013-neuroaesthetics-trouble-beauty
The famous nineteenth-century psychophysicist Gustav Fechner was also a poet and art critic. Armed with the tools of science, Fechner sought to reconcile his various interests. He would doubtless be interested by technological developments in neuroscience that have revealed the operations of neurons at cellular resolution and have enabled us to peer almost unnoticed into each other's working brain
differences conceptualised as naturally occurring cognitive variation, akin to biodiversity, bringing unique strengths and challenges
hamilton2023-compassionate-pedagogy-neurodiversity
From a neurodiversity perspective, these differences in the way people perceive, learn about and interact with the world are conceptualised as naturally occurring cognitive variation, akin to biodiversity in the natural environment, which may bring unique strengths and challenges for individuals.
naturally occurring variation in the ways that humans perceive, experience and interact with the world
hamilton2023-compassionate-pedagogy-neurodiversity
a population of cells distinct from neurons in the central nervous system
kettenmann2025-neuroglia-concept-1900
as a mere space filler, Weigert's view, which may have held back later research
kettenmann2025-neuroglia-concept-1900
This may have inadvertently tempered enthusiasm for neuroglial research if that modest function was the most that could be said about these cells.
in Weigert's concept, a fibre structure holding free nuclei, not independent cells
kettenmann2025-neuroglia-concept-1900
According to his concept, the fiber structure constituted neuroglia.
normative freedoms and entitlements protecting a person's cerebral and mental domain
ienca2021-on-neurorights
Since the beginning of the current century, a fifth and complementary area of neuroethical and neurolegal enquiry has emerged, which has begun to look at ethical-legal challenges in neuroscience and neurotechnology in terms of high-level normative principles, such as rights, entitlements, and associated duties. This way of analyzing the ethical and legal implications of neuroscience has come to be
not defined in this paper's own words; rights protecting the cerebral and mental domain
ienca2021-on-neurorights
First of all, let us consider the very notion of “neurorights.” Neurorights can be defined as the ethical, legal, social or natural principles of freedom or entitlement relating to a person’s cerebral and mental domain; that is, the fundamental normative rules for the protection and preservation of the human brain and mind. Consequently, neuroright studies are a subfield of neuroethical and neurol
not defined in this paper's own words; rights governing cognitive liberty, mental privacy, mental integrity, and continuity
schleim2021-neurorights-history-brain-control
As already stated in the introduction, the four main neurorights are: (1) cognitive liberty; (2) mental privacy; (3) mental integrity; and (4) psychological continuity. The first, sometimes also called the right to mental self-determination, has two aspects: access to neurotechnologies and protection against their coercive and unconsented use; cognitive liberty is also considered the most fundamen
not defined in this paper's own words; granulocytes with context-dependent tumor roles
zhang2020-cancer-immunotherapy-tumor-infiltrating-immune-cells
Although neutrophils, the most common subtype of granulocytes, typically function in innate protection against bacterial and fungal infections, their roles in tumor immunity remain controversial. 151 Szczerba et al. showed that neutrophils escorted circulating tumor cells (CTCs) within the bloodstream and facilitated the metastatic potential of CTCs, 152 while Ponzetta et al. found that neutrophil
not defined in this paper's own words; the cells PMN-MDSC are phenotypically distinct from and cannot be separated from by surface markers alone
bronte2016-recommendations-for-myeloid-derive
Initially we and others used the term ‘granulocytic MDSC' to describe PMN-MDSC, but now we believe that the latter term better defines this MDSC subset, since PMN-MDSC are phenotypically distinct from steady-state neutrophils (having less granules, altered buoyancy, reduced CD16 and CD62L, and increased arginase 1, peroxynitrite, CD11b and CD66b)
1. The power elite: Stories concerning powerful individuals, organisations or institutions. 2. Celebrity: Stories concerning people who are already famous. 3. Entertainment: Stories concerning sex, showbusiness, human interest, animals, an unfolding drama, or offering opportunities for humorous treatment, entertaining photographs or witty headlines. 4. Surprise: Stories that have an element of surprise and/or contrast. 5. Bad news: Stories with particularly negative overtones, such as conflict or tragedy. 6. Good news: Stories with particularly positive overtones, such as rescues and cures. 7. Magnitude: Stories that are perceived as sufficiently significant either in the numbers of people involved or in potential impact. 8. Relevance: Stories about issues, groups and nations perceived to be relevant to the audience. 9. Follow-up: Stories about subjects already in the news. 10. Newspaper agenda: Stories that set or fit the news organisation’s own agenda (Harcup and O’Neill 2001, 278–279).
harcup2016-what-news
as the field defines them: a taxonomy of selection criteria identifiable in published output, offered as a tool rather than an explanation
harcup2016-what-news
Thus, we reiterate that the above news value taxonomy should be seen as a tool for analysis and further research—designed to provoke discussion and, indeed, contestation— not something to be churned out as if it is the last word on the subject. And, whenever the question arises of why a particular story is seen as newsworthy, there will always remain an element of truth to the reply: “It just is!”
not defined in this paper's own words; the criteria informing story selection - `a shared shorthand operational understanding of what working journalists are required to produce to deadlines`
harcup2016-what-news
News values are worth studying because they inform the mediated world that is presented to news audiences, providing a shared shorthand operational understanding of what working journalists are required to produce to deadlines. It is the way news values work in practice that results in them being articulated and conveyed to new journalism trainees and journalism students, and they are also used by
not defined in this paper's own words; high-throughput sequencing context
bolger2014-trimmomatic-flexible-trimmer
Motivation: Although many next-generation sequencing (NGS) read preprocessing tools already existed, we could not find any tool or combination of tools that met our requirements in terms of flexibility, correct handling of paired-end data and high performance. We have developed Trimmomatic as a more flexible and efficient preprocessing tool, which could correctly handle paired-end data.
not defined in this paper's own words; high-throughput sequencing used on enzyme-selected subsets
elshire2011-genotyping-by-sequencing-high-diversity-species
Although abundant diversity is a challenge to assays that rely on scoring fixed positions, it is advantageous to direct sequencing approaches because sequencing efficiency for genotyping scales directly with genetic diversity. We have developed a technically simple, highly multiplexed, genotyping-by-sequencing (GBS) approach that is suitable for population studies, germplasm characterization, bree
not defined in this paper's own words; sequencing method used in pathogen discovery
zhou2020-a-pneumonia-outbreak-associated-wi
One sample (WIV04), collected from the bronchoalveolar lavage fluid (BALF), was analysed by metagenomics analysis using next-generation sequencing to identify potential aetiological agents. Of the 10,038,758 total reads—of which 1,582 total reads were retained after filtering of reads from the human genome—1,378 (87.1%) sequences matched the sequence of SARSr-CoV (Fig. 1a ). By de novo assembly an
NF-κB is a family of inducible transcription factors that share homology in the Rel domain that has been implicated in the inflammatory response in renal disease 44 .
muto2021-single-cell-transcriptional-and-chromatin-accessibility-profiling
Nuclear factor-kappa B
zhang2020-gadd45b-multiple-myeloma-model
non-fungible token
zhang2022-metaverse-in-education-definition
not defined in this paper's own words; blockchain-based non-fungible tokens for digital art; the Contemporary dataset
epjds2023-compression-ensembles
The second dataset, denoted “Contemporary”, is mined from Hic et Nunc, a Tezos blockchain-based NFT art marketplace, representing the first 175 days of its existence (March to August 2021; 51640 artworks, 7284 artists). It contains 31% of all the objects added to the marketplace during our observation period. We only include static images (jpeg, png), as the currently presented approach does not y
Next Generation Sequencing
lagkouvardos2016-imngs-16s-rrna-profiles
not defined in this paper's own words; abbreviation for next-generation sequencing
bolger2014-trimmomatic-flexible-trimmer
Motivation: Although many next-generation sequencing (NGS) read preprocessing tools already existed, we could not find any tool or combination of tools that met our requirements in terms of flexibility, correct handling of paired-end data and high performance. We have developed Trimmomatic as a more flexible and efficient preprocessing tool, which could correctly handle paired-end data.
in a broader sense also covers perinecrotic sites, which hold stem cells but no endothelial cells
schiffer2018-glioblastoma-niche-concept
However, in a broader sense, the term niche also includes perinecrotic niches (PNNs) that do contain GSCs, but not ECs, the occurrence of which precedes necrosis development, being not a reactive phenomenon.
the sites where GSCs reside in the tumor and where the tumor microenvironment (TME) exerts its maximum influence
schiffer2018-glioblastoma-niche-concept
organism-induced changes in selection pressures in environments
kluiving2015-geoarchaeology-niche-construction
the dynamic elaboration of mutual ecologies
brown2014-anthropology-viral-hemorrhagic-fevers
heterotrophs reduce the nitrate anammox bacteria produce back to nitrite, which anammox bacteria use again
lawson2017-anammox-metabolic-network
Therefore, the ability of CHB1 to rapidly recycle nitrate back to nitrite may be critical for supporting anammox growth, which is required for their own proliferation.
not defined in this paper's own words; nitrate recycled back to nitrite for anammox bacteria
speth2016-anammox-full-scale-microbial-ecology
In the anaerobic community, widespread potential for partial denitrification suggests a nitrite loop increases treatment efficiency.
innate lymphoid cells with MHC-independent cytotoxicity
zhang2020-cancer-immunotherapy-tumor-infiltrating-immune-cells
NK cells are prototypical innate lymphoid cells that exert cytotoxic functions without MHC specificity, and thus complement the MHC-restricted tumor lysis mediated by cytotoxic T cells. 137 , 138 NK cells directly eradicate tumor cells through cytolytic granules and cooperate with other immune cells through proinflammatory cytokines and chemokines. 138 – 140 Importantly, the activation of NK cells
not defined in this paper's own words; innate cytotoxic lymphoid cells
zhang2020-cancer-immunotherapy-tumor-infiltrating-immune-cells
Cancer is a disease of the genome, and it is characterized by a genomic instability in which numerous point mutations accumulate and structural alterations occur in the process of tumor progression. 1 , 2 Such genomic variations could give rise to tumor antigens, which could be recognized by the immune system as nonself and elicit cellular immune responses. 3 , 4 The immune system plays an essenti
not defined in this paper's own words in this sentence
mackay2020-how-directed-is-a-directed-network
We consider directed networks (also known as directed graphs or digraphs) with set N of nodes (also known as vertices) and set E of directed edges (also known as links or ties).
not defined in this paper's own words; molecular-graph components corresponding to atoms
reiser2022-graph-neural-networks-materials-chemistry
The molecular structure is represented by an undirected graph, where nodes correspond to atoms and edges correspond to chemical bonds.
not defined in this paper's own words; membrane potential variability, which decides whether a given EPSP transmits at all
Spivak2022-deconvolution-improves-the-detection-and-qua
While even relatively-large EPSPs fail to produce postsynaptic spikes in the lack of membrane potential variability, weaker EPSPs (0.2–1 mV) could induce consistent spiking when noise was sufficiently high.
perceiving sound as noise is considered to be a result of the complex and dynamic process that includes sound, the environment, and humans
liu2022-definition-of-noise
not defined in this paper's own words; the rules for assigning and validating names
meier-kolthoff2022-tygs-and-lpsn-a-database-tandem-fo
Comments on taxonomic terminology were added to LPSN for single taxon names where appropriate, as well as comments about the conditions under which a name would be regarded as the correct name if it is not currently so regarded by LPSN. The latter change is supposed to improve the understanding of the difference between nomenclature and classification, which may puzzle many microbiologists ( 35 ).
not defined in this paper's own words; named as one of the four standing obstacles in this field, alongside separation, characterisation and functional studies - a naming problem listed beside three technical ones
welsh2024-minimal-information-for-studies-of
However, hurdles remain to realising the potential of EVs in domains ranging from basic biology to clinical applications due to challenges in EV nomenclature, separation from non‐vesicular extracellular particles, characterisation and functional studies.
not defined in this paper's own words; chronic non-infectious causes
ferrari2024-global-burden-371-diseases
Across the Level 1 causes, non-communicable diseases contributed the highest burden globally and was the only disease group for which DALYs increased between 2010 and 2021, from 1·47 billion (95% UI 1·32–1·64) in 2010 to 1·73 billion (1·54–1·94) in 2021 ( appendix 2 table S13 ). This increase was mostly due to population growth and ageing (165 of 204 countries increased in population between 2010
not defined in this paper's own words; chronic, non-infectious causes of burden
vos2020-global-burden-369-diseases
The change in disease burden in adolescents aged 10–24 years was much more modest ( figure 2 ). DALYs declined by 6·2% (95% UI 2·1–10·5) overall between 1990 and 2019. DALYs for non-communicable diseases increased by 13·1% (9·5–16·3), whereas injuries declined by 24·8% (19·7–29·3) and infectious diseases by 18·7% (13·4–24·0). Three injury causes were among the top ten causes of global DALYs in thi
not defined in this paper's own words; long-term illnesses that do not spread between people
cena2020-healthy-diet-definition
Non-communicable diseases (NCDs) such as cardiovascular disease, cancer, chronic respiratory diseases, diabetes, obesity, and cognitive impairment are among the leading causes of death and disability throughout the world, affecting populations in developed as well as developing countries [ 1 ].
not defined in this paper's own words; state lacking the ordinary experiential basis of a self-world boundary
milliere2018-psychedelics-meditation-self-consciousness
According to the first interpretation, they are conscious states in which both narrative and perhaps multisensory aspects of self-consciousness are radically disrupted, such the distinction between oneself and the external world no longer has an experiential basis.
recognition that the ordinary subject-object dichotomy is illusory
milliere2018-psychedelics-meditation-self-consciousness
Non-Dual Awareness (NDA) . In many contemplative traditions (including Advaita Vedanta and Kashmiri Shaivism within Hinduism, and Dzogchen and Mahāmudrā within Buddhism), the practice of meditation aims at recognizing the illusory nature of the subject-object dichotomy that allegedly structures ordinary conscious experience, thus revealing the “non-dual awareness” that lies at the background of co
individual responses to a mismatch between the patient's ideas and the professional's
laranjeira2023-therapeutic-adherence-mental-disorders
Nonadherence should be understood as individual responses to the lack of coincidence between their ideas and those of the HCP regarding their problems and/or treatments.
not defined in this paper's own words; patients not following their management plans
gallacher2013-treatment-burden-concept
Nonadherence to management strategies by patients with chronic disease is a global health problem [9] and has the potential to lead to negative outcomes for patients such as increased morbidity and wasted expenditure for health care systems [1] , [10] .
IC consist of several subregions that participate in different pathways 12 . Sensory information is relayed by the lemniscal or driver pathway and the nonlemniscal or modulator pathway in parallel 13 . Recently, the nonlemniscal pathway has gained widespread attention. Neurons in the nonlemniscal pathway are not only more broadly tuned and display stronger stimulus adaptation but also project to the non-sensory brain areas for innate behaviors 14 , 15 . In the auditory system, the lemniscal pathway includes the IC core (central IC (ICC)), ventral subregion of medial geniculate body (MGBv), and primary ACx, the nonlemniscal pathway includes the IC shell (dorsal and external IC (ICD and ICX, respectively)), dorsal and medial subregion of MGB (MGBd and MGBm, respectively), and non-primary ACx
Chen2019-differential-cell-type-dependent-brain-state
not defined in this paper's own words; the pathway the shell belongs to
Chen2019-differential-cell-type-dependent-brain-state
In the auditory system, the lemniscal pathway includes the IC core (central IC (ICC)), ventral subregion of medial geniculate body (MGBv), and primary ACx, the nonlemniscal pathway includes the IC shell (dorsal and external IC (ICD and ICX, respectively)), dorsal and medial subregion of MGB (MGBd and MGBm, respectively), and non-primary ACx 14 .
a model containing at least one anharmonic interaction, which in DNA comes from the weak hydrogen bonds
chevizovich2020-nonlinear-dna-physics-review
The models including at least one anharmonic interaction are called nonlinear.
not defined in this paper's own words; hidden-layer property allowing behavior beyond PCA
voulodimos2018-deep-learning-for-computer-vision
An autoencoder is trained to encode the input **x** into a representation **r**( **x**) in a way that input can be reconstructed from **r**( **x**) \ [33\]. The target output of the autoencoder is thus the autoencoder input itself. Hence, the output vectors have the same dimensionality as the input vector. In the course of this process, the reconstruction error is being minimized, and the correspo
not defined in this paper's own words; vibrational coordinate directions scaled to displace equilibrium geometries
smith2017-ani1-dataset-organic-molecules
Each R i is used to scale the normalized normal mode coordinates by q i R = R i q i .
not defined in this paper's own words; vibrational directions linearly combined for molecular displacement
hoja2021-qm7x-quantum-mechanical-properties
This was achieved by displacing each molecular structure along a linear combination of normal mode coordinates computed at the DFTB3+MBD level within the harmonic approximation (for consistency with the level of theory used to optimize the corresponding molecular structures).
Divisive normalization is a computational principle that acts upon neurons when presenting multiple stimuli simultaneously, it normalizes neuronal responses by creating ‘a ratio between the response of an individual neuron and the summed activity of a pool of neurons
Hahn2021-working-memory-capacity-of-crows-and-monkeys
not defined in this paper's own words; technical-effect removal and scale alignment
ritchie2015-limma-differential-expression
Before meaningful comparisons can be made between treatment conditions in a designed experiment, it is critical that the expression values are normalized so that all the samples are as far as possible on the same measurement scale. The purpose of normalization is to remove systematic effects due to technical differences between the assays unassociated with the biological differences of interest. D
a robust analytic framework for understanding the organisation and operationalisation of tasks or practices (their implementation)
gallacher2013-treatment-burden-concept
not defined in this paper's own words; a theory of embedding complex interventions through coherence, cognitive participation, collective action, and reflexive monitoring
nilsen2015-implementation-theories-models-frameworks
Another theory used in implementation science, the Normalization Process Theory [ 120 ], began life as a model, constructed on the basis of empirical studies of the implementation of new technologies [ 121 ]. The model was subsequently expanded upon and developed into a theory as change mechanisms and interrelations between various constructs were delineated [ 122 ]. The theory identifies four det
not defined in this paper's own words; orthogonal size validation for the MAN1A2 circle
salzman2012-circular-rnas-are-the-predominant
We used susceptibility to RNaseR as a biochemical assay for the topology of the RNA molecules containing scrambled exons. RNaseR is a 3′ to 5′ exoribonuclease that degrades essentially all linear RNA molecules, regardless of structure, provided the RNA contains a 7 bp 3′ overhang [23] . To optimize the efficiency of RNaseR digestion, HeLa RNA was first depleted of ribosomal RNA and then subjected
not defined in this paper's own words; spot-check of sequence-based abundance estimates
salzman2013-cell-type-specific-features-of-cir
As a spot-check of our sequencing based estimates of relative abundance of linear and circular isoforms, we performed a Northern blot for CAMSAP1 with total RNA from HeLa cells (see Figure 3 ). Sequencing based estimates suggested that the circular isoform of CAMSAP1 consisting of exons 2 and 3 was 20 times more abundant than the linear counterpart. The Northern blot shows that CAMSAP1 circular is
not defined in this paper's own words; intermittent signal of possible social reward
veissiere2018-hypernatural-monitoring-smartphone-addiction
As we have seen, smartphone use is at once constitutive of and constituted by a complex landscape of sociality. This landscape, however, is also modulated by notifications from dozens of applications that deliver beeps and buzzes, mostly to alert us that another human has interacted with us. We should now consider where and how ‘addiction’ fits in this picture. Social interaction (digital or not)
not defined in this paper's own words; novel repetitive cue that captures and renews attention
williams2020-struggle-human-attention
Surprise, novelty [ 10 ], and repetition [ 82 ] are typical behaviors of the notification system of social media [ 83 ]. Notifications are systematic impulses that saturate the attentional network due to the information overabundance they represent. This saturation produces a state of overalert in the individual. Thus, the notification acts as a digital stimulus [ 67 ] for the alerting system [ 84
not defined in this paper's own words; one criterion for an explanation insight
kung2023-chatgpt-usmle-medical-education
Having established the accuracy and concordance of ChatGPT, we next examined its potential to augment human learning in the domain of medical education. AI-generated explanations were independently adjudicated by 2 physician reviewers. Explanation content was examined for significant insights, defined as instances that met the criteria (see S2 Data ) of novelty , nonobviousness , and validity . Th
not defined in this paper's own words; salient information feature drawing selective attention
danaher2020-internet-cognitive-enhancement
Human attention is selective. In rich informational environments, attention will be drawn by the salient features of that environment, either as a function of the intrinsic qualities of that feature (for example, novelty), or as a function of the subject’s dispositions and attitudes (Taylor and Fiske 1978 , 253). As such, Vosoughi, Roy, and Aral hypothesize that misinformation is the salient infor
not defined in this paper's own words; the property said to drive hippocampal activity - alongside neurons driven by repetition
Billig2022-the-hearing-hippocampus
The novelty of both a word ( Davis et al., 2009 ) and its category ( Dolan and Fletcher, 1997 ) can drive hippocampal activity during memory encoding.
Although cognitive psychologists and math educators have different definitions of number sense ( Gersten et al., 2005 ), most of them agree that it is an ability to subitize small quantities, discern number patterns, compare numerical magnitudes, estimate quantities, count, and perform simple number transformations
Bao2020-neural-correlate-differences-in-number-sense
most of them agree that it is an ability to subitize small quantities, discern number patterns, compare numerical magnitudes, estimate quantities, count, and perform simple number transformations ( Berch, 2005 ). Having number sense leads a person from understanding the meaning of numbers to solving complex mathematical problems, from simple numerical comparisons to inventing procedures for performing numerical operations, and from identifying serious numerical errors to using quantitative methods to communicate, process, and explain the information
Bao2020-neural-correlate-differences-in-number-sense
a multidimensional concept manifested by the knowledge, attitudes, and behaviours that underlie successful clinical practice
cao2023-nursing-professionalism-concept
its meaning varies across time, contexts and cultures, so it is hard to define or measure
cao2023-nursing-professionalism-concept
Given that the meaning of professionalism varies across time, contexts, or cultures, it is difficult to define, quantify or measure professionalism [ 12 , 13 ].
not defined in this paper's own words; reproducible quantitative assessment needed for trials
bankhead2017-qupath-open-source-digital-pathology
The ability to acquire high resolution digital scans of entire microscopic slides with high-resolution whole slide scanners is transforming tissue biomarker and companion diagnostic discovery through digital image analytics, automation, quantitation and objective screening of tissue samples. This area has become widely known as digital pathology 1 , 2 . Whole slide scanners can rapidly generate ul
not defined in this paper's own words; same analysis applied across high-throughput image collections
mcquin2018-cellprofiler-next-generation-image
Reproducibility at scale: CellProfiler is designed to produce high-content information for each cell or other object of interest in each image and to apply the same objective analysis in high-throughput, e.g., across thousands or millions of images
First, participants’ occupation was categorized into four classes: front-line medical personnel (doctors, nurses and other medical personnel who had ever worked at the front-line against the epidemic), general medical personnel (doctors, nurses and other medical personnel who did not work at the front-line), employed (employees in other professions outside of medical area), unemployed (students and others who did not have any income).
hou2020-gender-differences-of-depression-and-anxiety-among
not defined in this paper's own words; participant-role covariate
gao2020-mental-health-problems-and-social
Covariates The following covariates were included in this study: gender, age (10-year categories), educational level (junior high school, senior high school, college and master and higher), marital status (recoded into married and other [including unmarried, divorced, and widowed]), self-rated health (categorized as excellent, very good and good or low), occupation(students/retired, health care wo
obsessive-compulsive disorder
lopezmunoz2019-alexithymia-concept-history
not defined in this paper's own words; obsessive-compulsive disorder; here either diagnosed or self-reported above an OCI-r threshold
Buot2023-improvement-in-ocd-symptoms-associated-with
In a sample of 174 participants, classic psychedelics were reported as the only substances effective at reducing OCD symptoms. In classic psychedelics users, symptoms reduction was associated with the intensity of acute effects, itself correlated to the dose.
ordinary differential equations
zhang2020-gadd45b-multiple-myeloma-model
ordinary differential equations (ODEs)
bosque2021-blood-flow-temperature-hyperthermia
casting a PDE's discretization as an optimization problem and solving it with machine-learning optimizers, keeping the grid method's accuracy and sparsity
karnakov2023-inverse-problems-discrete-loss
We introduce the ODIL framework for solving inverse problems for PDEs by casting their discretization as an optimization problem and applying optimization techniques that are widely available in machine-learning software.
optimizing a discrete loss
karnakov2023-inverse-problems-discrete-loss
not defined in this paper's own words; teaching delivered remotely, adopted here as an emergency substitute for face-to-face lectures
dhawan2020-online-learning-a-panacea-in-the-t
Objectives of the Study To explore the growth of EdTech Start-ups and online learning. To conduct an Strengths, Weaknesses, Opportunities, & Challenges (SWOC) analysis of online learning during the Corona Virus pandemic and natural disasters. To give some suggestions and recommendations for the success of online mode of learning during a crisis-like situation.
synchronous or asynchronous learning through internet-connected devices, independent of location
dhawan2020-online-learning-a-panacea-in-the-t
Online learning is defined as “learning experiences in synchronous or asynchronous environments using different devices (e.g., mobile phones, laptops, etc.) with internet access. In these environments, students can be anywhere (independent) to learn and interact with instructors and other students”
not defined in this paper's own words; rapid remote data-collection method
gao2020-mental-health-problems-and-social
Abstract. Huge citizens expose to social media during a novel coronavirus disease (COVID-19) outbroke in Wuhan, China. We assess the prevalence of mental health problems and examine their association with social media exposure. A cross-sectional study among Chinese citizens aged≥18 years old was conducted during Jan 31 to Feb 2, 2020. Online survey was used to do rapid assessment. Total of 4872 pa
not defined in this paper's own words; stakeholder consultation on item changes
page2021-prisma-systematic-review-reporting-guideline
A complete description of the methods used to develop PRISMA 2020 is available elsewhere. 35 We identified PRISMA 2009 items that were often reported incompletely by examining the results of studies investigating the transparency of reporting of published reviews. 17 21 36 37 We identified possible modifications to the PRISMA 2009 statement by reviewing 60 documents providing reporting guidance fo
a method for systematically assessing and registering the properties of concepts or constructs within a certain domain, as well as the interrelations between these phenomena ( Groß et al., 2016 ; Larsen and Bong, 2016 ; Larsen et al., 2017 )
stok2018-dietary-behavior-taxonomy
not defined in this paper's own words; formal structures of classes and relations, held here to be necessarily incomplete for cultural material
lod2023-art-history
Complex ontologies will never be completely exhaustive since no cultural artifact or experience could be fully and finally contextualized and vocabularies are not equally accurate and detailed for every subtopic.
output overlap coefficient
diem2024-firm-production-networks-predictability
share of total sales two firms sell to the same industries
diem2024-firm-production-networks-predictability
OOC i j specifies the fraction of total sales, i and j sell to the same industries.
not defined in this paper's own words; public accessibility of research data
munafo2017-manifesto-reproducible-science
Open science refers to the process of making the content and process of producing evidence and claims transparent and accessible to others. Transparency is a scientific ideal, and adding ‘open’ should therefore be redundant. In reality, science often lacks openness: many published articles are not available to people without a personal or institutional subscription, and most data, materials and co
not defined in this paper's own words; public sharing of research data through accessible repositories
munafò2016-open-science-researchers-succeed
Publicly share data and materials via a trusted repository .
not defined in this paper's own words; study data made available for scrutiny and reproduction
greenland2016-statistical-tests-p-values-confidence-intervals-power
Addressing such problems would require far more political will and effort than addressing misinterpretation of statistics, such as enforcing registration of trials, along with open data and analysis code from all completed studies (as in the AllTrials initiative, http://www.alltrials.net/ ). In the meantime, readers are advised to consider the entire context in which research reports are produced
not defined in this paper's own words
balasubramani2020-turbomole-quantum-chemistry-program
Compared to classical “open source” licenses, TURBOMOLE’s source code and end user licenses are more restrictive in that they do not allow free and anonymous download from a web repository.
not defined in this paper's own words; inspectable and modifiable governance condition for AI companions
danaher2020-internet-cognitive-enhancement
The companions we propose could offer not only more effective ways of accessing information, but they could also function as guides that caution users of the dangers encountered, be they security, privacy or attentional threats. A benefit of using AI companions to navigate the Internet would be the potential to protect or even enhance users’ autonomy, which is threatened by the power and informati
a continuum ranging from self-archiving to real-time sharing of protocols, proposals, and data
munafò2016-open-science-researchers-succeed
Openness can be thus defined by a continuum of practices, starting perhaps at the most basic level with openly self-archiving postprints and reaching perhaps the highest level with openly sharing grant proposals, research protocols, and data in real time.
not defined in this paper's own words
abdurahman2024-llms-psychological-research
For example, adding a study introduction when prompting ChatGPT to respond to the Big Five Inventory (BFI; ( 53 )), significantly reduced the scores for Openness
not defined in this paper's own words in this sentence
simchon2024-political-microtargeting-generative-ai
At the end of the survey, participants were requested to answer 12 items of the openness to experience personality factor, measured by BFI-2 ( 14 ) on a 1–5 Likert scale.
not defined in this paper's own words; a personality trait linked to appreciation of art, especially abstract art
humans-versus-ai-whether-and-why-we-prefer-human
Third, given that aesthetic appraisals are personal and subjective (Chatterjee, 2014 ; Roseman & Evdokas, 2004 ), also imperative in their investigation is consideration of individual differences that might reliably predict these judgements. In this vein, past work has considered the personality trait of openness to experience and its interactions with artwork and other creative outputs (Kaufman,
people high on it seek new experiences and self-examination
simchon2024-political-microtargeting-generative-ai
People high in Openness to Experience are motivated to seek new experiences and to engage in self-examination.
not defined in this paper's own words; the sequence cluster whose count gives microbial richness
hu2021-aridity-biodiversity-soil-multifunctionality
soil archaeal, bacterial, and fungal operational taxonomic unit (OTU) richness
`clusters of reads that differ by less than a fixed sequence dissimilarity threshold, most commonly 3%` - the definition is a threshold, and the paper's objection is that the threshold is arbitrary
callahan2017-exact-sequence-variants-should-rep
The analysis of marker-gene data customarily begins with the construction of molecular operational taxonomic units (OTUs): clusters of reads that differ by less than a fixed sequence dissimilarity threshold, most commonly 3% ( Westcott and Schloss, 2015 ; Kopylova et al. , 2016 ).
a non-invasive imaging technology that has the high speed required for 3D volumetric imaging
campbell2017-retina-vascular-anatomy-oct-angiography
not defined in this paper's own words; retinal OCT is called “an imaging biomarker for neurodegeneration in” MS
tewarie2012-oscar-ib-consensus-criteria
Retinal optical coherence tomography (OCT) is an imaging biomarker for neurodegeneration in multiple sclerosis (MS).
not defined in this paper's own words; the manipulation, chosen for being brief and selective
Natan2015-complementary-control-of-sensory-adaptation
For visualization, the baseline FR of neurons was removed and the peak response to a ‘deviant’ tone without optogenetic manipulation normalized to 1.
not defined in this paper's own words; light-driven activation or suppression of a targeted class, from which SOME INFERENCES CAN BE PROBLEMATIC
Yavorska2016-somatostatin-expressing-inhibitory-interneur
Divisive and subtractive inhibition A number of studies have examined the functional role of SOM neurons and their effect on both PNs as well as interneurons using optogenetic activation or suppression of SOM or PV cells (Atallah et al., 2012 ; Duguid et al., 2012 ; Lee et al., 2012 ; Wilson et al., 2012 ; Cottam et al., 2013 ; Seybold et al., 2015 ).
higher taxonomic rank
mora2011-how-many-species-earth-ocean
The diversity of life is one of the most striking aspects of our planet; hence knowing how many species inhabit Earth is among the most fundamental questions in science. Yet the answer to this question remains enigmatic, as efforts to sample the world's biodiversity to date have been limited and thus have precluded direct quantification of global species richness, and because indirect estimates re
not defined in this paper's own words; what is learnable without supervision
Pereira2020-unsupervised-learning-of-persistent-and-sequ
The cost of not having supervision is that the network can only learn the temporal order of the presented stimuli, but not their precise timing.
comprises a settings-based approach aiming at changing organizational conditions to enhance health literacy of relevant stakeholders
kirchhoff2022-organizational-health-literacy-schools
not defined in this paper's own words; health literacy treated as a property of a company rather than of its staff
ehmann2021-work-related-health-literacy-concept
As we consider work-related health literacy to be an individual competence, we excluded articles on organizational health literacy that conceptualized “health literacy” as a property of organizations and not of individuals.
not defined in this paper's own words; the direction of cardiomyocyte long axes
stephenson2017-cardiac-conduction-system-imaging
Individual cardiomyocytes are of the order of a few tens of microns in dimension, and the path and velocity of conduction is known to be dictated by their orientation
not defined in this paper's own words; the matched feature on the other side of the design - functional rather than sensory, and the one that costs priming for tools
Argiris2021-no-fruits-without-color-cross-modal-priming
As for the artificial category, reaction time data revealed a significant slowing of lexical-semantic processing when words representing tools were preceded by orientation-modified primes. This finding further confirms the differential importance of modality-specific information
genes as nodes and putative cognate pairs as weighted edges
emms2015-orthofinder-whole-genome-comparisons
An overview of the algorithm in shown in Fig. 7 , it proceeds in five phases corresponding to sections b-f in the figure: Fig. 7 Overview of the steps in the OrthoFinder algorithm for two example orthogroups of genes from three species. a The unknown orthogroups that the algorithm must recover, shown as a gene tree. b BLAST search of all genes against all genes. c Gene length and phylogenetic dist
not defined in this paper's own words; weighted graph of genes and cognate pairs
emms2015-orthofinder-whole-genome-comparisons
In brief, for each gene that had successfully identified one or more RBNHs, the scores for these RBNHs were used to delimit an inclusion threshold (see methods). As all scores are normalised for gene length and phylogenetic distance, hits to other genes (in any species) that had scores above this inclusion threshold were included as putative cognate gene-pairs and added to the orthogroup graph tha
not defined in this paper's own words; descent relation between genes across species
emms2015-orthofinder-whole-genome-comparisons
The most widely used methods for orthology inference can be classified into two distinct groups. One group of methods approaches the problem by inferring pairwise relationships between genes in two species, and then extending orthology to multiple species by identifying sets of genes spanning these species in which each gene-pair is an orthologue. Popular methods that adopt this approach include M
not defined in this paper's own words; evolutionary relationship used to transfer functional information
cantalapiedra2021-eggnog-mapper-v2-functional-annotation
Inference of gene function via orthology, rather than by homology detection, is generally considered the most reliable approach for transferring functional information between molecular sequences, as orthologs are expected to retain function more often than paralogs ( Gabaldón and Koonin 2013 ; Glover et al. 2019 ). However, since delineating orthology is highly demanding (both computationally and
not defined in this paper's own words; the evolutionary correspondence of genes across species used for transfer
szklarczyk2022-string-database
All protein–protein associations assembled for the STRING database are then transferred across organisms, where applicable, based on orthology relationships with the assumption that orthologs of associated proteins are likewise associated (‘interologs’, ( 50 )). For this, hierarchical orthology relationships, at various levels of taxonomic resolution, are imported from the eggNOG database ( 51 ).
HA in Osteoarthritis and in Cartilage Regeneration Osteoarthritis (OA) is a pathology that involves the entire joint compartment and is very widespread among the population of middle and senile age.
abatangelo2020-hyaluronic-acid-redefining-its-role
the most common musculoskeletal disorder in the world
tiulpin2018-knee-osteoarthritis-deep-learning
not defined in this paper's own words; microbiome feature represented by a sequence-read count
mcmurdie2014-rarefying-microbiome-data-inadmissible
Modern, massively parallel DNA sequencing technologies have changed the scope and technique of investigations across many fields of biology [1] , [2] . In gene expression studies the standard measurement technique has shifted away from microarray hybridization to direct sequencing of cDNA, a technique often referred to as RNA-Seq [3] . Analogously, culture independent [4] microbiome research has m
operational taxonomic unit
hu2021-aridity-biodiversity-soil-multifunctionality
not defined in this paper's own words; model skill on held-out data
ferrari2024-global-burden-371-diseases
GBD estimates of health and health loss evolve across cycles because of the addition of new data, important improvements made to the burden estimation pipeline, and instability in datasets and processes, which we try to minimise wherever possible. Inconsistencies in the availability of primary epidemiological data remain a limitation and source of instability within GBD analyses. Our estimates dep
not defined in this paper's own words; model skill on held-out data, on which data-poor estimates rest
vos2020-global-burden-369-diseases
The major limitation of the GBD analysis of the burden of diseases and injuries is the availability of primary data. Where data are not available, the results depend on the out-of-sample predictive validity of the modelling efforts. While improvements to data processing and modelling can lead to incremental improvements in the accuracy of our estimates, fundamental improvements require more and be
the number of ties a participant reports in a network
elmer2020-students-under-lockdown-comparisons-of-students-social
For each type of network captured by these items, we construct two key measures to test Hypotheses 1a and 1b: the outdegree of each respondent, i.e. the number of ties that each participant reports in each network, and the proportion of out-isolates , i.e. the fraction of all participants who reported no ties in a network.
the number of connections pointing from the focal symptom to other symptoms
fried2016-mental-disorders-networks-review
not defined in this paper's own words; extreme core score that robust aggregation seeks not to privilege
bankhead2017-qupath-open-source-digital-pathology
Survival curves using the Kaplan Meier method were generated and log-rank tests applied using the TMA data viewer within QuPath, and independently verified using R (version 3.2.2) 30 with the ‘Survival’ package (version 2.38–3) 31 . For the calculation of disease-specific survival, deaths from other causes were treated as censored events. Median cutoff values were used in all cases, except for p53
not defined in this paper's own words; CPD class outside the expected protein-count distribution
bateman2020-uniprot-the-universal-protein-know
UniProt proteomes provide the set of proteins currently believed to be expressed by an organism. Previously, this dataset only consisted of complete proteomes derived from fully sequenced genomes. This has now been updated to enable the user to access a wider set of proteomes with different quality and completeness metrics. To enable researchers to evaluate proteome completeness and expected gene
not defined in this paper's own words; a model fitting noise so it transfers badly to new conditions
thuiller2019-uncertainty-global-biodiversity-scenarios
Some of the particular combinations of features could represent true complex interactions between species’ occurrences and environmental conditions, but sometimes they could result of over-fitting and spurious combinations, that once projected in new conditions lead to misleading results.
used here as a HYPOTHESIS THE PAPER TESTS AND REJECTS, not as a limitation it concedes: the train/test ratio is varied to 20-80 and the losses are checked for divergence
mohanty2016-using-deep-learning-for-image-base
Figure 3C also shows that there is no divergence between the validation loss and the training loss, confirming that over-fitting is not a contributor to the results we obtain across all our experiments.
a directed weighted graph with firms as nodes and ownership ties as links
vitali2011-network-global-corporate-control
Ownership refers to a person or a firm owning another firm entirely or partially. Let denote the ownership matrix, where the component is the percentage of ownership that the owner (or shareholder ) holds in firm . This corresponds to a directed weighted graph with firms represented as nodes and ownership ties as links. If, in turn, firm owns shares of firm , then firm has an indirect ownership of
not defined in this paper's own words; directed weighted network of firms and shareholding ties
vitali2011-network-global-corporate-control
A common intuition among scholars and in the media sees the global economy as being dominated by a handful of powerful transnational corporations (TNCs). However, this has not been confirmed or rejected with explicit numbers. A quantitative investigation is not a trivial task because firms may exert control over other firms via a web of direct and indirect ownership relations which extends over ma
not defined in this paper's own words; single-anion oxide compounds
kageyama2018-multiple-anion-materials
Unlike oxides, which exhibit diverse chemistries and structures often known from mineralogy, the structures of most mixed-anion compounds, among other aspects, are less explored with much to learn.
not defined in this paper's own words; the mixed metal oxides the paper studies
rost2015-entropy-stabilized-oxides
Compared with metallic alloys, the pronounced impact of entropy in oxides may be surprising given that on a per-atom basis the total disorder per volume of an oxide seems be lower than in a high-entropy alloy, as the anion sublattice is ordered (apart from point defects).
not defined in this paper's own words; the anodic half-reaction of water splitting
hao2022-electronegativity-high-entropy-alloy-electrocatalysts
The HER, oxygen evolution reaction (OER) and overall water splitting (OWS) reaction were performed in Ar-saturated 1.0 M KOH electrolyte, and all potentials were calibrated with a reversible hydrogen electrode (RHE).
not defined in this paper's own words; the reverse of oxygen reduction, releasing O2
ling2016-cobalt-oxide-nanorods-electrocatalysis
which results in rapid charge transfer and favourable energetics for both oxygen reduction reaction (ORR) and oxygen evolution reaction (OER) as evidenced by excellent activity and durability of CoO NRs towards both reactions.
not defined in this paper's own words; its abbreviation, and a fragment inside six other words
Pereira2020-unsupervised-learning-of-persistent-and-sequ
Black circles (SA), plus signs (PA), hexagons (dSA), and squares (PA/SA) show the simulated dynamics.
physical activity
rich2013-accelerometer-minimum-wear-time
prognostic awareness
kuhne2021-prognostic-awareness
not defined in this paper's own words; predicted alignment error, used across chains for complexes
mirdita2022-colabfold
For hetero-oligomeric complexes (Supplementary Fig. 4b ), a separate MSA is generated for each component. The MSA is paired according to the chosen pair_mode (section 2.4.2 ). Given that pLDDT is useful only for assessing local structure confidence, we use the fine-tuned model parameters to return the PAE for each prediction. As illustrated in Supplementary Fig. 4c , the inter-PAE, the predicted T
not defined in this paper's own words; short name for Predicted Aligned Error
varadi2021-alphafold-protein-structure-database
The Predicted Aligned Error (PAE) is another output of the AlphaFold system. It indicates the expected positional error at residue x if the predicted and actual structures are aligned on residue y (using the Cα, N and C atoms). PAEs are measured in Ångströms and capped at 31.75 Å. Scientists can use these values to assess the confidence in the relative position and orientation of different parts o
forward and reverse reads retaining their shared-fragment positional relationship
bolger2014-trimmomatic-flexible-trimmer
The preprocessing approach must also not interfere with the downstream analysis of the data. For example, NGS data often come in the form of paired-end reads, and typically, the forward and reverse reads are stored in two separate FASTQ files, which contain reads from each DNA fragment in the same order. Many downstream tools use this positional relationship between pairs, so it must be maintained
not defined in this paper's own words; forward/reverse sequence pairs to merge
rognese2016-vsearch-metagenomics
Merging of paired-end reads is supported by VSEARCH using the fastq_mergepairs command. The method used has some similarity to PEAR ( Zhang et al., 2014 ) and recognises options similar to USEARCH. The algorithm computes the optimal ungapped alignment of the overlapping region of the forward sequence and the reverse-complemented reverse sequence. The alignment requires a minimum overlap length (sp
not defined in this paper's own words; AF3's main trunk block on pair and single representations
abramson2024-alphafold3
This is achieved by a substantial evolution of the AF2 architecture and training procedure (Fig. 1d ) both to accommodate more general chemical structures and to improve the data efficiency of learning. The system reduces the amount of multiple-sequence alignment (MSA) processing by replacing the AF2 evoformer with the simpler pairformer module (Fig. 2a ). Furthermore it directly predicts the raw
the dominant processing block of AF3, operating only on the pair and single representations, with no retained MSA representation
abramson2024-alphafold3
The overall structure of AF3 (Fig. 1d and Supplementary Methods 3 ) echoes that of AF2, with a large trunk evolving a pairwise representation of the chemical complex followed by a structure module that uses the pairwise representation to generate explicit atomic positions, but there are large differences in each major component. These modifications were driven both by the need to accommodate a wid
not defined in this paper's own words; paired adapter-read-through detection mode
bolger2014-trimmomatic-flexible-trimmer
The second mode, referred to as ‘palindrome mode’, is specifically aimed at detecting this common ‘adapter read-through’ scenario, whereby the sequenced DNA fragment is shorter than the read length, and results in adapter contamination on the end of the reads. This is especially the case for longer read length as supported by the Miseq. Although such short fragments should normally be removed duri
paired-end adapter-read-through detection using reverse-complement and adapter signals
bolger2014-trimmomatic-flexible-trimmer
As noted above, ‘palindrome mode’ is specifically optimized for the detection of ‘adapter read-through’. When ‘read-through’ occurs, both reads in a pair will consist of an equal number of valid bases, followed by contaminating sequence from the ‘opposite’ adapters. Furthermore, the valid sequence within the two reads will be reverse complements. By detecting all three of these symptoms at once, a
polyaniline
feig2018-conductive-interpenetrating-network-hydrogels
polyaniline intercalated into manganese-dioxide nanolayers
huang2018-polyaniline-intercalated-manganese-dioxide-nanolayers-as-a
Here we prepare the polyaniline (PANI)-intercalated MnO 2 nanolayers through an interface reaction.
for Galton and Pearson, random mating with respect to one trait only
walton2025-panmictic-population-concept
Specifically, they seemed to argue that a population would mate randomly with respect to a trait if preferential mating for that trait was absent.
for Weismann, the suspension of natural selection that lets an organ degenerate
walton2025-panmictic-population-concept
Instead, he writes, the ‘suspension of the preserving influence of natural selection [which] may be termed panmixia’ (Weismann 1883 ).
the individuals in a given population breed with each other randomly with respect to geography, relatedness, physical appearance and sex ratios
walton2025-panmictic-population-concept
not defined in this paper's own words; future path for scaling range computations
lawrence2013-genomic-ranges-software
All of the packages described, including IRanges , GenomicRanges and GenomicFeatures , form the core infrastructure for sequence analysis in Bioconductor and are available from the project website: http://bioconductor.org (see also Software S1 - S3 ). We aim to continue to support scientists in their drive to further science by asking increasingly complex and integrative questions about increasing
not defined in this paper's own words; multiprocess calculation of descriptors
moriwaki2018-mordred-molecular-descriptor-calculator
The Calculator class manages the dependencies of Descriptors, caches the results, handles errors, and enables parallel computing. Users can register the Descriptor instance (register itself), Descriptor class (preset of Descriptor), module (presets of all descriptors in the module), or a list of these in a Calculator instance. To calculate descriptors of a single molecule, an instance of Calculato
The 'odds' parameter is defined as the relative probability of genes within a category to the genes outside the category.
young2010-gene-ontology-analysis-for-rna-seq-accounting
not defined in this paper's own words; the kind of thing the paper says the NLR is - `a simple parameter to assess easily the inflammatory status of a subject`
forget2017-what-is-the-normal-value-of-the-ne
Neutrophil-to-lymphocyte ratio (NLR) is a simple parameter to assess easily the inflammatory status of a subject.
meaningful coordination in an autonomous relation that regulates but does not erase participant agencies
di-paolo2020-pregnant-agencies
When fetus and mother step into new engagements, they enter into a new kind of relation. This emergent relation acquires a level of autonomy, and regulates their agencies, but without over-determining their autonomy. This is in line with the definition of social interaction given by De Jaegher and Di Paolo (2007) , on which the enactive theory of intersubjectivity as participatory sense-making is
not defined in this paper's own words; co-regulated meaning and agency between agents
popova2020-enactivism-ecological-psychology-agency
Another important distinction in the enactivist understanding of agency is interactional asymmetry . This notion describes the fact that organisms do things, they explore and perform with some regularity, and do not merely react to the world. “[F]or agency it is not sufficient for an individual system to just be a moving system, nor to merely be in interaction with the environment or other systems
not defined in this paper's own words; a relationship between provider and receiver that carries information and shared decisions
byrne2020-person-centred-care-nursing-definition
The literature discusses the need for a relationship between healthcare provider and healthcare receiver as a way of facilitating information, knowledge and decision making
relationship between individuals or groups that is characterized by mutual cooperation and responsibility, as for the achievement of a specified goal
jang2020-staff-family-partnership-long-term-care
its 15 dimensions are interrelated rather than independent
scholl2014-patient-centeredness-concept
The above described 15 dimensions of patient-centeredness found in the literature can be seen as interrelated rather than being independent from one another.
not defined in this paper's own words; a concept the literature describes as fuzzy, elusive, or poorly conceptualized, analysed here into 15 dimensions
scholl2014-patient-centeredness-concept
However, the literature draws a different picture, describing the concept as fuzzy [21] , elusive [22] , or even as a “poorly conceptualized phenomenon” [23] .
Another aspect of patient-centered care highlighted in the literature is patient empowerment, by acknowledging the patient's perceived ability to self-manage important aspects of his or her illness, activating and encouraging the patient to take responsibility to solve health related problems and to take actions to improve his or her health and becoming an expert regarding the management of his or her health condition.
scholl2014-patient-centeredness-concept
a patient’s proliferation of knowledge, skills, attitudes, or self-awareness, combined with the confidence to participate in their care
hickmann2022-patient-engagement-empowerment-terms
Coinhibitory receptors including programmed cell death 1 (PDCD1, also known as PD-1) are major (but not the sole) players in this setting.
galluzzi2020-consensus-guidelines-for-the-definition-detection-and
not defined in this paper's own words; inhibitory receptor on T cells
zhang2020-cancer-immunotherapy-tumor-infiltrating-immune-cells
CTLA-4 is a coinhibitory molecule expressed on T cells and functions to negatively regulate T-cell activation. 76 , 77 One pioneering study demonstrated that blocking CTLA-4 with antibodies could induce effective immune responses and lead to tumor regression, 78 opening the era of utilizing antibodies to release the brakes of immune cells to reinforce antitumor immune responses. 78 , 79 After clin
partial equilibrium
ge2021-agent-based-global-food-trade
polyethylene
pabortsava2020-atlantic-subsurface-plastic
not defined in this paper's own words; coefficient operationalizing age correlation
horvath2013-dna-methylation-age-human-tissues
I considered several measures of predictive accuracy since each measure has distinct advantages. The first, referred to as 'age correlation’, is the Pearson correlation coefficient between DNAm age (predicted age) and chronological age. It has the following limitations: it cannot be used for studying whether DNAm is well calibrated, it cannot be calculated in data sets whose subjects have the same
not defined in this paper's own words; the correlation measure degraded by sparse redundant data
szklarczyk2022-string-database
The expression data tends to be sparse, high-dimensional and highly redundant. These attributes decrease the performance of correlations using Pearson Correlation Coefficient. For previous versions of STRING we have reduced the redundancy by removing highly correlated expression matrices before correlating the gene expression which, in turn, increased the recovery of the functional associations de
poly(3,4-ethylenedioxythiophene) polystyrene sulfonate
feig2018-conductive-interpenetrating-network-hydrogels
a commercially available conductive polymer composite with good solution processability, tunable electrical property, and biocompatibility
tan2022-conductive-polymer-composites-soft-electronics
not defined in this paper's own words; editorial assessment divided into stages before and after results
munafo2017-manifesto-reproducible-science
The Registered Reports (RR) initiative seeks to eliminate various forms of bias in hypothesis-driven research 52 , 53 , and in particular, the evaluation of a study based on the results. Unlike conventional journal articles, RRs split the peer review process into two stages, before and after results are known. At the first stage, reviewers and editors assess a detailed protocol that includes the s
not defined in this paper's own words; scientific scrutiny requiring complete methods and key results
kilkenny2010-arrive-guidelines-reporting-animal-research
Scrutiny by scientific peers has long been the mainstay of “quality control” for the publication process. The way that experiments are reported, in terms of the level of detail of methods and the presentation of key results, is crucial to the peer review process and, indeed, the subsequent utility and validity of the knowledge base that is used to inform future research. The onus is therefore on t
not defined in this paper's own words; human interpreters of Darwin Core semantics
wieczorek2012-darwin-core-evolving-community-biodiversity-data-standard
Fundamentally, Darwin Core is a set of terms having clearly defined semantics that can be understood by people or interpreted by machines, making it possible to determine appropriate uses of the data encoded therein. The terms are organized into nine categories (often referred to as “classes”, Figure 2 ), six of which cover broad aspects (event, location, geological context, occurrence, taxon, and
not defined in this paper's own words; the word early definitions used for those who interact
aichner2021-social-media-definitions
In early definitions, the focus was mainly on people and how people interact
an individual’s assessment and interpretation of their ability to handle stress effectively
feyzbabaie2025-psychological-distress-nursing-students
not defined in this paper's own words; the stress a student experiences during study
aryuwat2022-resilience-nursing-students-review
Perceived stress was another factor shown to be affected by resilience among nursing students during their nursing education
not defined in this paper's own words; how effective preservice teachers judge a theory to be
attwood2022-multiple-intelligences-semantics
This second reason reinforces the first because preservice teachers’ perception of the effectiveness of learning styles and related theories, especially MI theory, tends to be influenced by anecdotal experience ( Menz et al., 2021 ).
skilled bodily exploration of marks
malafouris2021-mark-making-human-becoming
The approach I propose in this paper shares Hodgson’s emphasis on indexicality and aesthetics. However, it is grounded on a different enactive conceptualisation of human perception and action. According to the Neurovisual Resonance Theory the markings may facilitate and scaffold the embodied attunement of perception. Still, they operate as ‘external’ stimuli affecting the organism from the ‘outsid
the interpretation of something created by people through their knowledge, experiences, attitudes and beliefs
duan2024-public-image-of-nursing
not defined in this paper's own words; remission sample from the same ALL patients
salzman2012-circular-rnas-are-the-predominant
We began with the hypothesis that scrambled exons would generally be a sign of local genomic rearrangements in cancer. To our surprise, all examples of exon scrambling that we PCR-verified in leukemia samples were also detectable in HeLa cells and normal primary human cells, including peripheral blood collected from the same ALL patients in remission and H9 ES Cells. These results strongly suggest
not defined in this paper's own words; source compartment for fresh immune cells
zhang2020-cancer-immunotherapy-tumor-infiltrating-immune-cells
T cells in the peripheral blood can migrate and infiltrate into tumors to replenish the effector pool; thus, human peripheral blood mononuclear cells are also intensely investigated for their changes before and after ICI treatments. Wu et al. performed single-cell sequencing of the RNA and TCRs of individual T cells in patients with different cancer types and uncovered that the clonal expansion of
not defined in this paper's own words; how well a person's traits suit the social setting they live in
hull2017-social-camouflaging-autism
A better person-environment fit is the key, and this involves ‘treating the environment’ to reduce stigmatization attached to autism and barriers to social life (Lai and Baron-Cohen 2015 ).
not defined in this paper's own words; the match between a person and their surroundings that adaptation depends on
menassa2023-healthy-ageing-concepts-definitions
The person-environment fit, also referred to as congruence or mastery, is an explicit contextual factor of adaptation that depends on life-acquired resourcefulness, resilience, and proactivity
Moreover, the increased use of personal protective equipment (PPE) (e.g., face mask, hand gloves, gowns, goggles, face shield etc.), and their haphazard disposal creates environmental burden ( Fadare and Okoffo, 2020 ; Nghiem et al., 2020 ; Singh et al., 2020 ).
rume2020-environmental-effects-of-covid-19-pandemic-and
not defined in this paper's own words; protective clothing and gear worn in COVID-19 care
azizi2023-helplessness-nurses-covid
During the COVID‐19 pandemic, disease knowledge, intervention deficit, wearing personal protective equipment (PPE)
cognitive, psychological, time, and material resources
adams2016-population-interventions-agency
protective characteristics that buffer against stress, such as resiliency
fink2022-nurses-in-conflicts
not defined in this paper's own words; psychometric characteristic inferred from language
schwartz2013-personality-language-social-media
These past studies, mostly within the field of computer science or specifically computational linguistics, have focused on prediction for tasks such as content personalization or authorship attribution. In our work, predictive models of personality, gender, and age provide a quantitative means to compare various open-vocabulary sets of features with a closed-vocabulary set. Our primary concern is
not defined in this paper's own words; individual dispositions entering the prediction of situated behavior
smith2019-cultures-persons-individual-variability
Concerning situations, Lewin (1936) proposed the general formula, Behavior = f (Personality.Situation), i.e., B = f (P.S), for integrating personality factors with situational features in predicting an individual’s behavior. Norms exercise their force upon an individual’s situated behavior by suggesting or specifying the reinforcement contingencies likely to be applied should the individual behave
traits and characteristics that make an individual unique
schwartz2013-personality-language-social-media
not defined in this paper's own words; care tailored with patient-specific prediction
rajkomar2018-scalable-accurate-deep-learning-electronic-health-records
Predictive modeling with electronic health record (EHR) data is anticipated to drive personalized medicine and improve healthcare quality. Constructing predictive statistical models typically requires extraction of curated predictor variables from normalized EHR data, a labor-intensive process that discards the vast majority of information in each patient’s record. We propose a representation of p
not defined in this paper's own words; tailored medical treatment informed by host-microbiome variation
berg2020-microbiome-definition-re-visited-o
The increasing availability of microbiome data driven by advances in -omics technologies has led to dramatic increases in our understanding of the potential for microbiomes to enhance productivity and sustainability of diverse systems [ 6 , 179 , 180 ]. The grand vision of applied microbiome research is to improve health of humans, animals, plants, and whole ecosystems. In general, microbiomes can
PET (Positron emission tomography) is a nuclear imaging technique that produces a 3D image or picture of a functional process.
li2014-a-review-of-imaging-techniques-for-plant
polyethylene terephthalate
ross2021-polyester-fibres-arctic-ocean
not defined in this paper's own words; its acronym, which is itself part of the problem
Laubach2018-what-if-anything-is-rodent-prefrontal-cortex
For neuroscientists studying humans and nonhuman primates, prefrontal cortex (PFC) typically means the granular and orbital parts of the frontal cortex.
not defined in this paper's own words; prefrontal cortex; here prelimbic, infralimbic, cingulate and medial orbital
Murray2015-parvalbumin-positive-interneurons-of-the-pre
Compared with controls, PFC-Lesion animals showed significantly higher levels of locomotor activity ( Fig. 6F ), with increased peak activity ( p = 0.04; t = 1.97) and slower decay kinetics ( p = 0.005; t = 3.25), confirming the importance of the PFC for amphetamine sensitivity.
not defined in this paper's own words; the region where repetition suppression tracks the stimulus-response association - and the half of the dissociation that supports the response-learning account
horner-henson2008-response-learning
The present study therefore suggests a dissociation between RS within the PFC, which may be sensitive to retrieval of stimulus–response associations
a perfluorinated compound (PFC) that does not occur naturally
steenland2010-pfoa-health-effects
perfluorooctanoate (PFOA)
fei2007-perfluorinated-chemicals-fetal-growth
not defined in this paper's own words; the acidity of the colon contents
davanidavari2019-prebiotics-definition
SCFAs decrease the pH of colon [ 14 , 15 ].
not defined in this paper's own words; the solution pH, a factor on removal
tao2020-cellulose-nanocrystal-graphene-oxide-adsorption
As the pH increases, the negative charge content on the surface of the adsorbent increases, decreasing its electrostatic attractions with the antibiotic molecules and decreasing the removal rate.
natural predators of bacteria
destoumieuxgarzon2018-one-health-concept
not defined in this paper's own words; mobile genetic elements included in microbiome but excluded from microbiota
berg2020-microbiome-definition-re-visited-o
The microbiota comprises all living members forming the microbiome. Etymology and differences of both terms are explained in Table 2 . Bacteria, archaea, fungi, algae, and small protists should be considered as members of the microbiome [ 25 ]; most microbiome researchers agree with this definition. The integration of phages, viruses, plasmids, and mobile genetic elements is one of the most contro
There is a systematic change in the phase of theta oscillations at which a place cell fires as the animal moves through its firing field (“phase precession”; O’Keefe and Recce, 1993 in rodents; Qasim et al., 2021 in humans).
Billig2022-the-hearing-hippocampus
Theta phase precession. The time at which a cell fires relative to the ongoing theta cycle (“phase”) decreases as the animal moves through space. Thus, the cell initially fires at the end of a theta cycle, then slightly before the end of the next cycle, until it eventually fires its last spikes near the beginning of the ongoing theta cycle. This phenomenon is called “phase precession.” Initially described in place cells, phase precession has also been reported in other hippocampal cells, including interneurons, “episode,” and sound-responsive cells (in which case the movement is considered in a more abstract space), as well as in other brain structures such as the medial prefrontal cortex or the ventral striatum.
Drieu2019-hippocampal-sequences-during-exploration-mec
not defined in this paper's own words; the single-cell phenomenon, cause or consequence unresolved
Drieu2019-hippocampal-sequences-during-exploration-mec
Mechanisms of Theta Sequences Whether phase precession is a cause or a consequence of the formation of theta sequences remains unresolved.
not defined in this paper's own words; raw subjective awareness distinguished from cognition and metacognition
wahbeh2022-what-if-consciousness-is-not-an-emergent-pro
Bernardo Kastrup proposes “analytic idealism” as a model for reality, in which the ground of existence is universal phenomenal consciousness ( Kastrup, 2021 ). Analytic idealism is a metaphysics that postulates consciousness as Nature’s sole fundamental ground and that all natural phenomena are ultimately reducible to universal consciousness. He describes phenomenal consciousness as a raw subjecti
not defined in this paper's own words; the subjective feeling of what it is like to have an experience
farisco2018-large-scale-brain-simulation-and-disorders-o
Whether access and phenomenal consciousness are really two different forms of consciousness or rather two different aspects of the same underlying conscious activity continues to be debated ( Pennartz, 2015 ). Still, it is commonly agreed that while access consciousness refers to the interaction between different states, particularly the availability of one state’s content for use in reasoning and
not defined in this paper's own words; the thing that must stay stable under the null
Sloin2022-hybrid-offspring-of-c57bl-6j-mice-exhibit-im
A second challenge is to ensure the stability of the tested phenotype under the null condition throughout the study period.
not defined in this paper's own words; word used for both a feature and an individual's full set of features
kohler2020-the-human-phenotype-ontology-in-2021
The community uses the word phenotype with multiple meanings. The HPO defines a disease as an entity that has all four of the following attributes: an etiology (whether identified or as yet unknown) a time course a set of phenotypic features if treatments exist, there is a characteristic response to them A phenotype phenotypic feature is a part of a disease. The phenotype of an individual with a d
not defined in this paper's own words; direct developmental influence of environment on individual phenotype
chevin2010-adaptation-plasticity-extinction-changing-environment
phenotypic plasticity: direct influence of the environment on individual phenotypes through developmental mechanisms. For a linear norm of reaction plasticity is measured by the slope b
the expression of multiple phenotypes from one genome
oostra2018-phenotypic-plasticity-climate-change
not defined in this paper's own words; causal distinctions and binding relations
albantakis2023-integrated-information-theory-4-consciousness
In conclusion, a maximal substrate or complex is a set of units S * = s * that satisfies all of IIT’s postulates: its cause–effect power is intrinsic, specific, irreducible, definite, and structured. By IIT, a complex S * does not exist as such, but exists “unfolded” into its Φ -structure, with all the causal distinctions and relations that compose it. In other words, a substrate is what can be ob
the distinctions and relations unfolded from a maximal substrate
albantakis2023-integrated-information-theory-4-consciousness
The cause–effect structure specified by a maximal substrate—a complex—is also called a Φ -structure:
not defined in this paper's own words; sound-form component capable of direct affective activation
stephens2011-swearing-euphemisms-linguistic-relativity
In Figure 1b , by contrast, word phonology can influence affect directly (unmediated by semantics) via verbal conditioning, with the semantic content of a word and its form jointly determining our emotional response. Accordingly, even if a euphemism and its offensive counterpart are close synonyms (or semantically equivalent), the two words will have different emotional impact due to the differenc
not defined in this paper's own words; sound-form information
nieuwland2018-limit-probabilistic-prediction
Our findings thus challenge one empirical cornerstone of the ‘strong prediction view’ held by current theories of language comprehension (e.g. Altmann and Mirković, 2009 ; Pickering and Garrod, 2013 ). The strong prediction view entails two key claims. The first is that people pre-activate words at all levels of representation in a routine and implicit (i.e. non-strategic) fashion. Pre-activation
not defined in this paper's own words; emission from the triplet state
kaji2015-purely-organic-electroluminescent-material
Phosphorescence and delayed fluorescence are easily distinguished from the temperature dependence of the transient PL decay.
not defined in this paper's own words; light re-emitted by the excited photocatalyst, a non-productive relaxation pathway
cismesia2015-photoredox-chain-processes
This is the maximum value for this scenario: the occurrence of any non-productive photochemical processes such as phosphorescence, internal conversion, or back electron transfer would only decrease the observed quantum yield.
evolutionary history represented by phylogenetic branching patterns and branch lengths
isaac2007-mammals-edge-conservation-priorities-threat-phylogeny
There are several reasons why PD has not gained wider acceptance in the conservation community. First, although evolutionary history consists of two distinct components (the branching pattern of a phylogenetic tree and the length of its branches), complete dated species-level phylogenies for large taxonomic groups have only recently become available [26] . Early implementations of PD-based approac
not defined in this paper's own words; amount of evolutionary history represented by a lineage set
isaac2007-mammals-edge-conservation-priorities-threat-phylogeny
Conservation priority setting based on phylogenetic diversity has frequently been proposed but rarely implemented. Here, we define a simple index that measures the contribution made by different species to phylogenetic diversity and show how the index might contribute towards species-based conservation priorities. We describe procedures to control for missing species, incomplete phylogenetic resol
not defined in this paper's own words; R package for representing and analysing phylogenetic sequencing data
mcmurdie2013-phyloseq-microbiome-analysis
Here we describe a software project, phyloseq, dedicated to the object-oriented representation and analysis of microbiome census data in R. It supports importing data from a variety of common formats, as well as many analysis techniques. These include calibration, filtering, subsetting, agglomeration, multi-table comparisons, diversity analysis, parallelized Fast UniFrac, ordination methods, and p
not defined in this paper's own words; R package providing microbiome-tailored analysis wrappers
mcmurdie2014-rarefying-microbiome-data-inadmissible
Our results have substantial implications for past and future microbiome analyses, particularly regarding the interpretation of differential abundance. Most microbiome studies utilizing high-throughput DNA sequencing to acquire culture-independent counts of species/OTUs have used either proportions or rarefied counts to address widely varying library sizes. Left alone, both of these approaches suf
not defined in this paper's own words; bodily activity whose amount and type are linked to health outcomes
bull2020-world-health-organization-physical-activity-sedentary-behaviour-guidelines
This paper reports on the development of new WHO guidelines on physical activity and sedentary behaviour. 5 These guidelines provide evidence-based public health recommendations concerning the amount (frequency, intensity, duration) and types of physical activity that offer significant health benefits and mitigate health risks (for definitions see table 1 ). These guidelines have been developed fo
not defined in this paper's own words; the movement a child does across the day
rich2013-accelerometer-minimum-wear-time
Children’s physical activity (PA) is a difficult behaviour to measure as it is sporadic, intermittent and characterised by substantial inter- and intra-individual variation [1] .
intensity-proxy sense: operational proxy for high-intensity contact
mossong2008-social-contacts-mixing-infectious-disease
Mining the contact data for frequency, duration, and type of contact based on association rules of maximum length 3 using thresholds of 0.5% (about 500 contacts) on the occurrence, positive dependence, and a 5% significance level on the Chi-square test of dependence resulted in a total of 99 rules of which 46 were of length 2 (see Table S4 ). 75% of the contacts lasting 4 h or more involved physic
not defined in this paper's own words; skin-to-skin contact and proxy for high-intensity contact
mossong2008-social-contacts-mixing-infectious-disease
Diaries recorded basic sociodemographic information about the participant, including employment status, level of completed education, household composition, age, and sex. Participants were assigned a random day of the week to record every person they had contact with between 5 a.m. and 5 a.m. the following morning. Participants were instructed to record contacted individuals only once in the diary
not defined in this paper's own words; direct physical binding between proteins, one kind of evidence STRING integrates
szklarczyk2022-string-database
Much of the complexity within cells arises from functional and regulatory interactions among proteins. The core of these interactions is increasingly known, but novel interactions continue to be discovered, and the information remains scattered across different database resources, experimental modalities and levels of mechanistic detail. The STRING database ( https://string-db.org/ ) systematicall
not defined in this paper's own words; molecular forces emphasized by one prediction tradition
jumper2021-highly-accurate-protein-structure-prediction-alphafold
Main The development of computational methods to predict three-dimensional (3D) protein structures from the protein sequence has proceeded along two complementary paths that focus on either the physical interactions or the evolutionary history. The physical interaction programme heavily integrates our understanding of molecular driving forces into either thermodynamic or kinetic simulation of prot
not defined in this paper's own words; computed local and global ground-state and response quantities
hoja2021-qm7x-quantum-mechanical-properties
Over 40 different physicochemical properties were computed to describe the structure–property and property–property relationships in QM7-X.
not defined in this paper's own words; molecular properties predicted or filtered by SwissADME
daina2017-swissadme-free-web-tool
To be effective as a drug, a potent molecule must reach its target in the body in sufficient concentration, and stay there in a bioactive form long enough for the expected biologic events to occur. Drug development involves assessment of absorption, distribution, metabolism and excretion (ADME) increasingly earlier in the discovery process, at a stage when considered compounds are numerous but acc
aim to solve partial differential equations
han2022-learning-physics-consistent-particle-interactions
not defined in this paper's own words in this sentence
karnakov2023-inverse-problems-discrete-loss
We compare ODIL with the popular method of physics-informed neural networks and show that it outperforms it by several orders of magnitude in computational speed while having better accuracy and convergence rates.
not defined in this paper's own words; studies in which a future study, or part of one, is run on a smaller scale
eldridge2016-defining-feasibility-and-pilot-stu
We initially adopted mutually exclusive definitions of pilot and feasibility studies. However, some Delphi survey respondents and the majority of open meeting attendees disagreed with the idea of mutually exclusive definitions. Their viewpoint was supported by definitions outside the health research context, the use of the terms ‘pilot’ and ‘feasibility’ in the literature, and participants at the
not defined in this paper's own words; the class as this review measures it across 54 papers and a registry
arain2010-what-is-a-pilot-or-feasibility-stu
We have shown that pilot studies have different objectives to RCTs and these should be clearly described. Participants in such studies should be informed that they are in a pilot study and that there may not be a further larger study.
not defined in this paper's own words; sequential arrangement of modules for identifying and measuring biological objects
mcquin2018-cellprofiler-next-generation-image
CellProfiler provides advanced algorithms for image analysis, organized as individual modules that can be placed in sequential order to form a pipeline. This pipeline is then used to identify and measure cells or other biological objects and their morphological features
not defined in this paper's own words; ordered sequence of modules applied to image groups
carpenter2006-cellprofiler
Most image analysis projects, even for new cell types or assays, can be accomplished simply by pointing and clicking using CellProfiler's graphical user interface (Figure 1a ). The software uses the concept of a 'pipeline' of individual modules (Figure 1b ; Additional data file 2). Each module processes the images in some manner, and the modules are placed in sequential order to create a pipeline:
particle image velocimetry
wolf2022-bioelectric-stimulation-collective-migration
particle-image velocimetry
liao2023-viscoelasticity-collective-bacteria-motion
IN THIS TRIAL NIACIN, AN ACTIVE PLACEBO CHOSEN TO PRODUCE A NOTICEABLE SOMATIC EFFECT, not an inert capsule. The companion trial in the same issue used a very low dose of psilocybin instead. Two teams reached the same result through two different solutions to the same problem - that an inert placebo is unblindable against a psychedelic
ross2016-rapid-and-sustained-symptom-reduct
In this double-blind, placebo-controlled, crossover trial, 29 patients with cancer-related anxiety and depression were randomly assigned and received treatment with single-dose psilocybin (0.3 mg/kg) or niacin, both in conjunction with psychotherapy.
read by the paper not as 'just placebo' but as a complex and embodied social process
gale2014-sociology-complementary-alternative-medicine
Hence, there is no ‘just’ about placebo; it is a complex and embodied social process.
iterative and separate analysis of two-dimensional slices from a 3D volume
mcquin2018-cellprofiler-next-generation-image
not defined in this paper's own words; iterative separate analysis of 2D slices from a 3D volume
mcquin2018-cellprofiler-next-generation-image
CellProfiler has enabled the scientific research community to create flexible, modular image analysis pipelines since its release in 2005. Here, we describe CellProfiler 3.0, a new version of the software supporting both whole-volume and plane-wise analysis of three-dimensional (3D) image stacks, increasingly common in biomedical research. CellProfiler’s infrastructure is greatly improved, and we
estimated by heat uptake, with nearly ninety percent of the surplus stored in the ocean
hansen2013-climate-change
The most promising approach is to measure the rate of changing heat content of the ocean, atmosphere, land, and ice [64] . Measurement of ocean heat content is the most critical observation, as nearly 90 percent of the energy surplus is stored in the ocean
not defined in this paper's own words; net excess energy retained by Earth, estimated from heat uptake across ocean, ice, land, and atmosphere
hansen2013-climate-change
Argo data reveal that in 2005–2010 the ocean’s upper 2000 m gained heat at a rate equal to 0.41 W/m 2 averaged over Earth’s surface [70] . Smaller contributions to planetary energy imbalance are from heat gain by the deeper ocean (+0.10 W/m 2 ), energy used in net melting of ice (+0.05 W/m 2 ), and energy taken up by warming continents (+0.02 W/m 2 ). Data sources for these estimates and uncertain
a term used to emphasise the interrelations of human health and the ecological and geophysical processes on which it depends
hinchliffe2018-healthy-publics-enabling-cultures
not defined in this paper's own words; planet-scale health context for anthropogenic microbiome change
berg2020-microbiome-definition-re-visited-o
The field of microbiome research has evolved rapidly over the past few decades and has become a topic of great scientific and public interest. As a result of this rapid growth in interest covering different fields, we are lacking a clear commonly agreed definition of the term “microbiome.” Moreover, a consensus on best practices in microbiome research is missing. Recently, a panel of international
Currently seaweed extracts (SE) are widely used as plant biostimulants, which are ‘any substance or microorganism applied to plants with the aim to enhance nutrition efficiency, abiotic stress tolerance and/or crop quality traits, regardless of its nutrients content’ [ 10 ].
boukhari2020-trends-in-seaweed-extract-based-biostimulants-manufacturing
Plant biostimulants are natural compounds that trigger physiological and molecular processes modulating crop yield and quality, though their primary function is neither to supply nutrients (fertilizers) nor to protect plants against soilborne or foliar pests and pathogens (Plant Protection Products) ( du Jardin, 2015 ).
rouphael2018-synergistic-biostimulatory-action-designing-the-next-generation
The Fertilising Products Regulation (FPR) (EU) 2019/1009 was published recently, and defined a plant biostimulant as “a product the function of which is to stimulate plant nutrition processes independently of the product’s nutrient content with the sole aim of improving one or more of the following characteristics of the plant or the plant rhizosphere: (a) nutrient use efficiency, (b) tolerance to abiotic stress, (c) quality traits, or (d) availability of confined nutrients in the soil or rhizosphere” [ 112 ].
boukhari2020-trends-in-seaweed-extract-based-biostimulants-manufacturing
a new class of crop input, offering a potential alternative to traditional, agro-chemical inputs
shukla2019-ascophyllum-biostimulants
include organic and inorganic natural substances
fiorentino2018-trichoderma-biostimulants
the total number of plant species
hu2021-aridity-biodiversity-soil-multifunctionality
not defined in this paper's own words; numbers of herbs, shrubs, and trees around traps
hallmann2017-flying-insect-biomass-decline-protected-areas
Plant inventories were conducted in the immediate surroundings (within 50m) of the trap, in the same season of insect sampling. These data permitted the assessment of plant species richness (numbers of herbs, shrubs and trees) and environmental conditions based on average Ellenberg values [ 46 – 48 ], as well as changes therein over time. Each Ellenberg indicator (we considered nitrogen, pH, light
a hedonic theory, silent on aesthetic value
huron2020-enjoyment-sad-music
It should be noted that pleasurable compassion theory is a hedonic theory rather than an aesthetic theory.
compassion must be positively valenced, not negatively valenced
huron2020-enjoyment-sad-music
external code integrated with MultiQC functionality through hooks and entry points
ewels2016-multiqc-analysis-results
MultiQC supports a lot of common bioinformatics tools but it is inevitable that research groups may have their own bespoke scripts or require other customization. To accommodate this, MultiQC is built in such a way that custom code can be tied into its functionality easily. Code hooks allow external plugins to access and modify the internal workings of the program. The use of Python setuptools ent
not defined in this paper's own words; dynamically loaded extension defining or implementing kernels
eastman2017-openmm-rapid-development-high-performance
At the lowest layer, OpenMM is based on a plugin mechanism. Calculations are defined by “computational kernels”. A plugin may define new kernels for doing new types of calculations, or alternatively it may provide new implementations of existing kernels, for example to support a new type of hardware. Plugins are dynamically discovered and loaded at runtime. Each one is packaged as a file that can
poly(methyl methacrylate)
liu2019-quantum-dot-anticounterfeiting-labels
polymethyl methacrylate
wang2021-structural-polymer-passive-radiative-cooling
not defined in this paper's own words; excitatory principal neurons, whose recovered sound-evoked activity is the phenomenon being explained
Kumar2023-cell-type-specific-plasticity-of-inhibitory
Overall, in contrast to the robust sound-evoked PN and PV activity after noise trauma, SOM sound-evoked activity remained significantly reduced throughout the 10 days after noise trauma.
production network
diem2024-firm-production-networks-predictability
perinecrotic niches
schiffer2018-glioblastoma-niche-concept
perineuronal nets
christensen2021-perineuronal-nets-grid-cell-network
Post-operative cognitive dysfunction
varpaei2024-postoperative-cognitive-dysfunction
portrayed as reversible MCI by some, as a mild neurocognitive disorder by others
varpaei2024-postoperative-cognitive-dysfunction
Liu et al. [ 13 ] portrayed POCD as a reversible form of MCI, while Needham et al. [ 12 ] described POCD as a mild neurocognitive disorder developing between 7 days and 1 year from surgery.
a prediction whose direction is linked to an unambiguously favorable or unfavorable allocation
chen2020-predictably-unequal-algorithmic-clinical-prediction
In many of the non-medical examples, there are clearly competing interests—for example, between society’s need for safety and security and an individual’s claim to freedom and freedom from harassment; between a lending institution’s responsibility to remain financially healthy and an individual’s desire for a loan. In these conditions, predictions can be said to be “polar”—i.e., one end of the pro
not defined in this paper's own words; prediction tied to allocation with a preferred direction for its subject
chen2020-predictably-unequal-algorithmic-clinical-prediction
Non-polar and polar prediction-supported health care decisions. Understanding the specific decisional context of a prediction-supported decision in healthcare is necessary to anticipate potential unfairness. In the medical context—particularly in the shared decision-making context—patients and providers often share a common goal of accurate prognostication in order to help balance benefits and har
not defined in this paper's own words; a choice between two pure phenotypes, which the authors say do not exist
malyshev2015-macrophage-plasticity-concept
Thus, reprogramming is more appropriate for describing the formation of any cell phenotype, whereas the terms polarization and alternate phenotype should be used to describe only the pure phenotypes, which, strictly speaking, do not exist. Therefore, we will use the term reprogramming rather than polarization or alternate phenotype .
not defined in this paper's own words; concentration of the leaning distribution into clusters - and explicitly able to occur with no social interaction at all, which is why it must be measured separately
cinelli2021-the-echo-chamber-effect-on-social
Note that polarization can happen independently from the structure or the very presence of social interactions.
not defined in this paper's own words; decision-makers represented in the guideline group
bull2020-world-health-organization-physical-activity-sedentary-behaviour-guidelines
The guidelines were developed in accordance with the processes set out in the WHO Handbook for Guidelines Development 7 and commenced in 2019. A Guideline Development Group (GDG) was established comprising relevant experts from required disciplines as well as policy makers and end users of the recommendations, with regional and gender balance. Details of the members of the GDG are available. 5
those involved in the creation and promotion of regulatory frames for transplant activities, including transplant laws, clinical protocols, algorithms design, communication strategy, public education, etc.
martinez-lopez2023-trust-organ-donation
not defined in this paper's own words; liberal, conservative, or other political affiliation
roselli2022-algorithmic-political-bias-ai
The goal here is to make progress with respect to this issue by focusing on an algorithmic bias that targets a dimension of social identity other than gender and racial group membership, namely people’s political orientation , i.e. their identity as liberal, conservative, moderate, Marxist, anarchist, and so on (Jost et al., 2009 ). Considering political orientation in this context is especially i
not defined in this paper's own words; position on a liberal-to-conservative dimension
rollwage2018-metacognitive-failure-radical-beliefs
Self-reported political orientation (“very liberal” = 0 to “very conservative” = 100) in both samples was somewhat skewed to the liberal end of the spectrum (Study 1: mean = 38.1; Study 2: mean = 38.0; Study 3: mean = 41.9) which is in line with previous reports of Amazon Mechanical Turk workers being more liberal than the general US population [ 41 ]. However, there remained substantial variabili
never wholly free of normative commitment, even when it aims only to understand
horton2017-realistic-political-theory
So, even an account of political theory that eschews normativity as its aim cannot entirely escape some element of normativity in practice.
on the ideal-theory view, articulating the ideal that political action then tries to realise
horton2017-realistic-political-theory
To simplify greatly, it is a fairly common view, especially among liberal moralists and ideal theorists generally, that political theory should articulate the ideal (of justice for example) while political action should be about trying to realise it; although this may be no easy matter and may not be an area in which political theorists have much to contribute.
on the interpretative view, an effort to understand politics, not to compete in it
horton2017-realistic-political-theory
Rather, what we should learn from a realist orientation is that the activity of politics is for those practically engaged in it, whereas political theory, by contrast, should not be engaged in an ideological competition, but be primarily about trying to understand, to make sense of politics.
not defined in this paper's own words; anthropogenic stressor contributing to marine change
selig2014-global-priorities-marine-biodiversity-conservation
Widespread impacts of human activities on the oceans [1] continue to cause declines in species diversity and abundance [2] , [3] . As recognition of the benefits that healthy marine ecosystems provide to people increases [4] , [5] , protecting biodiversity and the essential ecosystem services it supports has become a priority for the scientific community, resource managers, and national and intern
not defined in this paper's own words; omitted pressure
venter2016-global-terrestrial-human-footprint-maps
Moreover, our work is subject to three primary limitations. First, like all attempts to map cumulative pressures we did not fully account for all human pressures. Some of the missing and static pressures, such as invasive species and pollution, may be closely associated with pressures we did consider, and therefore their inclusion may not affect our overall results. Second, a lack of available dat
a polymer with significantly better prospects for commercial OPV due to its relative scalability and stability
holliday2016-p3ht-polymer-solar-cells-acceptor
the main donor material for the fabrication of large area PSCs
sun2018-low-cost-polymer-donor-solar-cells
not defined in this paper's own words; a long-chain hygroscopic insulating polymer
zhao2016-polymer-scaffold-self-healing-perovskite
Here polyethylene glycol (PEG), which meets the requirements, is chosen to be added in the precursor solution
not defined in this paper's own words; the axle chain along which the α-CD rings slide
imran2014-stretchable-thermosensitive-hydrogels-polyrotaxane
This slide-ring gel is composed of polyrotaxane (PR) 20 , which consists of α-cyclodextrin (α-CD), polyethylene glycol (PEG) with terminal carboxylic acids and a capping agent (1-adamantanamine).
not defined in this paper's own words; solar cells whose active layer blends a conjugated polymer donor with an acceptor
bin2016-non-fullerene-polymer-solar-cells
Bulk-heterojunction polymer solar cells (PSCs) are composed of a blend active layer of a p -type conjugated polymer as donor and an n -type semiconductor as acceptor sandwiched between an anode and a cathode
not defined in this paper's own words; solar cells whose active layer is a polymer donor blended with an acceptor
sun2018-low-cost-polymer-donor-solar-cells
Polymer solar cells (PSCs) have received widespread interests and have developed quickly in recent years because of its advantages of solution processing, light weight and flexibility in comparison with the traditional silicon-based solar cells 1 , 2 .
DECLARED TO HAVE NO AGREED MEANING, IN THE ABSTRACT OF A REVIEW ABOUT ITS MEANINGS: `Despite this, there is no consensus definition for polypharmacy. A systematic review was conducted to identify and summarise polypharmacy definitions in existing literature.` The absence of a definition is the paper's stated reason to exist.
masnoon2017-what-is-polypharmacy-a-systematic
Multimorbidity and the associated use of multiple medicines (polypharmacy), is common in the older population. Despite this, there is no consensus definition for polypharmacy. A systematic review was conducted to identify and summarise polypharmacy definitions in existing literature
`five or more medications daily`, used by 46.4% (n = 51) of 110 studies - a plurality, not a majority
masnoon2017-what-is-polypharmacy-a-systematic
There was a wide range of variability in the definitions of polypharmacy as well as associated terms such as minor, moderate and major polypharmacy. The most commonly used term was polypharmacy, but there was variation with regard to the actual definition of polypharmacy, which ranged from two or more medications to 11 or more medications [ 13 , 90 ]. The most commonly used definition for polyphar
poor signal strength defined as <15 dB
tewarie2012-oscar-ib-consensus-criteria
set at 15 dB by the authors' own admission arbitrarily
tewarie2012-oscar-ib-consensus-criteria
We had arbitrarily defined that the signal strength had to be larger than 15 dB.
not defined in this paper's own words; diagnostic accuracy measures
benchimol2015-record-routinely-collected-health-data
The risk of misclassification bias in studies using routine health data, as in many other epidemiological studies, may threaten the validity of study findings [ 31 ]. Although the risk of misclassification is amplified in studies using databases containing large populations, such studies offer an opportunity to study rare or uncommon diseases [ 32 ]. Validation of identification methods has been i
not defined in this paper's own words; prevalence-dependent applied metrics
ainsworth2020-performance-characteristics-of-fiv
Whereas sample numbers were partly decided by the availability of samples required to address the study aims, the sample size was prospectively calculated to provide 80% power to detect a lower 95% CI of at least 96·0% if the actual assay sensitivity was 98·3% (which required ≥460 positive samples) and 80% power to detect a lower 95% CI of at least 96·0% if the actual assay specificity was 97·7% (
the post-study probability that it is true is the positive predictive value, PPV
ioannidis2005-false-findings
TP divided by TP plus FP
wood2019-improved-metagenomic-analysis-kraken-2
Using these categories, we define rank-level sensitivity as the proportion of input fragments that were true-positive classifications, or TP/(TP + VP + FN + FP). We define rank-level positive predictive value (PPV) as the proportion of classifications that were true positives (excluding vague positives), or TP/(TP + FP). Along with these definitions of rank-level sensitivity and PPV, we also defin
not defined in this paper's own words; selection favouring new variants
oostra2018-phenotypic-plasticity-climate-change
While negative values of Tajima’s D can indicate positive selection, genes experiencing positive selection are expected to be rare in the genome and outliers compared to genome-wide averages.
the disposition of the healthier, younger population to move
vanyoro2019-medical-xenophobia-counter-narratives
In contrast, the term post-perceptual leaves open the possibility that conscious perception may occur with or without these subsequent processing events.
Pitts2014-isolating-neural-correlates-of-conscious-per
While the central tenets of Aru et al.'s ( 2012 ) proposal are well-justified, we prefer to use the terms “pre-conscious” and “post-perceptual” instead of “pre-requisite” and “consequence.” In our view, the term pre-requisite is too general and the term consequence too restrictive.
Pitts2014-isolating-neural-correlates-of-conscious-per
not defined in this paper's own words; ML correction of statistical biases in physical-model output
rasp2020-weatherbench
ML can be applied to weather prediction in many different ways. Two long-standing applications of ML are post-processing – the correction of statistical biases in the output of physical models – and statistical forecasting – the prediction of variables not directly output by the physical model. Traditionally, this has been done using simple linear techniques but more recently modern machine learni
not defined in this paper's own words; downstream use of parsed data
ewels2016-multiqc-analysis-results
Single cell and population studies are perhaps the perfect examples of large projects where accurate quality control of numerous datasets is critical. MultiQC is able to parse data for thousands of samples within minutes, adapting report output as required. Parsed data saved by MultiQC can be used for post-processing and dataset filtering. Reports reveal overall analysis success and make it easy t
encompasses personal strength, a shift in priorities, and a deeper appreciation for life and relationships
feyzbabaie2025-psychological-distress-nursing-students
not defined in this paper's own words; growth a person reports after living through a trauma themselves
jeong2025-vicarious-resilience-nurses
Although vicarious resilience shares conceptual space with constructs such as compassion satisfaction (CS), vicarious post-traumatic growth (VPTG), and post-traumatic growth (PTG), it remains a theoretically distinct phenomenon.
not defined in this paper's own words; the distribution of parameters given the data
sunnaker2013-approximate-bayesian-computation
their method was not yet exactly identical to what is now known as ABC, as it aimed at approximating the likelihood rather than the posterior distribution.
the inferred state probabilities for an ancestral internal node given descendants and branch lengths
price2010-fasttree-approximately-maximum-likelihood-trees
The key data structures for the maximum likelihood phase are the tree topology, the branch lengths, and the posterior distributions for each internal node. (FastTree stores the tree with a trifurcation at the root, but the placement of the root is not biologically meaningful and does not affect the likelihood [5] .) The posterior distribution for an internal node describes the state of the corresp
not defined in this paper's own words; Bayesian distributions used to refine source-parameter estimates
abbott2016-gravitational-waves
To refine them we use general relativity-based models [77,78,87,88], some of which include spin precession, and for each model perform a coherent Bayesian analysis to derive posterior distributions of the source parameters
not defined in this paper's own words; ancestral-state probability vectors
price2010-fasttree-approximately-maximum-likelihood-trees
The key data structures for the maximum likelihood phase are the tree topology, the branch lengths, and the posterior distributions for each internal node. (FastTree stores the tree with a trifurcation at the root, but the placement of the root is not biologically meaningful and does not affect the likelihood [5] .) The posterior distribution for an internal node describes the state of the corresp
not defined in this paper's own words; and the form of it that undermined the framework
Drieu2019-hippocampal-sequences-during-exploration-mec
This effectively undermines the theoretical framework that theta sequences are required to bring spike trains in close temporal proximity and enable synaptic potentiation, underlying hippocampus-dependent memory encoding.
not defined in this paper's own words; toxicology's name for the one-sided interaction ecology calls synergism
piggott2015-reconceptualizing-synergism-and-an
In toxicology, in contrast to ecological usage, if one chemical is rendered more effective by the presence of another that has no effect or a different effect on its own, the interaction is called potentiation or sensitization (Odum and Barrett 2005 ). Chou ( 2010 ) argues that this interaction type is not a true synergism because it is “one-sided” and the underlying modes of action are different.
not defined in this paper's own words; probability of recovering a true IBD segment
ralph2013-geography-recent-genetic-ancestry-europe
We applied the fastIBD method, implemented in BEAGLE v3.3 [31] , to the European subset of the Population Reference Sample (POPRES) dataset (dbgap accession phs000145.v1.p1, [34] ), which includes language and country-of-origin data for several thousand Europeans genotyped at 500,000 SNPs. Our simulations showed that we have good power to detect long IBD blocks (probability of detection 50% for bl
not defined in this paper's own words; the discriminator between the two terms - the inherent imbalance between provider and patient, which competency can be practised without ever addressing
curtis2019-cultural-safety-rather-than-cultural
Cultural safety is about acknowledging the barriers to clinical effectiveness arising from the inherent power imbalance between provider and patient [65]. This concept rejects the notion that health providers should focus on learning cultural customs of different ethnic groups. Instead, cultural safety seeks to achieve better care through being aware of difference, decolonising, considering power
Feelings of powerlessness were measured as a second potential mediator, which refers to the perception of being incapable of influencing an outcome by taking action [30] .
jolley2014-the-effects-of-anti-vaccine-conspiracy-theories
not defined in this paper's own words; a loss of control that, unlike helplessness, eases with rest
azizi2023-helplessness-nurses-covid
According to their experience, helplessness is much more enduring than powerlessness, does not decrease with rest and there is no relationship between workload and the intensity of feeling helpless
not defined in this paper's own words; posterior parietal cortex - correlates of accumulating evidence, and A MINIMAL ROLE in decisions guided by it
Erlich2015-distinct-effects-of-prefrontal-and-parietal
Here, in rats performing an auditory evidence accumulation task, we inactivated the frontal orienting fields (FOF) and posterior parietal cortex (PPC), two rat cortical regions that have neural correlates of accumulating evidence and that have been proposed as central to decision-making.
not defined in this paper's own words; the area whose borders and whose role are both disputed
Pho2018-task-dependent-representations-of-stimulus-a
In particular, the posterior parietal cortex (PPC) has been hypothesized to play a key role in at least some types of decision tasks in both primates 1 , 2 and in rodents 3 – 5 .
protein–protein interaction
ramilowski2015-ligand-receptor-signalling-network, teschendorff2017-single-cell-entropy-potency
public and patient involvement
hughes2018-public-involvement-concept-analysis
The pragmatic principle focuses on how the concept has been used within the literature, whether it accurately describes the phenomenon, and its usefulness to clinical practice
hannon2022-perinatal-resilience-concept
considers the concept's usefulness and whether it has been operationalised
smith2022-parental-sleep-sick-child
no consensus definition; the 2008 definition is the accepted one
davanidavari2019-prebiotics-definition
However, the above-mentioned definition, which was given in 2008, has been accepted in recent years.
a non-digestible food ingredient that beneficially affects the host by selectively stimulating the growth and/or activity of one or a limited number of bacteria in the colon, and thus improves host health
davanidavari2019-prebiotics-definition
not defined in this paper's own words; the paper defers to the ISAPP consensus definitions (its refs 12 and 13)
swanson2020-isapp-consensus-statement-synbiotics
The qualifier ‘established’ refers to a probiotic or prebiotic that meets the requirements of the globally accepted definitions from International Scientific Association for Probiotics and Prebiotics consensus 12 , 13 .
a crucial climatic factor that connects extreme wet and dry events
pendergrass2017-precipitation-variability-warmer-climate
Yet it is sometimes assumed that precipitation variability does not change in a warming climate [e.g., refs 4 , 5 ], or that mean precipitation and its variability change at the same rate 6 .
not defined in this paper's own words; how much precipitation fluctuates about its mean, which the paper measures by the standard deviation
pendergrass2017-precipitation-variability-warmer-climate
We quantify precipitation variability by its standard deviation. We remove the linear trend from each time series before calculating its standard deviation.
More formally, PA has been defined as a “management strategy that uses information & communication technologies (ICT) to collect data from multiple sources in view of their later use in decisions concerning production activities” ( National Research Council, 1997 ).
sambo2019-hydroponic-solutions-for-soilless-production-systems-issues
Precision Agriculture (PA) is comprised of near and remote sensing techniques using IoT sensors, which help to monitor crop states at multiple growth levels.
shafi2019-precision-agriculture-techniques-and-practices-from-considerations
gain assigned to prediction error according to certainty
mencke2019-atonal-music-uncertainty-pleasure
The estimation of the degree to which we are certain or uncertain in our predictions and the modulation of gain in neural responses relative to this certainty is referred to as the precision-weighting of PE ( Friston, 2009 ).
not defined in this paper's own words; selective weighting of prediction errors
williams2018-predictive-processing-representation-wars
For now, however, this emaciated summary of predictive processing must do. There are numerous dimensions of the theory I have had to leave out in the foregoing presentation, not least the crucial role of “precision-weighting” throughout the predictive processing architecture, in which the influence of sensory and prior information is modulated at every level by estimates of their context-variable
necessary factors that must be present before an implementation mechanism can activate
lewis2018-classification-causality-implementation-mechanisms
Finally, there are two types of effect modifiers that are important to articulate, both of which can occur across multiple levels of analysis: moderators and preconditions. Moderators are factors that increase or decrease the level of influence of an implementation strategy on an outcome. See Figure 1 in which an example for intra-individual and organizational-level moderators for audit and feedba
not defined in this paper's own words; necessary conditions for mechanism activation
lewis2018-classification-causality-implementation-mechanisms
First, it is important to ensure that implementation strategies are appropriately specified. Some strategies in published compilations are well defined but may not be specified in terms of its core component that can have a reliable and measureable impact. Second, linkages between strategies and mechanisms need to be generated. Existing compilations do not offer mechanisms by which strategies act,
phenomena or events that precede an instance and that influences the concept
smith2022-parental-sleep-sick-child
not defined in this paper's own words; AlphaFold output for expected positional error under residue-conditioned alignment
varadi2021-alphafold-protein-structure-database
The Predicted Aligned Error (PAE) is another output of the AlphaFold system. It indicates the expected positional error at residue x if the predicted and actual structures are aligned on residue y (using the Cα, N and C atoms). PAEs are measured in Ångströms and capped at 31.75 Å. Scientists can use these values to assess the confidence in the relative position and orientation of different parts o
not defined in this paper's own words; the pairwise positional error matrix from the confidence head
abramson2024-alphafold3
We also developed confidence measures that predict the atom-level and pairwise errors in our final structures. In AF2, this was done directly by regressing the error in the output of the structure module during training. However, this procedure is not applicable to diffusion training, as only a single step of the diffusion is trained instead of a full-structure generation (Fig. 2c ). To remedy thi
not defined in this paper's own words; prediction R2 of the polygenic score in held-out data
lloyd-jones2019-polygenic-prediction-bayesian-regression
In simulation and cross-validation using 12 real traits and 1.1 million variants on 350,000 individuals from the UK Biobank, SBayesR improves prediction accuracy relative to commonly used state-of-the-art summary statistics methods at a fraction of the computational resources.
the percentage of native contacts among the top L/k predicted contacts
wang2017-protein-contact-deep-learning
not defined in this paper's own words in this sentence
peters2024-llms-infer-psychological-dispositions
Higher message volume was associated with higher levels of predictive accuracy, but a substantial share of variance was captured in as little as 20 status messages.
not defined in this paper's own words; correct classification of future individual outcomes
tortora2020-neuroprediction-ai-forensic-psychiatry-criminal-justice
At present, the results of risk assessment tools, however, are far from perfect, especially for long term prediction; current criminal risk assessment tools show poor to moderate accuracy, and a good balance between false positives and false negatives is an issue that should be considered, depending both on the social and political context and on the stage of the criminal justice process in which
not defined in this paper's own words; fit between narrated possibility and later event
constant2024-narrative-active-inference
One research design that could be used as a basis to test our claim that narratives are related to anticipating the adaptive challenges of the immediate or longer term future is straightforward: examining the role of narrative in enhancing the accuracy of the predictions that we generate or update. D’Argembeau and Garcia Jimenez (2020) created a methodology that could be used to test hypotheses re
not defined in this paper's own words; subject rating under a constrained stimulus set
conway2013-neuroaesthetics-trouble-beauty
Subjectivist studies such as these overcome the difficulty of defining beauty by asking the participants to first rate visual objects or sounds [24] , [27] . Brain activity of each subject is then assessed to their own set of “beautiful” versus “ugly” stimuli. Four experimental-design challenges surface. First, the options are necessarily restricted, and might not include a truly beautiful choice—
the utility weight assigned to a content characteristic
pennycook2022-nudging-social-media-accuracy
This inattention account was formalized by Pennycook and colleagues (2021) using a limited-attention utility model. The modeling framework combines three lines of theory. The first is utility theory, which is the cornerstone of economic models of choice ( Barberis 2013 ; Stigler 1950 ). When people are choosing across a set of options (in our case, whether to share a given piece of content), they
(1948) , who argued that prefrontal areas should be defined as having connections with the mediodorsal nucleus of the thalamus (MD).
Laubach2018-what-if-anything-is-rodent-prefrontal-cortex
For neuroscientists studying humans and nonhuman primates, prefrontal cortex (PFC) typically means the granular and orbital parts of the frontal cortex.
Laubach2018-what-if-anything-is-rodent-prefrontal-cortex
not defined in this paper's own words; initialization with pretrained rather than random parameters
voulodimos2018-deep-learning-for-computer-vision
One of the difficulties that may arise with training of CNNs has to do with the large number of parameters that have to be learned, which may lead to the problem of overfitting. To this end, techniques such as stochastic pooling, dropout, and data augmentation have been proposed. Furthermore, CNNs are often subjected to pretraining, that is, to a process that initializes the network with pretraine
not defined in this paper's own words; transfer learning from other subjects' data
forenzo2024-deep-learning-bci-continuous-tracking
The results from these experiments showed that pretraining did not significantly improve performance, but updating the models’ midsession may have some benefit.
narrowed by stipulation to point prevalence ('hereafter referred to as prevalence'), and point prevalence is then called the gold-standard recall period, a reference chosen rather than found
ferrari2024-global-burden-371-diseases
In this section, we provide an overview of the burden estimation process for GBD 2021, with further details provided in appendix 1. Methods used to generate burden estimates closely followed those for GBD 2019; however, here we summarise new or updated processes since GBD 2019. Detailed descriptions of analytical methods and models for each cause of disease burden are also available in a searchabl
not defined in this paper's own words; non-intervention review objective
page2021-prisma-systematic-review-reporting-guideline
The PRISMA 2020 statement has been designed primarily for systematic reviews of studies that evaluate the effects of health interventions, irrespective of the design of the included studies. However, the checklist items are applicable to reports of systematic reviews evaluating other interventions (such as social or educational interventions), and many items are applicable to systematic reviews wi
not defined in this paper's own words; single-site genotype summary compared with IBD geography
ralph2013-geography-recent-genetic-ancestry-europe
The first two principal components of the matrix of genotypes, after suitable manipulations, can reproduce the geographic positions of European populations (e.g., [12] – [14] ). Therefore, it is natural to compare the structure we see within populations in terms of IBD sharing to the positions on the principal components map. (A PCA map of these populations, produced by EIGENSTRAT [38] , is shown
not defined in this paper's own words; subspace learned by a linear autoencoder under squared error
voulodimos2018-deep-learning-for-computer-vision
An autoencoder is trained to encode the input **x** into a representation **r**( **x**) in a way that input can be reconstructed from **r**( **x**) \ [33\]. The target output of the autoencoder is thus the autoencoder input itself. Hence, the output vectors have the same dimensionality as the input vector. In the course of this process, the reconstruction error is being minimized, and the correspo
evaluation of data according to four philosophical principles: epistemology, linguistics, pragmatism, and logic
hannon2022-perinatal-resilience-concept
the analysis of a concept according to four broad philosophical principles: epistemological, pragmatic, linguistic, and logical
smith2022-parental-sleep-sick-child
not defined in this paper's own words; protection or restoration targets
venter2016-global-terrestrial-human-footprint-maps
Mapping human pressures to the environment is an essential first step to identifying priority areas for protection or restoration of natural systems. Understanding the spatial distribution of pressures, as well as their change through time, also provides insights for studies on macro-ecological patterns. The Human Footprint maps for 1993 and 2009 represent the first temporally-consistent maps of t
places with high richness, range rarity, or proportional range rarity and relatively high or low human impact
selig2014-global-priorities-marine-biodiversity-conservation
Human impacts can disproportionately affect areas of high biodiversity [25] so spatially quantifying the degree of human impact in these areas is a key component of conservation prioritization efforts [16] , [20] , [21] . We used a global model of estimated human impacts ( Fig. 1D ) [1] to understand how human activities may be affecting marine biodiversity within Exclusive Economic Zones (EEZs) a
Preferred Reporting Items for Systematic Reviews and Meta-Analyses
polancolevican2022-social-media-literacy-concept, zhang2023-empowerment-older-adults-chinese
not defined in this paper's own words; the 27-item checklist and four-phase flow diagram this paper introduces
moher2009-prisma
The PRISMA Statement consists of a 27-item checklist ( Table 1 ; see also Text S1 for a downloadable Word template for researchers to re-use) and a four-phase flow diagram ( Figure 1 ; see also Figure S1 for a downloadable Word template for researchers to re-use).
must meet specific criteria, including a documented health benefit
vinderola2022-postbiotics-concept
not defined in this paper's own words; the paper defers to the ISAPP consensus definitions (its refs 12 and 13)
swanson2020-isapp-consensus-statement-synbiotics
The qualifier ‘established’ refers to a probiotic or prebiotic that meets the requirements of the globally accepted definitions from International Scientific Association for Probiotics and Prebiotics consensus 12 , 13 .
Process includes domains associated with the interaction between patients and health‐care providers.
santana2017-how-to-practice-person-centred-care-a
a set of interrelated or interacting activities that transforms inputs into outputs
gartner2022-patient-centered-care-pathway
not defined in this paper's own words; feasibility of the steps required by the main study
thabane2010-a-tutorial-on-pilot-studies-the-what
In general, the rationale for a pilot study can be grouped under several broad classifications - process, resources, management and scientific (see also http://www.childrens-mercy.org/stats/plan/pilot.asp for a different classification): • Process: This assesses the feasibility of the steps that need to take place as part of the main study. Examples include determining recruitment rates, retention
a prerequisite in determining the success of the intervention’s delivery
mohler2015-credeci-2-guideline
not defined in this paper's own words; a study run beside a trial that asks how delivery, mechanisms and setting shape results
skivington2021-complex-interventions-framework
Process evaluation can answer questions around fidelity and quality of implementation (eg, what is implemented and how?), mechanisms of change (eg, how does the delivered intervention produce change?), and context (eg, how does context affect implementation and outcomes?).
not defined in this paper's own words
capraro2024-generative-ai-socioeconomic-inequalities
These studies underscore the potential of generative AI to disproportionately boost productivity for workers with less experience or skill.
not defined in this paper's own words; programming output affected by language and collaboration practices
wilson2014-best-practices-scientific-computing
An extreme form of code review is pair programming , in which two developers sit together while writing code. One (the driver) actually writes the code; the other (the navigator) provides real-time feedback and is free to track larger issues of design and consistency. Several studies have found that pair programming improves productivity [67] , but many programmers find it intrusive. We therefore
not defined in this paper's own words; “generally understood to develop at least in part through socialisation”
joynes2018-professional-identity-interprofessional
Professional identity within health and social care professions is generally understood to develop at least in part through socialisation, a process explored in various ethnographic studies of different professions since the 1960s
respondents perceive it becoming stronger and more secure with experience and seniority
joynes2018-professional-identity-interprofessional
The idea that professional identity becomes more secure with experience is not surprising (indeed, many respondents acknowledged that their identity had changed over time and would continue to change), but it is important in the context of one other emergent theme: that collaborative practice is perceived to be learned most effectively through experience, which is discussed later in the findings.
not defined in this paper's own words; non-intervention review objective
page2021-prisma-systematic-review-reporting-guideline
The PRISMA 2020 statement has been designed primarily for systematic reviews of studies that evaluate the effects of health interventions, irrespective of the design of the included studies. However, the checklist items are applicable to reports of systematic reviews evaluating other interventions (such as social or educational interventions), and many items are applicable to systematic reviews wi
not defined in this paper's own words; the expected clinical outcome
lao2017-deep-learning-radiomics-glioblastoma
The poor prognosis is mainly due to the spatial and temporal intra-tumor heterogeneity.
not defined in this paper's own words; executable code that should be correct and readable
wilson2014-best-practices-scientific-computing
Scientists writing software need to write code that both executes correctly and can be easily read and understood by other programmers (especially the author's future self). If software cannot be easily read and understood, it is much more difficult to know that it is actually doing what it is intended to do. To be productive, software developers must therefore take several aspects of human cognit
not defined in this paper's own words; something explicitly compiled before use
wilson2017-good-enough-practices-scientific-computing
We use the term "script" to mean "something that is executed directly as is" and "program" to mean "something that is explicitly compiled before being used". The distinction is more one of degree than kind—libraries written in Python are actually compiled to bytecode as they are loaded, for example—so one other way to think of it is "things that are edited directly" and "things that are not edited
not defined in this paper's own words; theoretical accounts of programme operation
vlaev2019-financial-incentives-health-behavior
It is well established that a higher price reduces consumption [ 20 ]. So, we see that smoking consumption in Europe has been seen to decrease by about 5% for every 10% increase in the real price of cigarettes and that increasing the price of alcohol is among the most effective options for reducing consumption [ 21 , 22 ]. Price signals to influence behavior in healthcare can take forms besides tr
the ideas and assumptions underlying how, why and in what circumstances complex social interventions work
dalkin2015-realist-mechanism-concept
not defined in this paper's own words; signalling proteins that drive inflammation, such as IL-12 and TNF-α
malyshev2015-macrophage-plasticity-concept
IL-10 suppresses the production of proinflammatory cytokines [ 13 ], reactive oxygen species (ROS), and nitric oxide (NO).
not defined in this paper's own words; signalling proteins that promote inflammation
jarczak2022-cytokine-storm-definition
Picomolar amounts of this lipid A are sufficient to activate macrophages and induce the expression of proinflammatory cytokines such as IL-1β and TNF [ 82 , 83 ].
not defined in this paper's own words; inflammatory gene products promoted by the TLR4 signaling routes
chen2023-macrophages-immunoregulation-therapeutics
The PRRs, such as TLRs, recognize bacterial moieties. Specifically, LPS and other microbial ligands activate TLR4, activating the TIR-domain-containing adapter-inducing interferon-β (TRIF) and the myeloid differentiation response 88 (MyD88). The TRIF-regulated mechanism triggers kinase cascades and eventually activates the interferon-responsive factor 3 (IRF3). IRF3 tracks the secretion of IFNs, i
not defined in this paper's own words; bacterial and archaeal kingdoms included in microbiota
berg2020-microbiome-definition-re-visited-o
Based on the recent advances in the area, we suggest the revival of the original definition of the microbiome term suggested by Whipps et al. [ 40 ]. The definition, which contains all important points that are valid even 30 years after its publication in 1988, was extended by two explanatory sentences differentiating the terms microbiome and microbiota and pronouncing its dynamic character. The m
not defined in this paper's own words; domain for which higher-rank asymptotes were not reached
mora2011-how-many-species-earth-ocean
First, we accounted for undiscovered higher taxa by fitting, for each taxonomic level from phylum to genus, asymptotic regression models to the temporal accumulation curves of higher taxa ( Figure 1A–1E ) and using a formal multimodel averaging framework based on Akaike's Information Criterion [23] to predict the asymptotic number of taxa of each taxonomic level (dotted horizontal line in Figure 1
not defined in this paper's own words; area-based protection compared with EDGE priorities
isaac2007-mammals-edge-conservation-priorities-threat-phylogeny
The top 100 EDGE species span all the major mammalian clades [being distributed among 18 orders and 52 families recognised by ref 35] and display a comparable range of morphological and ecological disparity, including the largest and smallest mammals, most of the world's freshwater cetaceans, an oviparous mammal and the only species capable of injecting venom using their teeth. However, around thr
not defined in this paper's own words; land designated for biodiversity protection
venter2014-targeting-global-protected-area-expansion-biodiversity
In 2010 the 193 parties to the Convention of Biological Diversity (CBD) adopted a new strategic plan and set of targets to tackle the continuing decline in biodiversity [1] , [2] . A key element of this plan is Aichi target 11, which includes a commitment to expand the global coverage of terrestrial protected areas from the current 13% to 17% by 2020 [1] . This could drive the most rapid expansion
including internal assets and external resources that may be associated with counteracting the effects of risk factors
lee2012-resilience-youth-development
not defined in this paper's own words; circumstances that lower a person's chance of suicide
wang2022-suicide-resilience
Later, Johnson defined suicide resilience as a perception or a set of beliefs that buffer individuals from suicidality when facing stressors and developed the buffering hypothesis where suicide resilience factors are not merely protective factors ( 14 ).
not defined in this paper's own words; conditions that favour an individual's adjustment to adversity
yan2022-resilience-stroke-patients
During the 1970s, resilience gradually came to be considered an outcome of positive adaptation, with its content including possible risk and protective factors that favor individual adjustment. When the number of protective factors is increased, resilience against external challenges becomes stronger
not defined in this paper's own words; homo- and heteromeric assemblies predicted jointly
mirdita2022-colabfold
Predicting the three-dimensional (3D) structure of a protein from its sequence alone remains an unsolved problem. However, by exploiting the information in multiple sequence alignments (MSAs) of related proteins as the raw input features for end-to-end training, AlphaFold2 (ref. 1 ) was able to predict the 3D atomic coordinates of folded protein structures at a median global distance test total sc
not defined in this paper's own words; interacting protein assemblies inferred from candidate lists
zhou2019-metascape-systems-level-datasets
A critical component in the interpretation of systems-level studies is the inference of enriched biological pathways and protein complexes contained within OMICs datasets. Successful analysis requires the integration of a broad set of current biological databases and the application of a robust analytical pipeline to produce readily interpretable results. Metascape is a web-based portal designed t
not defined in this paper's own words; 3D protein and nucleic-acid structure repository
david2020-molecular-representations-ai-drug-discovery-review
Proteins are polypeptides made up of 50 or more amino acids. They are generally biological targets; however, therapeutic protein drugs have been engineered [ 94 ]. The largest repository of 3D structures of proteins and nucleic acids is the Protein Data Bank (PDB) [ 17 ], which contains more than 150,000 structures. PDB entries contain the atomic coordinates of every atom in a protein structure as
not defined in this paper's own words; worldwide archive of experimentally determined macromolecular structures
varadi2021-alphafold-protein-structure-database
Proteins are essential macromolecules with vital biological functions and, thus, are involved in a wide range of research activities and medical and biotechnological applications, from fighting infectious diseases to tackling environmental pollution ( 1 , 2 ). Knowledge of the three-dimensional (3D) arrangement of the atoms of a protein can provide essential clues to understanding the roles and me
not defined in this paper's own words; the archive whose molecular types AF3 aims to cover and on which it trains
abramson2024-alphafold3
Here we present AlphaFold 3 (AF3)—a model that is capable of high-accuracy prediction of complexes containing nearly all molecular types present in the Protein Data Bank 32 (PDB) (Fig. 1a,b ). In all but one category, it achieves a substantially higher performance than strong methods that specialize in just the given task (Fig. 1c and Extended Data Table 1 ), including higher accuracy at protein s
A protein family is a set of proteins that are evolutionarily related, typically involving similar structures or functions.
asgari2015-protvec
not defined in this paper's own words; the unit whose members are reviewed together
aleksander2023-the-gene-ontology-knowledgebase-in
The Phylogenetic Annotation using GO (PAN-GO) project creates a set of biocurator-reviewed, selected GO annotations. The PAN-GO process is described in detail in Gaudet et al. 2011 . Briefly, using the PAINT software tool, a biocurator reviews all experimentally supported GO annotations collected for all members of a protein family, in the context of a phylogenetic tree from the PANTHER resource (
not defined in this paper's own words; physical binding between two proteins
ramilowski2015-ligand-receptor-signalling-network
In particular, we used known interacting ligand–receptor pairs and public protein–protein interaction (PPI) information to generate the first large-scale draft map of primary cell-to-cell interactions.
not defined in this paper's own words; physical interaction between proteins, here as a network
teschendorff2017-single-cell-entropy-potency
Here we propose that differentiation potential can be estimated in silico by integrating a cell's transcriptomic profile with a high quality protein–protein interaction (PPI) network to define a cell-specific probabilistic signalling process (in effect, a random walk) on the network (Methods).
not defined in this paper's own words; Prodigal outputs passed to functional annotation
cantalapiedra2021-eggnog-mapper-v2-functional-annotation
Another major capability added to the new eggNOG-mapper workflow is predicting ORFs directly from assembled contigs ( fig. 1 A ). ORF detection, only available for prokaryotic assemblies, is performed using Prodigal ( Hyatt et al. 2010 ), which provides the protein sequences to be used by eggNOG-mapper for functional annotation. Prodigal modes (“normal,” “anonymous,” and “training”) as well as cus
not defined in this paper's own words; amino-acid sequence input
price2010-fasttree-approximately-maximum-likelihood-trees
Inferring evolutionary relationships, or phylogenies, from families of related DNA or protein sequences is a central method in computational biology. Sequence-based phylogenies are widely used to understand the evolutionary relationships of organisms and to analyze the functions of genes.
not defined in this paper's own words; amino-acid sequences for which structures may be unknown
jumper2021-highly-accurate-protein-structure-prediction-alphafold
Proteins are essential to life, and understanding their structure can facilitate a mechanistic understanding of their function. Through an enormous experimental effort 1 – 4 , the structures of around 100,000 unique proteins have been determined 5 , but this represents a small fraction of the billions of known protein sequences 6 , 7 . Structural coverage is bottlenecked by the months to years of
not defined in this paper's own words; computing a protein's 3D structure from sequence
abramson2024-alphafold3
The core challenge of molecular biology is to understand and ultimately regulate the complex atomic interactions of biological systems. The AF3 model takes a large step in this direction, demonstrating that it is possible to accurately predict the structure of a wide range of biomolecular systems in a unified framework. Although there are still substantial challenges to achieve highly accurate pre
not defined in this paper's own words; macromolecule AI application
david2020-molecular-representations-ai-drug-discovery-review
Popular applications of the macromolecular representations introduced in this work are in protein structure prediction, as having an accurate picture of a protein and the role it plays in a given disease can help scientists to develop molecules for the right target. Pillong and Schneider [ 141 ] successfully applied their pseudo-receptor model in a virtual screening study aiming to identify aminog
not defined in this paper's own words; biological macromolecules whose structures support function
jumper2021-highly-accurate-protein-structure-prediction-alphafold
Proteins are essential to life, and understanding their structure can facilitate a mechanistic understanding of their function. Through an enormous experimental effort 1 – 4 , the structures of around 100,000 unique proteins have been determined 5 , but this represents a small fraction of the billions of known protein sequences 6 , 7 . Structural coverage is bottlenecked by the months to years of
not defined in this paper's own words; long amino-acid polypeptides
david2020-molecular-representations-ai-drug-discovery-review
Proteins are polypeptides made up of 50 or more amino acids. They are generally biological targets; however, therapeutic protein drugs have been engineered [ 94 ]. The largest repository of 3D structures of proteins and nucleic acids is the Protein Data Bank (PDB) [ 17 ], which contains more than 150,000 structures. PDB entries contain the atomic coordinates of every atom in a protein structure as
not defined in this paper's own words; single-cell protein abundance features
zhang2020-cancer-immunotherapy-tumor-infiltrating-immune-cells
Single-cell protein analysis is a pivotal approach to understanding the phenotypic heterogeneity of TILs. Mass cytometry, or cytometry by time-of-flight (CyTOF), utilizing metal-isotope-labeled antibodies in combination with finely tuned mass spectrometry-based detection, enables simultaneous quantification of more than 40 proteins from millions of individual cells at low cost. 175 By contrast, sc
Motivated by this consistency along with the homology of canonical cortical circuitry in sensory areas built into HNN, we applied the input sequence of the existing SEF model distributed with HNN as a starting point for our AEF simulation (namely the ‘default.param’ parameter file). This sequence consisted of a proximal input, followed by a distal input, followed by a second subsequent proximal input (Jones et al. 2007 ; Neymotin et al. 2020 ), and represents a canonical feedforward, feedback, feedforward pattern of activation.
Kohl2022-neural-mechanisms-underlying-human-auditory
not defined in this paper's own words; class preferring nearby donor-acceptor pairs
salzman2013-cell-type-specific-features-of-cir
Circular RNA isoform splice site selection varies across genes When a gene encodes multiple alternatively spliced circular isoforms, what patterns characterize the use of splice acceptor and donor pairs to produce the circle junction? To study this question, we distinguished three broad classes of splice site pairings, which we term stereotyped, proximal and combinatorial pairing, respectively. Ex
polymer solar cell
liu2014-polymer-solar-cells-aggregation
protein structural classification
newaz2020-network-protein-structural-classification
not defined in this paper's own words; capacitor-like charge storage at an electrode surface
chen2019-nasicon-cathode-sodium-ion-batteries
The faradic process can provide a fixed working potential, while the non-faradic process (commonly regarded as pseudocapacitance) can help by providing fast charge transitions with extended cycling life.
Pseudocapacitance occurs through (i) monolayer ion adsorption on the electrode surface with charge transfer, (ii) redox at the electrode surface (RuO 2 · x H 2 O, ref. 5 ) or (iii) ultrafast ion intercalation into the bulk ( T -Nb 2 O 5 , ref. 6 ), whereby charge storage is partially liberated from the trade-off.
wang2015-pseudocapacitance-of-mxene-nanosheets-for-high-power
named by several terms with almost the same meaning
sun2022-psychological-birth-trauma
Instead, various terms such as “birth/childbirth trauma,” “traumatic birth/childbirth,” “traumatic birth/childbirth experience,” or “psychological birth/childbirth trauma” are used, with almost the same meaning.
the woman’s subjective feeling caused by events directly or indirectly related to childbirth, which is manifested as intertwined painful emotional experiences that originate in the birth process and last until postpartum
sun2022-psychological-birth-trauma
not defined in this paper's own words; general mental strain during the pandemic
lee2021-entrapment-covid-pandemic
Self-control acts as a buffer and allows one to better cope with the stresses resulting from COVID-19, and the general psychological distress decreases when one perceives they can exercise self-control
not defined in this paper's own words; named as reduced where academic resilience is higher
shen2024-academic-resilience-nursing-students
Studies [ 21 , 38 , 39 , 52 , 55 , 59 ] have indicated that academic resilience plays a significant role in enhancing nursing students’ adaptability during the school period, career maturity, adversity quotient level, probability of academic success and a sense of belonging to school. Additionally, it has been found to reduce the degree of psychological distress experienced by nursing students
a broad term encompassing various psychological conditions, ranging from mild, subclinical symptoms to more severe conditions such as depression, anxiety, stress, or post-traumatic stress disorder
feyzbabaie2025-psychological-distress-nursing-students
not defined in this paper's own words; 881-feature descriptor representation
jiang2021-graph-neural-networks-molecular-representation
All the molecules were minimized using the MMFF94 force field in MOE (Version: 2015.1001) with the default parameters. Then, the expert-crafted descriptors and fingerprints were computed to develop the descriptor-based models. To comprehensively represent molecular structures, 206 MOE 1-D and 2-D descriptors and two sets of fingerprints, including 881 PubChem fingerprints (PubchemFP) and 307 subst
not defined in this paper's own words; bit representation used for chemical retrieval
sorokina2021-coconut-open-natural-products
Searching for an exact substructure in a MongoDB database of molecules appears to be surprisingly easy. Each molecule in the database needs to have their fingerprints of choice (in COCONUT are used the PubChem fingerprints) to be precomputed and stored as a list of bytes (BinData type in MongoDB). The query molecule (substructure) then needs to have its fingerprint to be also computed and to be ma
not defined in this paper's own words
hinchliffe2018-healthy-publics-enabling-cultures
To be clear, this sense of healthy publics as a generative and contested collective is quite different to more established senses of public health.
not defined in this paper's own words; population-health domain targeted by implementation
lewis2018-classification-causality-implementation-mechanisms
In recent years, there has been growing recognition of the importance of implementing evidence-based practices as a way to improve the quality of health care and public health. However, the results of implementation efforts have been mixed. About two-thirds of efforts fail to achieve the intended change ( 2 ), and nearly half have no effect on outcomes of interest ( 3 ). Implementation strategies
inferred from the number of web pages referenced by a search engine
troudet2017-taxonomic-bias-biodiversity-data
not defined in this paper's own words; what the public stands to gain from knowing an item of information
zufall2023-legal-balancing-of-interests
The European Court of Justice stated in its Google Spain judgment ( 2014 ) that the public interest in a particular piece of information diminishes over the passage of time. This was labeled “the right to be forgotten”.
conscious state lacking ordinary phenomenal content
milliere2018-psychedelics-meditation-self-consciousness
purported objectless consciousness devoid of ordinary phenomenal content
milliere2018-psychedelics-meditation-self-consciousness
Pure Consciousness (PC) . A state of consciousness described as “objectless” or entirely devoid of phenomenal content. While the possibility of such states is very controversial, certain conscious states induced by some meditative practices and classical psychedelics might lack at least ordinary phenomenal content. In the Hindu and Buddhist traditions, the practice of Samadhi is often described as
an aim with a determinable end-result, so an open-ended objective such as cancer research is not one
becker2024-gdpr-purpose-definition
A purpose must allow the determination of how long the data should be processed. 37 This implies that a valid purpose cannot give rise to an indefinite duration of processing without a clearly determined or determinable end-result.
the purpose pertains to the aims of processing
becker2024-gdpr-purpose-definition
not defined in this paper's own words; parvalbumin-expressing inhibitory interneurons, the category SOM is defined against - and NOT ALL PV CELLS ARE FS CELLS
Yavorska2016-somatostatin-expressing-inhibitory-interneur
Based on histochemical markers, we can divide cortical inhibitory cells into three non-overlapping categories in mice: those that express parvalbumin (PV), somatostatin (SOM), or vasointestinal peptide (VIP).
not defined in this paper's own words; parvalbumin-expressing interneurons, cast as the STABILIZERS - a role built on a quantity the paper does not measure
Kumar2023-cell-type-specific-plasticity-of-inhibitory
Our results suggest that the increased PV sound-evoked activity 10 days after NIHL (Fig. 4d, k , cyan) may stabilize the increased PN activity (Fig. 2 ). However, 1 day after NIHL, we observed reduced sound-evoked PV activity
position weight matrices
janky2014-iregulon-gene-regulatory-network
position weight matrix
ehsan2018-signal-peptide-classification-model
not defined in this paper's own words; and the class that is therefore all that was measured
Pho2018-task-dependent-representations-of-stimulus-a
Pilot experiments using transgenic mice with tdTomato expressed in PV + and SOM + interneurons revealed that calcium signals from these neurons were generally too weak to be measured with volume scanning, and therefore the vast majority of task-responsive cells were likely to be excitatory pyramidal neurons 3 .
not defined in this paper's own words; the excitatory cells the RS and bursting names were borrowed from
Yavorska2016-somatostatin-expressing-inhibitory-interneur
Regular spiking and bursting firing types were originally described for cortical pyramidal neurons (Connors et al., 1982 ), and it is important to note that the firing properties of RS or bursting SOM cells are analogous but not identical to those classically observed in pyramidal neurons.
not defined in this paper's own words; the principal cell
Drieu2019-hippocampal-sequences-during-exploration-mec
Theta oscillations dominate the hippocampal LFP and powerfully shape both pyramidal cell and interneuron firing.
not defined in this paper's own words; neural-model software backend
jiang2021-graph-neural-networks-molecular-representation
For the development of the four descriptor-based models, the DNN algorithm was implemented in the PyTorch package (Version: 1.3.1 + cu92) of Python (Version: 3.6.5 × 64), and the XGBoost (Version: 0.80), RF and SVM algorithms were implemented in the scikit-learn package (Version: 0.20.1) of Python [ 58 ]. All the four graph-based models were implemented by the Deep Graph Library (DGL) package (Ver
not defined in this paper's own words; specialized distributed CPU/GPU array framework
harris2020-array-programming-numpy
The community’s efforts to fill this gap led to a proliferation of new array implementations. For example, each deep-learning framework created its own arrays; the PyTorch 38 , Tensorflow 39 , Apache MXNet 40 and JAX arrays all have the capability to run on CPUs and GPUs in a distributed fashion, using lazy evaluation to allow for additional performance optimizations. SciPy and PyData/Sparse both
modularity, whose configurational-model null does not hold for geometrical networks such as PFNs
song2015-megena-gene-coexpression-network
However, this assumption does not hold for geometrical networks such as PFNs.
overall modularity
song2015-megena-gene-coexpression-network
quenching fraction
cismesia2015-photoredox-chain-processes
Quantum dots
choi2015-quantum-dot-led-transfer-printing
semiconductor quantum dots
santhosh2016-vacuum-rabi-splitting-plasmonic-cavity
not defined in this paper's own words; apparently elementary qualities that the paper treats as context-bound phenomenal artifacts
forti2025-what-is-consciousness-and-what-it-is-for-an
Sensations such as the redness of red or the painfulness of pain are inseparable from the context of the experience to which they belong, making qualia appear as phenomenal artifacts. Hence, the simplest forms of experience are not found in sensations, but rather in forms of perception in which the qualitative aspects of consciousness necessarily have relational significance ( Forti, 2024a ). Furt
subjective or phenomenological experience
wahbeh2022-what-if-consciousness-is-not-an-emergent-pro
“what it feels like” to have exactly this experience in the here-and-now
waldfuhrmann2021-classical-concert-listening
a research method that has been widely used to analyse the meaning of extensive and complex text-based data
jang2020-staff-family-partnership-long-term-care
not defined in this paper's own words; systematic coding of texts into a category system
brunig2024-intersectionality-bioethics-review
Each article was analysed in full text according to the principles of qualitative content analysis (QCA) in reference to Kuckartz
not defined in this paper's own words in this sentence
khrennikov2024-contextual-measurement-quantum-theory
We remark that, generally, quantum mechanics (QM) is characterized by a diversity of interpretations.
not defined in this paper's own words; the physical theory behind first-principles chemistry methods
smith2019-neural-network-potential-transfer-learning
In the modern age, the computer revolution has brought about powerful computational methods based on quantum mechanics (QM) to create a new paradigm for chemistry research 3 , 4 .
AS ITS COINER DEFINED IT, WITH USEFULNESS EXCLUDED: a task no existing or easily foreseeable classical device could perform, disregarding whether it is useful, and he adds that from a commercial perspective usefulness obviously does matter - so the word names a milestone in capability and not in value
preskill2018-nisq
I suggested this term as a way to characterize computational tasks performable by quantum devices, where one could argue persuasively that no existing (or easily foreseeable) classical device could perform the same task, disregarding whether the task is useful in any other respect. I was trying to emphasize that now is a very privileged time in the coarse-grained history of technology on our plane
I spoke enthusiastically about quantum supremacy as an impending milestone for human civilization
preskill2018-nisq
not defined in this paper's own words; interactive statistical language and environment
mcmurdie2013-phyloseq-microbiome-analysis
Many of the previously mentioned OTU-clustering applications also perform additional downstream analyses (File S1). However, typically an investigator must port the human-unreadable output data files to other software for additional processing and statistical analysis specific to the goals of the investigation. The powerful statistical, ecological, and graphics tools available in R [24] make it an
not defined in this paper's own words; the statistical programming environment selected as Bioconductor's implementation base
gentleman2004-bioconductor-open-software-development
CBB poses a wide range of challenges, and any software development project will need to consider which specific aspects it will address. For the Bioconductor project we wanted to focus initially on bioinformatics problems. In particular we were interested in data management and analysis problems associated with DNA microarrays. This orientation necessitated a programming environment that had good
Let R be the ratio of the number of “true relationships” to “no relationships” among those tested in the field.
ioannidis2005-false-findings
a measure of the proportion of variance explained by a model
harrison2018-mixed-effects-modelling-ecology
In a linear modelling context, R 2 gives a measure of the proportion of explained variance in the model, and is an intuitive metric for assessing model fit. Unfortunately, the issue of calculating R 2 for (G)LMMs is particularly contentious; whereas residual variance can easily be estimated for a simple linear model with no random effects and a Normal error structure, this is not the case for (G)L
the proportion of variance explained by the input parameters in a model
cai2021-surrogate-models-machine-learning
R 2 represents the proportion of variance that has been explained by input parameters in a model.
Jones argues that a category of difference, such as race, is a proxy for racism (a structure of domination), not a biological marker of innate differences. 33
wesp2019-intersectionality-transgender-health
IRTHJ emphasizes that readers of these articles recognize that race is a product of racialization processes 56 and white supremacy.
not defined in this paper's own words; rapid amplification of cDNA ends, used to determine the genome termini
wu2020-new-coronavirus-respiratory-disease-china
To investigate the possible aetiological agents associated with this disease, we collected bronchoalveolar lavage fluid (BALF) and performed deep meta-transcriptomic sequencing. The clinical specimen was handled in a biosafety level 3 laboratory at Shanghai Public Health Clinical Center. Total RNA was extracted from 200 μl of BALF and a meta-transcriptomic library was constructed for pair-end (150
discrete correlations between heuristic atomic properties of atoms on a graph
moosavi2020-metal-organic-framework-diversity
RACs are discrete correlations between heuristic atomic properties (e.g., the Pauling electronegativity, nuclear charge, etc.) of atoms on a graph.
revised autocorrelations
moosavi2020-metal-organic-framework-diversity
a style of holding and acting on rigid, intolerant, and authoritarian beliefs rather than a left-right position alone
rollwage2018-metacognitive-failure-radical-beliefs
However, we stress that radicalism is likely to reflect a general cognitive style that transcends the political domain—as exemplified by links between religious fundamentalism and increased dogmatism and authoritarianism [ 22 , 26 ]—and instead refers to how one’s beliefs are held and acted upon [ 27 ].
not defined in this paper's own words; rigid and intolerant belief style spanning political, religious, and scientific issues
rollwage2018-metacognitive-failure-radical-beliefs
Similarly, while our measures of radicalism were derived from questionnaires tapping into political attitudes, it is possible that impairments in metacognition may constitute a general feature of radicalism about political, religious, and scientific issues.
a process that extracts high-throughput quantitative features from radiographic images and builds predictive models relating image features to genomic patterns and clinical outcomes
lao2017-deep-learning-radiomics-glioblastoma
not defined in this paper's own words; extracting and mining large numbers of medical imaging features quantifying tumor phenotypic characteristics
parmar2015-machine-learning-radiomic-biomarkers
Radiomics extracts and mines large number of medical imaging features quantifying tumor phenotypic characteristics.
not defined in this paper's own words; an extension that lets the framework accommodate repeated measurements and longitudinal single-cell sampling
finak2015-mast-a-flexible-statistical-framew
Our framework permits the analysis of complex experiments, such as repeated single-cell measurements under various treatments or longitudinal sampling of single cells from multiple subjects with a variety of background characteristics (e.g., sex, age), because it can easily be extended to accommodate random effects.
not defined in this paper's own words; grouping effects represented by a shared distribution
harrison2018-mixed-effects-modelling-ecology
Linear mixed effects models and generalized linear mixed effects models (GLMMs), have increased in popularity in the last decade ( Zuur et al., 2009 ; Bolker et al., 2009 ). Both extend traditional linear models to include a combination of fixed and random effects as predictor variables. The introduction of random effects affords several non-exclusive benefits. First, biological datasets are often
not defined in this paper's own words; CTT difference between true and observed scores
boateng2018-best-practices-developing-validating-scales
CTT allows the prediction of outcomes of constructs and the difficulty of items ( 136 ). CTT models assume that items forming constructs in their observed, manifest forms consist of a true score on the domain of interest and a random error (which is the differences between the true score and a set of observed scores by an individual) ( 137 ). IRT seeks to model the way in which constructs manifest
not defined in this paper's own words; error introduced by clinically similar but numerically distinct codes
rajkomar2018-scalable-accurate-deep-learning-electronic-health-records
Perhaps the most challenging prediction in our study is that of predicting a patient’s full suite of discharge diagnoses. The prediction is difficult for several reasons. First, a patient may have between 1 and 228 diagnoses, and the number is not known at the time of prediction. Second, each diagnosis may be selected from approximately 14,025 ICD-9 diagnosis codes, which makes the total number of
not defined in this paper's own words; chance variation that can inflate or deflate a test result
greenland2016-statistical-tests-p-values-confidence-intervals-power
The P value is the probability that the test hypothesis is true; for example, if a test of the null hypothesis gave P = 0.01, the null hypothesis has only a 1 % chance of being true; if instead it gave P = 0.40, the null hypothesis has a 40 % chance of being true . No! The P value assumes the test hypothesis is true—it is not a hypothesis probability and may be far from any reasonable probability
a bagged ensemble of decision trees combined by vote or averaging
jiang2021-graph-neural-networks-molecular-representation
Random forest is another representative ensemble learning ML algorithms. It constructs a strong classifier or regressor by an ensemble of individual decision trees under the frame of bagging and makes predictions by majority vote or averaging of multiple decision trees [ 10 , 15 ]. In the implementation of RF algorithm, sample perturbation via bootstrap sampling of the training data and feature pe
not defined in this paper's own words in this sentence
jeantet2020-multi-sensor-loggers-sea-turtle-behaviour
We trained five supervised machine learning algorithms—(i) classification and regression trees (CART), (ii) random forest (RF), (iii) extreme gradient boosting (EGB), (iv) support vector machine (SVM), and (v) linear discriminant analysis (LDA)—to associate the seven diving behaviour categories with the corresponding patterns of different input variables.
not defined in this paper's own words; initial value fixing a stochastic analysis sequence
sandve2013-ten-simple-rules-reproducible-computational-research
Many analyses and predictions include some element of randomness, meaning the same program will typically give slightly different results every time it is executed (even when receiving identical inputs and parameters). However, given the same initial seed, all random numbers used in an analysis will be equal, thus giving identical results every time it is run. There is a large difference between o
not defined in this paper's own words; record enabling exact reproduction of resampling
mcmurdie2014-rarefying-microbiome-data-inadmissible
We have included in Protocol S1 the complete source code for computing the survey, simulations, normalizations, and performance assessments described in this article. This includes the code to acquire publicly available data via the phyloseq interface to the microbio.me/qiime server, a function called microbio_me_qiime [32] . Where applicable, this code includes the RNG seed so that the simulation
not defined in this paper's own words; proposed evaluation design for adherence interventions
page2021-prisma-systematic-review-reporting-guideline
Various strategies to increase the use of reporting guidelines and improve reporting have been proposed. They include educators introducing reporting guidelines into graduate curricula to promote good reporting habits of early career scientists 65 ; journal editors and regulators endorsing use of reporting guidelines 18 ; peer reviewers evaluating adherence to reporting guidelines 61 66 ; journals
not defined in this paper's own words; the assignment-based design that observational studies complement rather than replace
vonelm2007-strobe
Randomised trials cannot answer all important questions about a given intervention.
not defined in this paper's own words; subsampling columns to equal sequencing effort
mcmurdie2013-phyloseq-microbiome-analysis
In multivariate analyses such as PCA, large differences in variances between columns are corrected by standardizing each column; i.e. dividing each column by its standard deviation. Thus each column will have the same weight in the multivariate analysis. For OTU abundance tables, such a procedure is inappropriate as the disparities in column sums can be 100-fold. Methods based on chi-squared dista
not defined in this paper's own words; taxon resampling curves for coverage or richness analysis
mcmurdie2014-rarefying-microbiome-data-inadmissible
Instead, microbiome analysis workflows often begin with an ad hoc library size normalization by random subsampling without replacement, or so-called rarefying [17] – [19] . There is confusion in the literature regarding terminology, and sometimes this normalization approach is conflated with a non-parametric resampling technique — called rarefaction [20] , or individual-based taxon re-sampling cur
not defined in this paper's own words; data retained as originally generated
wilson2017-good-enough-practices-scientific-computing
Save the raw data (1a) . Where possible, save data as originally generated (i.e., by an instrument or from a survey). It is tempting to overwrite raw data files with cleaned-up versions, but faithful retention is essential for rerunning analyses from start to finish, for recovery from analytical mishaps, and for experimenting without fear. Consider changing file permissions to read-only or using s
not defined in this paper's own words; source values retained behind figures
sandve2013-ten-simple-rules-reproducible-computational-research
From the time a figure is first generated to it being part of a published article, it is often modified several times. In some cases, such modifications are merely visual adjustments to improve readability, or to ensure visual consistency between figures. If raw data behind figures are stored in a systematic manner, so as to allow raw data for a given figure to be easily retrieved, one can simply
not defined in this paper's own words; supplemental study data for appraisal and reuse
benchimol2015-record-routinely-collected-health-data
We strongly support the dissemination of detailed information on study methods and results. When possible, we encourage the prior or simultaneous publication of the study protocol, raw data results, and, if applicable, programming code. This information is useful to peer reviewers and readers in assessing the validity of study findings. A number of opportunities are available to researchers for op
Reach, Effectiveness, Adoption, Implementation, and Maintenance
smith2020-rapid-implementation
not defined in this paper's own words; a public-health evaluation framework covering reach, effectiveness, adoption, implementation, and maintenance
nilsen2015-implementation-theories-models-frameworks
There is a category of frameworks that provide a structure for evaluating implementation endeavours. Two common frameworks that originated in public health are RE-AIM (Reach, Effectiveness, Adoption, Implementation, Maintenance) [ 124 ] and PRECEDE-PROCEED (Predisposing, Reinforcing and Enabling Constructs in Educational Diagnosis and Evaluation-Policy, Regulatory, and Organizational Constructs in
Reactive oxygen species (ROS) are highly reactive ions and free radicals, including singlet oxygen ( 1 O 2 ), superoxide radicals (O 2 •− ), hydroxyl radicals (•OH), and peroxides (O 2 2− ), which play imperative roles in numerous physiological processes 1 , 2 .
wang2018-biomimetic-nanoflowers-by-self-assembly-of-nanozymes
not defined in this paper's own words; normally produced in limited quantity and involved in cell homeostasis
hussain2016-oxidative-stress-polyphenols
Reactive oxygen species are normally produced within the body in limited quantity and are important compounds involved in the regulation of processes involving the maintaining of cell homeostasis and functions such as signal transduction, gene expression, and activation of receptors [ 2 ].
not defined in this paper's own words; MPNN graph-vector phase
jiang2021-graph-neural-networks-molecular-representation
MPNN is a common framework for GNN that was used for chemical prediction in 2017 by Gilmer et al. [ 54 ], and it has shown versatility in many applications such as natural language processing, image segmentation, chemical/molecular graphs, and so on. Many recently proposed GNN architectures for molecular property prediction can be formulated in this flexible framework [ 24 , 26 , 34 , 37 ]. In the
not defined in this paper's own words; pooling node embeddings into a graph-level embedding used for prediction tasks
reiser2022-graph-neural-networks-materials-chemistry
Finally, in the readout phase, a graph-level embedding y is obtained by pooling node embeddings of the entire graph via a parametric readout function R (⋅). The final representation of the graph is used for training both regression and classification tasks.
not defined in this paper's own words; diagnostic assay confirming cohort infection
roltgen2020-defining-the-features-and-duration
A total of 254 individuals with a positive SARS-CoV-2 real-time RT-PCR (rRT-PCR) nasopharyngeal swab test were included in the study (fig. S1). Study subjects were identified either after routine serology testing or occupational health screening in the Stanford Health Care Clinical Laboratories for anti-SARS-CoV-2 RBD IgM and IgG antibodies (136 asymptomatic individuals or outpatients), or after t
not defined in this paper's own words; respiratory-sample method for direct virus detection
ainsworth2020-performance-characteristics-of-fiv
Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) has emerged as a novel human pathogen, causing a global pandemic in 2020, with more than 25 million confirmed infections and more than 840 000 deaths to date. 1 Testing and case ascertainment have been crucial to controlling virus transmission and in developing public health and political strategies to mitigate the effect of this pathoge
natural kind realism (mind-independent joints) versus scientific realism (theories responsive to the world)
crane2021-two-approaches-natural-kinds
The dominant accounts in the philosophy of science approach reject the mind-independent natural joints characteristic of natural kind realism; consequently, the kinds they identify do not have the sort of metaphysical structures that can ground rigid designation. The move toward pluralism, and toward accepting discipline-relative kinds, crosscutting kinds, functional kinds, and multiply realizable
not defined in this paper's own words; lifelike resolution and perception, the past focus of VR and AR work
cipresso2018-virtual-augmented-reality-research
The gap between the past and the future of AR and VR research is about the “realism” that was the key aspect in the past versus the “interaction” that is the key aspect now
capacity to understand reasons and alter action because of their normative force
cervantes2021-moral-zombies-algorithms-agents
I discuss autonomy as self-governance and as reasons-responsiveness together because they seem intimately related. More precisely, it seems that self-governance requires reasons-responsiveness. Moral agents make decisions and act accordingly at least partly because they are responding to reasons. If an entity is not the kind of creature who can understand reasons, then she will not govern herself
not defined in this paper's own words; changing conduct because reasons matter
cervantes2021-moral-zombies-algorithms-agents
A robot could respond to its environment in ways that are in accordance with ethics (e.g. if it sees a human being carrying something heavy, it offers to carry it for them). That a human being is struggling with carrying her groceries and that it will be effortless for the robot to carry them for her, however, is not a reason for the robot—it is an instruction. The robot cannot desire to relieve t
not defined in this paper's own words; exchange of genome segments among sarbecoviruses, inferred from conflicting trees
wu2020-new-coronavirus-respiratory-disease-china
To determine the evolutionary relationships between WHCV and previously identified coronaviruses, we estimated phylogenetic trees on the basis of the nucleotide sequences of the whole-genome sequence, the non-structural protein genes ORF1a and ORF1b , and the main structural proteins encoded by the S , E , M and N genes (Fig. 2 and Extended Data Fig. 5 ). In all phylogenies, WHCV clustered with me
not defined in this paper's own words; meiotic crossing-over that fragments ancestral segments over time
ralph2013-geography-recent-genetic-ancestry-europe
We can only hope to learn from genetic data about those common ancestors from whom two individuals have both inherited the same genomic region. If a pair of individuals have both inherited some genomic region from a common ancestor, that ancestor is called a “genetic common ancestor,” and the genomic region is shared “identical by descent” (IBD) by the two. Here we define an “IBD block” to be a co
not defined in this paper's own words; indexed title or abstract for a report
page2021-prisma-systematic-review-reporting-guideline
Record —The title or abstract (or both) of a report indexed in a database or website (such as a title or abstract for an article indexed in Medline). Records that refer to the same report (such as the same journal article) are “duplicates”; however, records that refer to reports that are merely similar (such as a similar abstract submitted to two different conferences) should be considered unique.
not defined in this paper's own words; reporting guideline for observational routine-data research
benchimol2015-record-routinely-collected-health-data
Routinely collected health data, obtained for administrative and clinical purposes without specific a priori research goals, are increasingly used for research. The rapid evolution and availability of these data have revealed issues not addressed by existing reporting guidelines, such as Strengthening the Reporting of Observational Studies in Epidemiology (STROBE). The REporting of studies Conduct
not defined in this paper's own words; a network of recurrently connected units trained here to produce reach velocities
michaels2016-neural-population-dynamical-system
Secondly, we show that movement intention could be decoded from a recurrent neural network (RNN) trained to complete the same task using representational methods, such as the population vector, even though the preferred directions of single neurons were highly unstable, suggesting that high levels of decoding performance using representational models do not necessarily inform the mechanistic opera
not defined in this paper's own words; a neural network that processes a sequence step by step
liu2019-deepmod-nanopore-dna-modifications
Here, using raw electric signals of Oxford Nanopore long-read sequencing data, we design DeepMod, a bidirectional recurrent neural network (RNN) with long short-term memory (LSTM) to detect DNA modifications.
They are called “recurrent” as they carry out the same process for every element, with the previous computations determining the current output, while they have a “memory” that stores information pertaining to what has been calculated so far.
benos2021-machine-learning-in-agriculture-a-comprehensive-updated
not defined in this paper's own words; LSTM-based model architecture
rajkomar2018-scalable-accurate-deep-learning-electronic-health-records
Patient records vary significantly in length and density of data points (e.g., vital sign measurements in an intensive care unit vs outpatient clinic), so we formulated three deep learning neural network model architectures that take advantage of such data in different ways: one based on recurrent neural networks (long short-term memory (LSTM)), 80 one on an attention-based TANN, and one on a neur
not defined in this paper's own words; how many times a prediction is fed back through the model
mirdita2022-colabfold
ColabFold exposes many internal parameters of AlphaFold2 such as the recycle count (default 3), which controls the number of times the prediction is repeatedly fed through the model. For difficult targets as well as for designed proteins without known homologs, additional recycling iterations can result in a high-quality prediction (Supplementary Fig. 5 ). Rerunning the CASP14 benchmark with a rec
the number of times a prediction is fed back through the model, three by default
mirdita2022-colabfold
AlphaFold2 improves the predicted protein structure by recycling (by default) three times, meaning that the prediction is fed multiple times through the model. We exposed the recycle count as a customizable parameter given that additional recycles can often improve a model (Supplementary Fig. 6 ) at the cost of a longer run time. We also implemented an option to specify a tolerance threshold to st
not defined in this paper's own words; recursive whole-network iterative refinement
jumper2021-highly-accurate-protein-structure-prediction-alphafold
The network comprises two main stages. First, the trunk of the network processes the inputs through repeated layers of a novel neural network block that we term Evoformer to produce an N seq × N res array ( N seq , number of sequences; N res , number of residues) that represents a processed MSA and an N res × N res array that represents residue pairs. The MSA representation is initialized with the
not reuse of material but AlphaFold2 recycling, feeding the prediction repeatedly back through the model, a count the user raises to improve hard targets; the everyday word carries a wholly technical sense here
mirdita2022-colabfold
AlphaFold2 improves the predicted protein structure by recycling (by default) three times, meaning that the prediction is fed multiple times through the model. We exposed the recycle count as a customizable parameter given that additional recycles can often improve a model (Supplementary Fig. 6 ) at the cost of a longer run time. We also implemented an option to specify a tolerance threshold to st
not defined in this paper's own words; rules reassigning garbage-coded deaths
ferrari2024-global-burden-371-diseases
GBD 2021 methods follow principles from the ICD, 11th edition, whereby each death is assigned to the underlying cause that initiated events leading to death. Vital registration data reporting assigned ICD so-called garbage codes (a term used in GBD to represent non-specific codes, implausible codes, or intermediate rather than underlying cause of death codes) were assigned to the most likely cause
proportionate, fixed-proportion or statistical rules that move deaths from unusable codes to probable underlying causes
vos2020-global-burden-369-diseases
Vital registration with medical certification of cause of death is a crucial resource for the GBD cause of death analysis in many countries. Cause of death data obtained using various revisions of the International Classification of Diseases and Injuries (ICD) 9 were mapped to the GBD cause list. Many deaths, however, are assigned to causes that cannot be the underlying cause of death (eg, cardiop
direct and causal (non-descriptional) versus descriptive
crane2021-two-approaches-natural-kinds
One of the attractions of direct reference theories is their apparent naturalism. Rather than explaining reference in terms of “senses” or “intensions,” whereby speakers grasp a description that determines an extension, reference is explained through causal relations with referents. By extending the direct reference theory from proper names to natural kind terms, philosophers hoped to provide a na
not defined in this paper's own words; field carrying a persistent source identifier
aleksander2023-the-gene-ontology-knowledgebase-in
All annotations are supported by evidence, comprising two fields in the annotation file ( Fig. 1b ): an evidence code that describes the type of evidence, and a reference that lists a persistent identifier for tracing the source (provenance) of the original data
the reference case definition is a stipulated standard that other measurement methods are corrected towards, not a claim that it is the true definition
vos2020-global-burden-369-diseases
In previous cycles of GBD, data reported using alternative case definitions or measurement methods were corrected to the reference definition or measurement method primarily as part of the Bayesian meta-regression models. For example, in DisMod-MR, the population data were simultaneously modelled as a function of country covariates for variation in true rates and as a function of indicator variabl
contextually defined baselines relative to which monetary gains and losses are valued
vlaev2019-financial-incentives-health-behavior
A study from the developing world provides a further phenomenon which is that reference points matter when offering incentives. Evidence from the field, suggests that people care more about what they gain or lose around what they already have rather than what they may end up with. It is known that many people tested for human immunodeficiency viruses (HIV) in the developing world do not pick up th
not defined in this paper's own words; contextual baselines relative to which gains and losses are judged
vlaev2019-financial-incentives-health-behavior
If we are going to use incentive schemes to influence health behaviors, then it is important that we give them the best chance of working. Behavioral economics integrates insights from psychology with the laws of economics and provides a number of robust psychological phenomena that help to better explain human behavior. Individuals’ decisions in relation to incentives may be shaped by more subtle
not defined in this paper's own words; assembled representation differing from the underlying genome
amemiya2019-the-encode-blacklist-identificatio
The coupling of high-throughput technology with classic genomics assays enables us to study genome-wide architecture and regulation. Assays using high-throughput sequencing as a read-out of a genomic signal rely on an accurate genomic annotation and mapping. Inconsistencies in the underlying annotation exist at regions where assembly has been difficult. For instance, repetitive regions may be coll
not defined in this paper's own words; the database entry that names and represents a closed-reference OTU
callahan2017-exact-sequence-variants-should-rep
The observation of a closed-reference OTU indicates that at least one sequencing read was sufficiently similar to the associated reference sequence to be mapped to its OTU. However, it does not guarantee that the reference sequence itself was observed—to the contrary, that is often not the case.
Definition of the reference standard (i.e., outcome variable).
kocak2023-checklist-for-evaluation-of-radiomics-research-clear
not defined in this paper's own words; comparison source for external validation
benchimol2015-record-routinely-collected-health-data
The risk of misclassification bias in studies using routine health data, as in many other epidemiological studies, may threaten the validity of study findings [ 31 ]. Although the risk of misclassification is amplified in studies using databases containing large populations, such studies offer an opportunity to study rare or uncommon diseases [ 32 ]. Validation of identification methods has been i
not defined in this paper's own words; limits derived from a population in good health - what the paper says the field needed and did not have
forget2017-what-is-the-normal-value-of-the-ne
However, which NLR value is correlated with a higher risk for these patients? Which cut-off value, for the NLR, will discriminate normal from abnormal results? Different values of NLR, with different methods, in different populations (cancerous or not) are cited in the literature. And finally, no universal value is currently available. Therefore, there is a need for reference values to progress in
not defined in this paper's own words; published, consensus, or manually checked targets for automated tests
moriwaki2018-mordred-molecular-descriptor-calculator
Most descriptor calculation software programs do not include automated tests to check descriptor values in a distribution package. In Mordred, all descriptors are automatically tested to verify whether Mordred can calculate precise results using the reference values of the molecular descriptors. The reference values were collected from published studies, consensual findings of multiple descriptor-
not defined in this paper's own words; local pose optimization after sampling
mcnutt2021-gnina-molecular-docking-deep-learning
Following the completion of Monte Carlo sampling, the saved conformations from each Monte Carlo chain are aggregated and the num_mc_saved top scoring conformations are retained for further analysis. The top scoring conformations are then refined. If an empirical scoring function is specified for refinement (cnn_scoring set to “none” or “rescore”), a functional formulation, rather than a grid appro
refinement=the process of fine tuning or making changes to the intervention once a preliminary version (prototype) has been developed
skivington2021-complex-interventions-framework
Refinements should be guided by the programme theory, with acceptable boundaries agreed and specified at the beginning of each research phase, and with transparent reporting of the rationale for change.
Reflexivity requires researchers to analyze our everyday participation in the structural production of social and health inequities, including how we are advantaged or penalized within various institutions by status quo power relations.
wesp2019-intersectionality-transgender-health
the awareness and critical examination of biases and assumptions by the researcher throughout the study
rahimi2024-saturation-qualitative-research
Regression methods link the spectrum to quantifiable properties of the samples.
turkerkaya2017-a-review-of-mid-infrared-and-near
not defined in this paper's own words; the class ST-GPR belongs to
ferrari2024-global-burden-371-diseases
For most diseases and injuries, prevalence and incidence were modelled using DisMod-MR 2.1 (Disease Modelling Meta-Regression; version 2.1). DisMod-MR 2.1 is a Bayesian disease modelling meta-regression tool that generates internally consistent estimates of prevalence, incidence, remission, and mortality by sex, location, year, and age group. The tool also produced these measures for locations wit
if a formula was derived just before a subproof, it still holds under the subproof's assumption
holliday2023-fundamental-nonclassical-logic
Our introduction and elimination rules for ∧ and ∨ and our elimination rule for ¬ match those of Fitch [14]. However, our introduction rule for ¬ is not exactly the same as his. Our ¬ introduction rule says that if from the assumption of φ, you derive the negation of another formula derived just before the assumption, then conclude ¬ 𝜑 . This formulation of ¬ introduction is admissible in Fitch’s
not defined in this paper's own words; Fitch's rule carrying an earlier formula into a later subproof
holliday2023-fundamental-nonclassical-logic
The point can be made in an illuminating way in a Fitch-style natural deduction system [13,14]. Figure 1 shows a Fitch-style natural deduction of the absurd (3) above from the banal (2). The “mistake” in the proof lies in the Reiteration steps on lines 7 and 11: we should not be allowed to reiterate the assumption that might ¬ 𝑝 into a subproof where we have just assumed p or reiterate the assumpt
not defined in this paper's own words; a database of linked tables connected by identifiers
johnson2016-mimic-iii-critical-care-database
MIMIC-III is a relational database consisting of 26 tables (Data Citation 1). Tables are linked by identifiers which usually have the suffix ‘ID’. For example, SUBJECT_ID refers to a unique patient, HADM_ID refers to a unique admission to the hospital, and ICUSTAY_ID refers to a unique admission to an intensive care unit.
not defined in this paper's own words; MySQL-managed form of the backend knowledgebase
zhou2019-metascape-systems-level-datasets
Metascape is a web resource compatible with all major browsers. The backend knowledgebase is a relational database managed by MySQL. The front-end user interface is implemented by Angular JavaScript framework to provide a rich interactive user experience. The server-side computational logic is mostly implemented in Python and leverages several packages provided by the community ( https://pypi.org
not defined in this paper's own words; the index the regional estimates are treated as, not absolute abundance
cheeseman2024-humpback-whale-population-modelling
Because that assumption was not evaluated in the scope of this study, we treated our estimates as an index of relative abundance.
not defined in this paper's own words; fraction of a gene's transcripts assigned to scrambled isoforms
salzman2012-circular-rnas-are-the-predominant
We estimated the abundance of scrambled isoforms relative to their canonical linear counterparts by two genome-wide statistical methods. For the first estimate, we counted paired-end reads in which one read mapped to a scrambled junction (a junction between exon-X and exon-Y where X≥Y), and the other read also mapped in an orientation and position consistent with the hypothetical scrambled transcr
not defined in this paper's own words; belief and practice varying within national culture
colzato2008-religion-controls-visual-attention
In sum, given that real-life objects and events are commonly complex and hierarchically structured, so that their perceptual organization and semantic interpretation often hinges on the aspect or level an observer attends to, it seems possible that religious beliefs may indeed lead to different and sometimes discrepant and incompatible interpretations of the same incident. That this can happen is
religion involves structured traditions, doctrines, and communal practices
teixeira-pinto2026-spiritual-intelligence-concept
An interesting phenomenon in monkey ITC is called ‘repetition suppression’: when the presentation of a novel stimulus is repeated several times, ITC neurons decrease the strength of their response
Rey2015-single-cell-recordings-in-the-human-medial-t
The screening data used in the study of Pedreira and colleagues had only six presentations of the stimuli. Although a response modulation with stimulus repetition was evident, the stability of these representations over several trials could not be addressed, as it was hard to see a steady state in the response strength. Therefore, the question of whether the response would end up reaching a baseline level after a sufficient number of repetitions remained open.
Rey2015-single-cell-recordings-in-the-human-medial-t
not defined in this paper's own words; independent repetition central to cumulative science
sandve2013-ten-simple-rules-reproducible-computational-research
Replication is the cornerstone of a cumulative science [1] . However, new tools and technologies, massive amounts of data, interdisciplinary approaches, and the complexity of the questions being asked are complicating replication efforts, as are increased pressures on scientists to advance their research [2] . As full replication of studies on independently collected data is often not feasible, th
not defined in this paper's own words; repeating studies to reinforce trust in results
munafo2017-manifesto-reproducible-science
The field of metascience (or metaresearch) is growing rapidly, with over 2,000 relevant publications accruing annually 16 . Much of that literature constitutes the evaluation of existing practices and the identification of alternative approaches. What was previously taken for granted may be questioned, such as widely used statistical methods; for example, the most popular methods and software for
not defined in this paper's own words; reproduction enabled by complete reporting
page2021-prisma-systematic-review-reporting-guideline
Use of PRISMA 2020 has the potential to benefit many stakeholders. Complete reporting allows readers to assess the appropriateness of the methods, and therefore the trustworthiness of the findings. Presenting and summarising characteristics of studies contributing to a synthesis allows healthcare providers and policy makers to evaluate the applicability of the findings to their setting. Describing
a self-contained HTML artifact combining statistics and visualizations across samples
ewels2016-multiqc-analysis-results
MultiQC generates a single s elf-contained HTML report which can be shared and opened in any modern web browser. Reports render plots using the JavaScript plotting library HighCharts ( http://www.highcharts.com ). Plots are resizeable and interactive, some with click and drag zooming. Samples can be renamed, hidden and highlighted using a report toolbox. Plots can be exported in a range of publica
not defined in this paper's own words; document supplying study information
page2021-prisma-systematic-review-reporting-guideline
Report —A document (paper or electronic) supplying information about a particular study. It could be a journal article, preprint, conference abstract, study register entry, clinical study report, dissertation, unpublished manuscript, government report, or any other document providing relevant information
outcome reporting bias: outcomes going unreported within a study that was itself published
moher2009-prisma
Selective reporting of complete studies (e.g., publication bias) [28] as well as the more recently empirically demonstrated “outcome reporting bias” within individual studies [40] , [41] should be considered by authors when conducting a systematic review and reporting its results.
not defined in this paper's own words; selection of analysis results for reporting based on their significance
greenland2016-statistical-tests-p-values-confidence-intervals-power
Less often stated is the even more crucial assumption that the analyses themselves were not guided toward finding nonsignificance or significance (analysis bias), and that the analysis results were not reported based on their nonsignificance or significance (reporting bias and publication bias). Selective reporting renders false even the limited ideal meanings of statistical significance, P values
not defined in this paper's own words; recommendations for transparent review reports
page2021-prisma-systematic-review-reporting-guideline
The Preferred Reporting Items for Systematic reviews and Meta-Analyses (PRISMA) statement, published in 2009, was designed to help systematic reviewers transparently report why the review was done, what the authors did, and what they found. Over the past decade, advances in systematic review methodology and terminology have necessitated an update to the guideline. The PRISMA 2020 statement replace
not defined in this paper's own words; what CHEERS is, as opposed to a tool to assess the quality of methods
husereau2022-cheers-2022-statement
CHEERS has also been observed to be used inappropriately, as a tool to assess quality of methods, for which other tools exist [ 20 ], rather than the quality of reporting [ 5 ].
not defined in this paper's own words; ACCORD's kind, set against a methodological guideline
gattrell2024-accord-consensus-reporting
ACCORD is a reporting guideline that provides a checklist of items that we recommend are included in any scientific publication in healthcare reporting the results of a consensus exercise. However, it is not a methodological guideline.
not defined in this paper's own words; standard addressing poor systematic-review reporting
page2021-prisma-systematic-review-reporting-guideline
The Preferred Reporting Items for Systematic reviews and Meta-Analyses (PRISMA) statement published in 2009 (hereafter referred to as PRISMA 2009) 4 5 6 7 8 9 10 is a reporting guideline designed to address poor reporting of systematic reviews. 11 The PRISMA 2009 statement comprised a checklist of 27 items recommended for reporting in systematic reviews and an “explanation and elaboration” paper 1
not defined in this paper's own words; structured guidance about information that research articles should provide
kilkenny2010-arrive-guidelines-reporting-animal-research
Evidence provided by reviews of published research suggests that many researchers and peer reviewers would benefit from guidance about what information should be provided in a research article. The CONSORT Statement for randomised controlled clinical trials was one of the first guidelines developed in response to this need [24] , [25] . Since publication, an increasing number of leading journals h
not defined in this paper's own words; standards intended to improve completeness and transparency of research reports
munafo2017-manifesto-reproducible-science
Improving the quality of reporting. Pre-registration will improve discoverability of research, but discoverability does not guarantee usability. Poor usability reflects difficulty in evaluating what was done, in reusing the methodology to assess reproducibility, and in incorporating the evidence into systematic reviews and meta-analyses. Improving the quality and transparency in the reporting of r
not defined in this paper's own words; quality of randomized-trial reports improved but not fully solved by earlier CONSORT versions
schulz2010-consort
Randomised controlled trials, when appropriately designed, conducted, and reported, represent the gold standard in evaluating healthcare interventions. However, randomised trials can yield biased results if they lack methodological rigour [1] . To assess a trial accurately, readers of a published report need complete, clear, and transparent information on its methodology and findings. Unfortunatel
not defined in this paper's own words; quality of reporting that recommendations can improve
vonelm2007-strobe
Recommendations on the reporting of research can improve reporting quality. The Consolidated Standards of Reporting Trials (CONSORT) Statement was developed in 1996 and revised 5 years later [ 12 ]. Many medical journals supported this initiative [ 13 ], which has helped to improve the quality of reports of randomised trials
not defined in this paper's own words; clarity and completeness that determine whether readers can assess a review
moher2009-prisma
Systematic reviews and meta-analyses have become increasingly important in health care. Clinicians read them to keep up to date with their field [1] , [2] , and they are often used as a starting point for developing clinical practice guidelines. Granting agencies may require a systematic review to ensure there is justification for further research [3] , and some health care journals are moving in
not defined in this paper's own words; shared storage for version-controlled project history
wilson2014-best-practices-scientific-computing
The standard solution in both industry and open source is to use a version control system (3b) (VCS) [27] , [47] . A VCS stores snapshots of a project's files in a repository (or a set of repositories). Programmers can modify their working copy of the project at will, then commit changes to the repository when they are satisfied with the results to share them with colleagues.
not defined in this paper's own words; storage for versioned project states
wilson2017-good-enough-practices-scientific-computing
A version control system stores snapshots of a project's files in a repository. Users modify their working copy of the project, then save changes to the repository when they wish to make a permanent record and/or share their work with colleagues. The version control system automatically records when the change was made and by whom, along with the changes themselves.
not defined in this paper's own words; design selected to permit mechanism evaluation under practical constraints
lewis2018-classification-causality-implementation-mechanisms
We argue for greater precision in use of terms for factors implicated in implementation processes; development of guidelines for selecting research design and study plans that account for practical constructs and allow for the study of mechanisms; psychometrically strong and pragmatic measures of mechanisms; and more robust curation of evidence for knowledge transfer and use.
not defined in this paper's own words; the planned structure for collecting and analyzing evidence
munafo2017-manifesto-reproducible-science
Improving methodological training. Research design and statistical analysis are mutually dependent. Common misperceptions, such as the interpretation of P values 31 , limitations of null-hypothesis significance testing 32 , the meaning and importance of statistical power 2 , the accuracy of reported effect sizes 33 , and the likelihood that a sample size that generated a statistically significant
not defined in this paper's own words; what is left after apparent statistical adjustment
davies2018-reading-mendelian-randomisation-st
Many epidemiological methods attempt to correct for, or minimise, observed differences in confounders between study participants. These methods can give useful evidence about causal relations if we measure enough confounders so that, after adjustment or matching, study participants who consume different amounts of alcohol are otherwise comparable. But this assumption is unverifiable; if it does no
not defined in this paper's own words; the unmeasured-factor bias the authors say they cannot exclude despite controlling many covariates
gao2020-mental-health-problems-and-social
Finally, although we did control for many covariates, we cannot exclude the possibility of some residual confounding caused by unmeasured factors.
not defined in this paper's own words; gene-wise variability estimates under moderation
ritchie2015-limma-differential-expression
The highly parallel nature of gene expression experiments lends itself to a particular class of statistical methods, called parametric empirical Bayes, that borrow information between genes in a dynamic way ( 14 , 15 ). The fact that the same linear model is fitted to each gene allows us to borrow strength between genes in order to moderate the residual variances ( 16 ). The estimated variance for
not defined in this paper's own words; unexplained item variation considered during factor extraction
boateng2018-best-practices-developing-validating-scales
Factor extraction is the phase in which the optimal number of factors, sometimes called domains, that fit a set of items are determined. This is done using factor analysis. Factor analysis is a regression model in which observed standardized variables are regressed on unobserved (i.e., latent) factors. Because the variables and factors are standardized, the bivariate regression coefficients are al
not defined in this paper's own words; never developing psychopathology after adversity - split from `recovery` by Yehuda
southwick2014-resilience-definitions-theory-and
began to make a distinction in the non-PTSD group between resistance (e.g., survivors who did not develop psychopathology) and recovery (e.g., survivors who did develop PTSD, or other symptoms, but who no longer had those symptoms). This got me thinking that resistance depicted as never developing symptoms to adversity is not the same thing at all as having symptoms and bouncing back.
the degree of change or transformation a complex system can withstand while preserving its functional and structural characteristics
moya2022-social-resilience-definition
`a difficult and possibly contentious question (particularly with referees of papers)` - and `We cannot set definite rules for this, as it depends on what the data are to be used for`
evans2013-how-good-are-my-data-and-what-is-t
The effective ‘resolution’ of a data set is a difficult and possibly contentious question (particularly with referees of papers) and this is discussed in the light of tests comparing the data-processing statistics with trials of refinement against observed and simulated data, and automated model-building and comparison of maps calculated with different resolution limits. These trials show that add
not defined in this paper's own words; effective information limit of a measured diffraction data set
evans2013-how-good-are-my-data-and-what-is-t
The new scaling program AIMLESS is described and tests of refinements at different resolutions are compared with analyses from the scaling step. Following integration of the observed diffraction spots, the process of ‘data reduction’ initially aims to determine the point-group symmetry of the data and the likely space group. This can be performed with the program POINTLESS . The scaling program th
not defined in this paper's own words; prior-knowledge collections of intercellular interactions
dimitrov2022-cell-cell-communication-inference
We then examine all possible combinations of methods and resources and show that both strongly influence the predicted intercellular interactions.
not defined in this paper's own words; time and budget feasibility for the main study
thabane2010-a-tutorial-on-pilot-studies-the-what
In general, the rationale for a pilot study can be grouped under several broad classifications - process, resources, management and scientific (see also http://www.childrens-mercy.org/stats/plan/pilot.asp for a different classification): • Process: This assesses the feasibility of the steps that need to take place as part of the main study. Examples include determining recruitment rates, retention
psychological and physical assets that can be drawn on during the process of behavioural regulation
kwasnicka2016-behaviour-change-maintenance-theories
Response latency was determined from PSTH as the time point when the activity exceeded the average baseline (measured in the time window of 900–1000 ms after stimulus onset) by three standard deviations of baseline fluctuations.
Xiao2018-septal-and-hippocampal-neurons-contribute-to
not defined in this paper's own words; time between successive posts
lindstrom2021-reward-learning-social-media-engagement
Second, we defined a high resolution measure of response latency ( τ Post ) as the time between two successive social media posts (similar to the interval between responses in human laboratory tasks and in animal free-operant behavior, see Fig. 1 ), and tested whether τ Post was predicted by the history of likes using Granger causality analysis (see Methods). Granger causality is established if a
Response threshold was the minimum stimulus intensity that could induce a sound-evoked spike in a neuron.
Xiao2018-septal-and-hippocampal-neurons-contribute-to
We first measured PNs’ response threshold, the sound level which elicits a significant response.
Kumar2023-cell-type-specific-plasticity-of-inhibitory
an abstract concept believed to feed a range of outcomes
rise2019-addiction-moral-responsibility
Responsibility is a rather abstract concept believed to contribute to a range of outcomes (e.g., Weiner, 1995 , 2006 ; Halkjelsvik and Rise, 2014 ).
an accountability in terms of behaviours and thought processes
joynes2018-professional-identity-interprofessional
not defined in this paper's own words; a known repressor that appears to correlate with activating transcription factors until the blacklist is applied
amemiya2019-the-encode-blacklist-identificatio
As a specific example, the correlation of REST (a known repressor) auto correlates with other TFs (most of them activating) without the filtering of the blacklist. The removal of the blacklist regions removes spurious correlations seen with REST has essentially disappeared as would be expected given the known biology.
random encounter and staying time
yokoyama2020-seasonal-density-habitat-catchability
a programmatic query interface for workflow integration
sorokina2021-coconut-open-natural-products
A REST API has been developed for COCONUT online in order to permit programmatic querying and facilitate its integration in workflows. It relies on Kotlin API functionalities and it’s usage, together with some examples, is described in detail in the documentation section of the website ( https://coconut.naturalproducts.net/documentation ).
not defined in this paper's own words; programmatic query interface
sorokina2021-coconut-open-natural-products
The COCONUT database is free and open to all users and there is no login required to access it. Its web interface allows diverse simple searches (e.g. by molecule name, InChI, InChI key, SMILES, drawn structure, molecular formula), advanced search by molecular features, together with substructure and similarity searches. Users can also download the whole dataset or search results in different form
a management action that purchases degraded land and returns it toward an intact state at rate g
possingham2015-optimal-conservation-outcomes-restoration-protection
In our model, transitions of land between the four states are driven by two actions and two processes. The two actions, protection and restoration, are entirely determined by the managers. At each point in time across a T -year project, managers can allocate a varying proportion (0≤ u ( t )≤1) of a fixed annual budget ( B ) to protection, and the remainder 1— u ( t ) to restoration. We note that t
not defined in this paper's own words; conversion of degraded land toward an intact state
possingham2015-optimal-conservation-outcomes-restoration-protection
The relative priority of protection and restoration can only be coherently assessed by a conservation resource allocation theory that incorporates both actions and that quantifies both their costs and benefits in a comparable manner. In particular, this theory must be temporally explicit, since both the benefits of the two actions accrue at different rates. In this paper, we incorporate restoratio
The duration of the retention interval—the time during which the initial sound must be remembered—typically has been a few seconds.
Nees2016-have-we-forgotten-auditory-sensory-memory-re
not defined in this paper's own words; the gap between the two sounds during which the first must be held - the parameter that decides which memory the task measures
Nees2016-have-we-forgotten-auditory-sensory-memory-re
two sounds separated by a brief retention interval (often 3–5 s) are compared, and a “same” or “different” judgment is recorded
not defined in this paper's own words; its recovery, which destabilises it again
Camina2017-the-neuroanatomical-neurophysiological-and-p
Finally the hippocampus is responsible for the formation and retrieval of memories.
not defined in this paper's own words; the phase the tradition kept separate
Pereira2020-unsupervised-learning-of-persistent-and-sequ
After the learning phase , the learning of attractors is tested in a retrieval phase , where the network dynamics is ongoing but synaptic plasticity is not present.
not defined in this paper's own words; intermittent anticipated outcomes sustaining engagement
danaher2020-internet-cognitive-enhancement
For example, one of the most successful and widely used features of social media platforms, infinite scroll feeds (like Facebook’s Newsfeed) which allows users to view content without a finishing line in sight, is based on one such cognitive bias. People respond faster, more efficiently and compulsively when the rewards they received for doing a particular task are intermittent. Dopamine is releas
not defined in this paper's own words; materialized incentives delivered contingently
vlaev2019-financial-incentives-health-behavior
In clinical psychology, the contextual-change route has taken a substantial share of research, because classical behavior therapy and cognitive-behavioral therapy focus on underlying learning processes and environmental contingencies of reinforcement [ 27 , 28 ]. Schedules of contingent reinforcement are also a key to the success of rewards (materialised incentives) and often used in behavioral ps
not defined in this paper's own words; descriptor-based random-forest model
jiang2021-graph-neural-networks-molecular-representation
The present study attempts to give a comprehensive evaluation of descriptor-based and graph-based models on 11 public datasets with different property endpoints. Four ML algorithms were used to develop the descriptor-based models, including SVM, extreme gradient boosting (XGBoost), RF and deep neural networks (DNN). In order to better represent the chemical and structure features of the molecules
random forest
jeantet2020-multi-sensor-loggers-sea-turtle-behaviour
reflective functioning
ali2021-parent-child-attachment
`three grades of increasing severity of acute kidney injury - risk (class R), injury (class I) and failure (class F) - and two outcome classes (loss and end-stage kidney disease)`
hoste2006-rifle-criteria-for-acute-kidney-in
To establish a uniform definition for acute kidney injury, the Acute Dialysis Quality Initiative formulated the Risk, Injury, Failure, Loss, and End-stage Kidney (RIFLE) classification [ 11 ]. RIFLE defines three grades of increasing severity of acute kidney injury – risk (class R), injury (class I) and failure (class F) – and two outcome classes (loss and end-stage kidney disease)
not defined in this paper's own words; the consensus staging system: three severity grades and two outcome classes
hoste2006-rifle-criteria-for-acute-kidney-in
The RIFLE classification is a very sensitive definition of acute kidney injury: acute kidney injury defined by the RIFLE classification occurred in two thirds of general ICU patients.
proliferation of rights that weakens their distinction and effectiveness
bublitz2022-novel-neurorights-nonsense-substance
Let us begin with first impressions. To ears of human rights scholars, calling for no less than five novel rights to be added to the international lists might appear bold. Human rights are the most fundamental, abstract, and universal legal guarantees. Existing rights revolve around existential issues such as life and liberty, equal treatment, access to water. Although the lists of rights steadily
not defined in this paper's own words; unjustified proliferation that weakens human-rights claims
ienca2021-on-neurorights
The second and most pressing question is to determine whether neurorights in the sense of international human rights law are to be interpreted as brand new human rights or as evolutionary interpretations of existing rights. Two problem-solving principles may offer guidance in this regard. First, as we have seen, Occam’s razor or law of parsimony requires that entities should not be multiplied with
RNA-induced silencing complex
kaczmarek2017-rna-therapeutics-delivery
reverse ISC
kaji2015-purely-organic-electroluminescent-material
not defined in this paper's own words; biological or environmental factors statistically associated with language disorder whose causal role is unclear - recorded, and NOT exclusionary
bishop2017-phase-2-of-catalise-a-multinationa
Rather than using exclusionary criteria in the definition of language disorder, we draw a threefold distinction between differentiating conditions, risk factors and co‐occurring conditions.
not defined in this paper's own words; proximate exposures whose future trends are mostly omitted from the projection model
mathers2006-projections-global-mortality-burden-disease
The projections have also not taken explicit account of trends in major risk factors apart from tobacco smoking, and, to a limited extent, overweight and obesity. If broad trends in risk factors are for worsening of risk exposures with development, rather than the improvements observed in recent decades in many high-income countries, then again the projections for low- and middle-income countries
not defined in this paper's own words; distance from predicted pose to binding pose
mcnutt2021-gnina-molecular-docking-deep-learning
TopN : We evaluate docking performance by examining the output poses. The Open Babel obrms tool [ 42 , 43 ] is used to determine the RMSD from each output pose to the binding pose. In redocking, the binding pose is defined by the crystal pose. In cross-docking, we define the binding pose as the conformation of the ligand when the cognate protein structure is aligned with the reference structure. I
not defined in this paper's own words; the abbreviation for root-mean-square deviation
hoja2021-qm7x-quantum-mechanical-properties
At the MMFF94 level, we retained the set of conformers that were within 50 kcal/mol of the most stable structure and differed by a root-mean-square deviation (RMSD) of 0.5 Å.
not defined in this paper's own words; abbreviation for RNA sequencing
ritchie2015-limma-differential-expression
Recently, the capabilities of limma have expanded significantly in two important directions. First, the package can now perform both differential expression (DE) and differential splicing analyses of RNA sequencing (RNA-seq) data ( 7 , 8 ). All the downstream analysis tools previously restricted to microarray data are now available for RNA-seq as well. These capabilities allow users to analyse bot
not defined in this paper's own words; sequencing-based expression data sensitive to lowly expressed genes
szklarczyk2022-string-database
RNA-Seq datasets have increased sensitivity for genes exhibiting low levels of expression ( 69 , 70 ). This combined with improved performance and the high-throughput nature of the experimental data reduces the inherent literature bias of the STRING network.
an operational plasma-RNA definition rather than proof of culturable virus
roltgen2020-defining-the-features-and-duration
A volume of 400 μL of EDTA-anticoagulated plasma was extracted by Qiagen EZ1 Virus Mini Kit v2.0 (Qiagen Germantown, MD). Molecular testing for the presence of SARS-CoV-2 RNA in plasma was performed with a modification of a published rRT-PCR assay targeting the envelope ( E ) gene ( 46 , 47 ). The standard Ct values of positive tests with this assay range from Ct <20 to 45 cycles. Testing of plasm
not defined in this paper's own words; defined presence of SARS-CoV-2 RNA in plasma
roltgen2020-defining-the-features-and-duration
Viral RNAemia is detected in up to a third of COVID-19 patients, most often in patients with severe disease ( 3 , 31 ). RNAemia was evaluated in a subset of patients, and detected in 15 of 25 admitted patients, 13 of 15 ICU patients who recovered, and 2 of 2 patients who died of their disease. Reduction in RNAemia was strongly correlated with the appearance of plasma antibodies (Spearman’s correla
not defined in this paper's own words; 3-prime-to-5-prime exoribonuclease used to challenge transcripts
salzman2012-circular-rnas-are-the-predominant
We used susceptibility to RNaseR as a biochemical assay for the topology of the RNA molecules containing scrambled exons. RNaseR is a 3′ to 5′ exoribonuclease that degrades essentially all linear RNA molecules, regardless of structure, provided the RNA contains a 7 bp 3′ overhang [23] . To optimize the efficiency of RNaseR digestion, HeLa RNA was first depleted of ribosomal RNA and then subjected
not defined in this paper's own words; the exonuclease that digests linear RNA and spares circles - the discriminating assay
salzman2012-circular-rnas-are-the-predominant
transcripts with scrambled exons were generally resistant to RNaseR treatment, as expected for circular RNAs, but not for RNAs with scrambled exons generated by template switching or other artifacts of reverse transcription from a canonical linear RNA.
a graphical interpretation for the performance of a classifier
ehsan2018-signal-peptide-classification-model
receiver-operator curve
litjens2016-deep-learning-histopathology
not defined in this paper's own words; error between actual and predicted ages
tustison2021-antsx-imaging-ecosystem
Root mean square error (RMSE) between the actual and predicted ages are the quantity used for comparative evaluation.
not defined in this paper's own words; the square root of the mean squared deviation between estimates and measurements
noor2013-gibbs-energy-component-contributions
Comparison of to gave a root mean square error (RMSE) of 2.7 kJ/mol for iAF1260, and 3.1 kJ/mol for Recon 1.
scholarly rumour here: one presenting causality and falsely based on research
allily2018-public-temper-rumours-ethnography
It concentrates on what could be called ‘scholarly rumours’, which are defined in the current article in two ways. First, they are rumours that present causality, in that they show relationships between causes and effects. Second, they are rumours falsely based on research and experimentation.
what seeks to be believed
allily2018-public-temper-rumours-ethnography
liquid supply in excess of ET0 use and soil recharge
abatzoglou2018-terraclimate-high-resolution-global-dataset
A one-dimensional modified Thornthwaite-Mather climatic water-balance model (WBM) 22 , 31 was used to calculate monthly water balance from 1958–2015. The WBM is a single bucket model applied consistently across global land surfaces that operates on a monthly time step and considers the interplay between precipitation, ET 0 , as well as soil and snowpack water storage. The WBM accounting scheme con
not defined in this paper's own words; surface-water output estimated by the WBM
abatzoglou2018-terraclimate-high-resolution-global-dataset
In addition to temperature and precipitation, there has been interest in measures of climate that are more directly linked to ecosystem productivity and water resources. Water balance models integrate climate and biophysical factors to produce a set of variables that account for the concurrence of water and energy. Water balance models have been used to estimate runoff 16 , 17 , ecosystem producti
a normalized one-to-ten estimate from fragment frequency, size, and complexity
daina2017-swissadme-free-web-tool
SwissADME Synthetic Accessibility (SA) Score is based primarily on the assumption that the frequency of molecular fragments in ‘really’ obtainable molecules correlates with the ease of synthesis. The fragmental contribution to SA should be favourable for frequent chemical moieties and unfavourable for rare moieties. We examined the ‘All Now’ subset of ZINC database 76 (version 12, 2014, http://zin
not defined in this paper's own words; normalized synthetic-accessibility score
daina2017-swissadme-free-web-tool
One of the key aspects of CADD activities is to help the selection of the most promising virtual molecules that will be synthetized and submitted to biological assays or other experiments. Synthetic accessibility (SA) is a major factor to consider in this selection process. Obviously, for a reasonable number of molecules, medicinal chemists are the best able to determine SA. However, when too many
not defined in this paper's own words; search over conformational space
mcnutt2021-gnina-molecular-docking-deep-learning
Molecular docking is a computational procedure in which the non-covalent bonding of molecules, e.g. a protein receptor and a ligand, is predicted. This prediction outputs the conformation and, usually, the binding affinity of the small molecule in its predicted minimal energy state and is used to virtually screen large libraries of compounds [ 1 – 3 ]. Docking is composed of two main steps: sampli
not defined in this paper's own words; number of independent measurements contributing to reliability assessment
sorkun2019-aqsoldb-aqueous-solubility-descriptors
Statistically, due to the fact that when sampling increases, reliability will increase, it can be concluded that G5 group is more reliable than G3 group and G4 group is more reliable than G2 group.
not defined in this paper's own words; related severe acute respiratory syndrome coronavirus
roltgen2020-defining-the-features-and-duration
The virus causing COVID-19 belongs to the Sarbecovirus subgenus (genus Betacoronavirus ) together with the severe acute respiratory syndrome coronavirus (SARS-CoV) and has been designated SARS-CoV-2 ( 9 ). Coronaviruses contain four structural proteins, including spike, envelope, membrane, and nucleocapsid (N) proteins. The spike surface glycoprotein contains the receptor binding domain (RBD), whi
not defined in this paper's own words; the 2002-2003 pandemic coronavirus used as the reference comparator
wu2020-new-coronavirus-respiratory-disease-china
To determine the evolutionary relationships between WHCV and previously identified coronaviruses, we estimated phylogenetic trees on the basis of the nucleotide sequences of the whole-genome sequence, the non-structural protein genes ORF1a and ORF1b , and the main structural proteins encoded by the S , E , M and N genes (Fig. 2 and Extended Data Fig. 5 ). In all phylogenies, WHCV clustered with me
simultaneous analysis of concepts
tavares2022-spiritual-comfort-support-care
simultaneous concept analysis
martins2024-spiritual-distress-hopelessness
not defined in this paper's own words; the capacity of Galaxy's interface and backend to handle growing datasets, tasks, and users
afgan2018-galaxy-platform-accessible-reproducible-collaborative
Scalability is amongst the most significant challenges that Galaxy faces as the size and number of biomedical and especially genomics datasets continues to grow. For instance, single-cell RNA-seq experiments routinely generate hundreds or thousands of primary datasets. As a web-based application, Galaxy must scale both in its web-based interface and on its backend server and do so in a multiuser e
the capacity or ease with which an intervention or innovation that had been proven effective could be expanded to other settings or populations
klaic2022-implementability-healthcare-interventions
not defined in this paper's own words; short-chain fatty acids linked to barrier effects
rinninella2019-what-is-the-healthy-gut-microbiota
Daily exercise increases gut microbial diversity ( Table 2) with a Firmicutes enrichment microbiota: _Clostridiales, Roseburia, Lachnospiraceae_, and _Erysipelotrichaceae_ by producing more SCFAs which may increase the expression of tight junction proteins in colon epithelia to heighten the resistance of the intestinal barrier, reduce mucosal permeability, and inhibit inflammatory cytokines
not defined in this paper's own words; short-chain fatty acids made when gut microbes ferment prebiotics
davanidavari2019-prebiotics-definition
SCFAs decrease the pH of colon [ 14 , 15 ].
not defined in this paper's own words; evidence-based construction of testable explanations and predictions
lewis2018-classification-causality-implementation-mechanisms
The National Academy of Science defines “science” as “the use of evidence to construct testable explanations and predictions of natural phenomena, as well as the knowledge generated through this process.” ( 8 ) The field of implementation has spent the past two decades building and organizing knowledge, but we are far from having testable explanations that afford us the ability to generate predict
not defined in this paper's own words; the domain often opposed to art, which the essay argues instead sustains it
can-computers-create-art
I argue that new technologies benefit art and artists, creating new tools and modes of expression, and new styles of expression. Sadly, art and science are often viewed as being separate, or, even, in opposition (Snow 1959). Yet, technological development stimulates so much of the continued vitality of art, and new artistic technologies create new job opportunities. Our new AI technologies follow
a projectible classificatory category that grounds inductive inference and explanation in a scientific discipline
crane2021-two-approaches-natural-kinds
Philosophical treatments of natural kinds are embedded in two distinct projects. I call these the philosophy of science approach and the philosophy of language approach. Each is characterized by its own set of philosophical questions, concerns, and assumptions. The kinds studied in the philosophy of science approach are projectible categories that can ground inductive inferences and scientific exp
not defined in this paper's own words; a projectible category grounding induction and explanation
crane2021-two-approaches-natural-kinds
Hacking (2007) claims that contemporary philosophers use the term “natural kind” in so many ways that it no longer refers to any well-defined class. He believes the literature has devolved into a “scholastic twilight” from the “heady days of the 1970s when Saul Kripke and Hilary Putnam did so much to give sense and use to the idea of a natural kind” (p. 227). In my view the contemporary literature
not defined in this paper's own words; Pawson's more pragmatic school of realism
dalkin2015-realist-mechanism-concept
We acknowledge the further cleft between ‘critical realism’ and ‘scientific realism’. The writings of Bhaskar [ 8 , 11 ] and Pawson [ 2 ] serve as a reasonable proxy for these two schools. They differ on the matter of whether social science can create ‘closed system’ investigations.
not defined in this paper's own words; true theories and their categories are responsive to the world
crane2021-two-approaches-natural-kinds
The dominant accounts in the philosophy of science approach reject the mind-independent natural joints characteristic of natural kind realism; consequently, the kinds they identify do not have the sort of metaphysical structures that can ground rigid designation. The move toward pluralism, and toward accepting discipline-relative kinds, crosscutting kinds, functional kinds, and multiply realizable
not defined in this paper's own words; open-source scientific-computing software library
virtanen2020-scipy-fundamental-algorithms-scientific-computing
SciPy is an open-source scientific computing library for the Python programming language. Since its initial release in 2001, SciPy has become a de facto standard for leveraging scientific algorithms in Python, with over 600 unique code contributors, thousands of dependent packages, over 100,000 dependent repositories and millions of downloads per year. In this work, we provide an overview of the c
not defined in this paper's own words; scientific-algorithm library coupled to NumPy
harris2020-array-programming-numpy
SciPy and Matplotlib are tightly coupled with NumPy in terms of history, development and use. SciPy provides fundamental algorithms for scientific computing, including mathematical, scientific and engineering routines. Matplotlib generates publication-ready figures and visualizations. The combination of NumPy, SciPy and Matplotlib, together with an advanced interactive environment such as IPython
defined 17 Sustainable Development Goals (SDGs)
kobalgrum2022-social-sustainability-workplace
sustainable development goals
boakye2024-nursing-education-sustainable-development
not defined in this paper's own words; here, the frequency of anomalously warm events
halpern2019-ocean-human-impact-pace
At the global scale, increases in the frequency of anomalously high sea surface temperature (SST) events account for about 75% of the observed increase in CHI (Fig. S9 , Table S7 ), and ocean acidification is the next fastest increasing impact, explaining an additional 16% of the increase in CHI (Table S7 ).
not defined in this paper's own words; one of the climate change drivers
halpern2015-cumulative-human-impacts-ocean
For climate change drivers (sea surface temperature (SST) and ultraviolet anomalies and changes in ocean acidification), this assumption is reasonable given the scale at which those drivers act.
a feeling of warmth and protection instilled by the presence of familiar and trustworthy individuals, combining notions of intimacy and safety
a-functional-model-of-kitsch-and-art-linking
Probably the most important variable for attachment behavior is security ( Bowlby, 1969 ). It can be defined as a feeling of warmth and protection that is instilled by the presence of familiar and trustworthy individuals ( Schneider, 2001 ). Security hereby combines notions of intimacy and safety. Therefore, the security system regulates a need for safety (see [3] in Figure 3 ) as well as a need f
not defined in this paper's own words; safeguard required for medically sensitive genomic data
stephens2015-genomical
new methods of data reliability and security are required to ensure privacy, much more so than for the other three domains. A serious breach of medically sensitive genomic data would have permanent consequences and could seriously hinder the development of genomic medicine. Homomorphic encryption systems, in which encrypted data can be analyzed and manipulated for certain controlled queries withou
`any waking behaviour characterized by an energy expenditure <=1.5 METs WHILE IN A sitting or reclining posture` - 558 Scopus citations by March 2017, and one article still claiming there is no real consensus
tremblay2017-sedentary-behavior-research-networ
The definition of sedentary behavior as “any waking behaviour characterized by an energy expenditure ≤1.5 METs while in a sitting or reclining posture,” proposed by SBRN [ 25 ] was widely adopted as evidenced by frequent citations (558 according to SCOPUS, March 20, 2017), though at least one article claimed that there is still not a real consensus on the definition
not defined in this paper's own words; time spent sitting or inactive
zhang2025-physical-activity-health-literacy
Psychological stress leads to reduced physical activity and increased sedentary behavior
not defined in this paper's own words; low-activity waking behaviour addressed as a health exposure
bull2020-world-health-organization-physical-activity-sedentary-behaviour-guidelines
This paper reports on the development of new WHO guidelines on physical activity and sedentary behaviour. 5 These guidelines provide evidence-based public health recommendations concerning the amount (frequency, intensity, duration) and types of physical activity that offer significant health benefits and mitigate health risks (for definitions see table 1 ). These guidelines have been developed fo
not defined in this paper's own words; the term this project exists to define, at <=1.5 METs in a sitting or reclining posture
tremblay2017-sedentary-behavior-research-networ
In 2012, the Sedentary Behaviour Research Network (SBRN; a network connecting sedentary behavior researchers and health professionals from around the world interested in sedentary behavior research [ 24 ]) published a letter proposing definitions aimed at clarifying differences between “sedentary behaviour” and “physical inactivity” [ 25 ]. This clarification, authored by 52 SBRN members, achieved
not defined in this paper's own words; splitting denitrification steps across different organisms
lawson2017-anammox-metabolic-network
Indeed, the segregation of denitrification intermediates across different organisms has been shown to reduce the accumulation of growth-inhibiting metabolites (for example, nitrite) and potentially accelerate denitrification rates 46 .
not defined in this paper's own words; what the priming period improves - the separation of overlapping sounds into discrete objects, which the abstract frames as the auditory system's central task
Sollini2016-comodulation-enhances-signal-detection-via-p
Improvements in detection were largest following priming periods of noise alone, indicating that cortical segregation is enhanced over time
solid electrolyte interface
zhang2020-zinc-anode-protective-layer-orientation
solid electrolyte interphase
chen2019-nasicon-cathode-sodium-ion-batteries
not defined in this paper's own words; episodes of motor, autonomic or behavioural disturbance
berendt2015-veterinary-epilepsy-definition
Epilepsy is a complex brain disease where sudden and abnormal activity in neuronal networks causes the prominent clinical sign of seizures characterised by motor, autonomic and/or behavioural features.
not defined in this paper's own words; paroxysmal events shared by epilepsy disorders
kohler2020-the-human-phenotype-ontology-in-2021
The epilepsies are a group of diverse disorders that share a predisposition to seizures ( 20 ). They are phenotypically complex with constellations of clinical features indicating different age-specific syndromes, broad epilepsy types, and etiologies that guide clinical management ( 21 ). We have recently demonstrated that phenotypic similarity approaches based on HPO-related phenotypes in the epi
selection of one stimulus for response among competing stimuli
williams2020-struggle-human-attention
The stages propose a classification of research into three major fields. The first one is selective attention, which identifies attention as a process of the selection of stimuli. The second one is divided attention, which studies the response capacity of the subject to several simultaneous tasks. The third one is sustained attention, which examines the ability to retain attention for an amount of
the ability to process a certain part of sensory input while omitting others
varpaei2024-postoperative-cognitive-dysfunction
a coherent collective that owns memories and preferences and pursues goals unavailable to any component alone
levin2022-technological-approach-mind-everywhere
• Self—a coherent system emerging within a set of integrated parts that serves as the functional owner of associations, memories, and preferences, and acts to accomplish goals in specific problem spaces where those goals belong to the collective and not to any individual sub-component. Selves are defined by the spatio-temporal scale and nature of the types of goals they can pursue—their “cognitive
the private self versus the social self broadcast through one's choices
social-reputation-influences-on-liking
Furthermore, for art and aesthetic research as well as social psychological studies, using prestigious objects as stimuli, investigations should focus more on social mechanisms and how they lead to behavioral change. Hence, we would like to emphasize that interactions between the private self and self-image, and within a particular social context (social self), are influenced by social reputation,
not defined in this paper's own words; the ability to govern one's impulses, emotions and health behaviour
lee2021-entrapment-covid-pandemic
Self-control acts as a buffer and allows one to better cope with the stresses resulting from COVID-19, and the general psychological distress decreases when one perceives they can exercise self-control
the capacity to manage stress/conflict, via emotional balance/control, and tolerate frustration, anxiety, and stress
carvalho2022-positive-mental-health-literacy
not defined in this paper's own words; the patient's own motivation, will and hope as a force in healing
sadathoseini2023-healing-cross-cultural-concept
According to the participants, the patients themselves play a key role in their healing. One’s motivation, will and hope are crucial in healing
not defined in this paper's own words; spontaneous recovery of film and device after water exposure
zhao2016-polymer-scaffold-self-healing-perovskite
Moreover, they show strong humidity resistant and self-healing behaviour, recovering rapidly after removing from water vapour.
the film and device regain phase and efficiency within about 45 s after the vapour is removed
zhao2016-polymer-scaffold-self-healing-perovskite
In contrast, the PEG scaffold perovskite film showed yellow in colour at first and recovered to black in ∼45 s after removing from the spray
a basic set of skills for handling activities that an individual must perform on a regular basis to regulate or decrease the impact of a medical condition on their lives
laranjeira2023-therapeutic-adherence-mental-disorders
not defined in this paper's own words; managing the symptoms, treatment and consequences of a chronic condition
hickmann2022-patient-engagement-empowerment-terms
Involving or participatory actions include self-management, self-care, and shared decision-making
scanning electron microscope
huang2015-conjugated-coordination-polymer-conductivity
scanning electron microscopy
kim2015-large-area-multilayer-hexagonal-boron-nitride
Structural equation modelling
ma2017-climate-warming-plant-biomass-stability
not defined in this paper's own words; memory for meanings and concepts
Camina2017-the-neuroanatomical-neurophysiological-and-p
Explicit memory consists of episodic memory (time-related events) and semantic memory (concepts and meanings).
object/source sense (an odour evokes a source object whose colour is matched) versus lexical/linguistic sense (a shared descriptive word links the senses); the review notes 'lexical' may be preferable to 'linguistic'
olfactory-colour-crossmodal-correspondences
According to the lexical/semantic account of crossmodal correspondences, sensory qualities might come to be associated because of the use of common lexical terms used to describe them, as when one talks of a 'sharp' cheese, or a ‘loud’ pair of bright red trousers (Spence, 2018a ). The semantic coding account of the crossmodal correspondences, originally suggested by Martino and Marks ( 1999 , 2000
executive processes that regulate the activation and context-sensitive use of semantic knowledge
jefferies2024-multidisciplinary-semantic-glossary
Definition : The set of executive control processes that regulate the activation and deployment of semantic knowledge. These allow flexible, context- and task-appropriate responses by ensuring that only relevant aspects of semantic representations are used to direct thought and behavior.
not defined in this paper's own words; context-sensitive selection and retrieval of meaning
dove2022-social-semantics-abstract-concepts
Consistent with this, some individual neuroimaging studies reported greater activation of semantic control regions (the IFG) during the processing of social, as compared to non-social words/sentences [ 38 , 75 ] (also see [ 121 ]).
not defined in this paper's own words; computable interchange across digital medicine systems
kohler2020-the-human-phenotype-ontology-in-2021
We have developed open community resources consisting of the HPO ontology and a comprehensive corpus of disease HPO phenotype annotations (HPOA) corresponding to each of nearly eight thousand rare diseases. Together with other terminologies and classifications, the HPO and its disease annotations enable semantic interoperability in digital medicine.
not defined in this paper's own words; need for unequivocal IEI phenotype descriptions
kohler2020-the-human-phenotype-ontology-in-2021
Inborn errors of immunity (IEI), previously referred to as primary immunodeficiencies (PID), involve a variable, disorder-specific predisposition towards infections, immune dysregulation (including autoimmunity, autoinflammation, granuloma formation, lymphoproliferation, etc.), and malignancies. Phenotypes of IEI are often complex, making it difficult to distinguish primary disease-specific featur
not defined in this paper's own words; pixel-level method paired with object detection for localization
voulodimos2018-deep-learning-for-computer-vision
Object detection is the process of detecting instances of semantic objects of a certain class (such as humans, airplanes, or birds) in digital images and video ( Figure 4). A common approach for object detection frameworks includes the creation of a large set of candidate windows that are in the sequel classified using CNN features. For example, the method described in \ [32\] employs selective se
the assignment of class labels to each individual pixel of an image rather than to the whole image itself
vanvalen2016-deep-learning-live-cell-imaging
embodied and affective evaluation of interactions from an organism's situated perspective
di-paolo2020-pregnant-agencies
It is also here that sense-making begins. Sense-making is the enactive way of describing cognition in general. It does not immediately imply a sophisticated cognition or a distinction between cognition and affect, but first of all a primordial sensitivity that is affectively constituted in interaction with the organism’s environment. An adaptive organism is meaningfully affected by its interaction
not defined in this paper's own words; enactment of significance and value through viable action
van-der-schijff2018-4e-music-pedagogy-self-organization
Therefore, as Evan Thompson [ 16 ] puts it, “living is a process of sense-making, of bringing forth significance and value” (p. 158). This shift in levels, from biology to cognition, is articulated by Thompson [ 40 ] through five points. We report this passage in its entirety: Life = autopoiesis. By this I mean the thesis that the three criteria of autopoiesis—(i) a boundary, containing (ii) a mol
not defined in this paper's own words; leave-one-study-out and transformation checks of robustness
fanelli2009-scientist-misconduct-meta-analysis
The popular funnel-plot-based methods to test for publication bias in meta-analysis are inappropriate and potentially misleading when the number of included studies is small and heterogeneity is large [25] , [26] . However, the robustness of results was assessed with a sensitivity analysis. Pooled weighted estimates for effect size and regression parameters were calculated leaving out one study at
not defined in this paper's own words; recalculation under changes in higher taxa or inventory completeness
mora2011-how-many-species-earth-ocean
Increases or decreases in the number of higher taxa will affect the raw data used in our method and thus its estimates of the total number of species. The number of higher taxa can change for several reasons including new discoveries, the lumping or splitting of taxa due to improved phylogenies and switching from phenetic to phylogenetic classifications, and the detection of synonyms. A survey of
not defined in this paper's own words; agency grounded in sensorimotor coupling
baggs2020-ecological-psychology-enactivism-action
A study of infants responding to a simulated looming object (van der Weel et al., 2019 ) that measured visual evoked potentials and the orientation of electrical source flow showed connectivity patterns emerging and changing directions between trials. The same variable that can be used to describe the flow pattern of a looming object (tau, the ratio between image size and its rate of change, Lee,
regulation of environmental interaction through coordinated sensory and motor capacities
di-paolo2020-pregnant-agencies
In contrast with biological agency, sensorimotor agency is the capacity of an organism to regulate its interactions with the environment by coordinating sensory and motor capacities. In line with Di Paolo et al. (2017) , we use the term “sensorimotor regularities” to describe the predictable variations between sensory stimulation, neural, and motor activity ( Di Paolo et al., 2017 , p. 43). These
Memory “Sensory memory is the capacity for briefly retaining the large amounts of information that people encounter daily” ( Siegler and Alibali, 2005 ).
Camina2017-the-neuroanatomical-neurophysiological-and-p
not defined in this paper's own words; the first of the three main forms
Camina2017-the-neuroanatomical-neurophysiological-and-p
The three major classifications of memory that the scientific community deals with today are as follows: sensory memory, short-term memory, and long-term memory. Information from the world around us begins to be stored by sensory memory, making it possible for this information to be accessible in the future. Short-term memory refers to the information processed by the individual in a short period
“Sensory memory is the capacity for briefly retaining the large amounts of information that people encounter daily” ( Siegler and Alibali, 2005 ). There are three types of sensory memory: echoic memory, iconic memory, and haptic memory. Iconic memory retains information that is gathered through sight, echoic memory retains information gathered through auditory stimuli and haptic memory retains data acquired through touch.
Camina2017-the-neuroanatomical-neurophysiological-and-p
extraction and classification of emotional content in texts
brand2019-cultural-evolution-emotion-song-lyrics
A fruitful area of investigation concerns the analysis of emotions in human cultural expressions. Several tools have been developed to extract the emotional content of texts, known as ‘sentiment analysis’. Some of these provide a classification of how words score on ‘positive’ and ‘negative’ content (Baccianella et al . 2010 ), and others provide additional scores for specific emotions (e.g. how ‘
family of methods tracking attitudes and mood in language
jackson2021-text-thought-language-psychological-science
Sentiment analysis is actually an umbrella term to capture a range of methods.
not defined in this paper's own words; word-level classification of emotional valence
brand2019-cultural-evolution-emotion-song-lyrics
We used the ‘positive emotions’ and ‘negative emotions’ categories of the text analysis application Linguistic Inquiry and Word Count (Pennebaker et al. 2007 ). These categories are ‘virtually unchanged’ compared with the most recent (2015) version of LIWC. The words were stemmed as described above, and we analysed the lyrics with n = 267 negative emotion stems and n = 169 positive emotion stems.
not defined in this paper's own words; existence of a countable dense subset, in the crisp topological sense
alcantud2020-soft-open-bases
In the case of crisp topologies, separability amounts to the existence of a countable dense subset. Remember that when 𝛴 is a crisp topology on X, 𝑈 ⊆ 𝑋 is dense in X if its topological closure is X, i.e., if 𝐶 𝑙 ( 𝑈 ) = 𝑋 .
the property (a countable dense subset) versus the word Munkres calls an unfortunate choice of terminology, overused and distinct from the separation of separation axioms
alcantud2020-soft-open-bases
It is this alternative (and equivalent) definition of separability that we intend to extend to the realm of soft topologies. To avoid further confusion with existing literature, our two adapted versions of topological separability will avoid this term. In this we follow Munkres [2], Chapter 4, §30, who claims that the name separability is “an unfortunate choice of terminology” and “a good example
not defined in this paper's own words; infection outcome associated with HMO-sensitive pathogens
rinninella2019-what-is-the-healthy-gut-microbiota
Human milk composition depends on genetic factors and the mother’s secretor and Lewis blood groups defining four phenotypes characterized by different levels of oligosaccharide amounts \ [18\]. Higher levels of Proteobacteria and lower levels of Firmicutes are noted in premature infants of non-secretor mothers \ [19\]. A recent study by Praticò et al. \ [20\] characterizing human breast milk compo
organ dysfunction caused by a dysregulated host response to infection
jarczak2022-cytokine-storm-definition
not defined in this paper's own words; sampling depth limiting rare-isoform detection
salzman2012-circular-rnas-are-the-predominant
For more than 30 years, sporadic reports have described the presence of circular mRNA transcripts in mammals. Many of these circular RNAs were discovered serendipitously, and were largely disregarded as nonspecific byproducts when they were found to be expressed at low levels. In contrast to this prevailing view on the abundance of circular RNA isoforms, we found strong evidence that circular isof
not defined in this paper's own words; the number of reads per sample
froeslev2017-amplicon-post-clustering-curation
In contrast to ecological studies, where increased sampling effort leads to more reliable diversity estimates, the proportion of erroneous singletons in HTS studies is expected to approach 100% asymptotically with increased sequencing depth, even with low (1%) error rates 25 .
not defined in this paper's own words; nucleotide input for blastx-like search
cantalapiedra2021-eggnog-mapper-v2-functional-annotation
When input data are nucleotide sequences, a direct translation is done assuming they represent coding sequences starting in an open reading frame. Alternatively, both Diamond and MMseqs2 can be executed in blastx-like mode, particularly useful when using sequencing reads as input data. For the annotation of long, error-prone sequencing reads, the frameshift option of Diamond can also be enabled. T
not defined in this paper's own words; sequence fragments classified by metagenomic pipelines
wood2019-improved-metagenomic-analysis-kraken-2
Assigning taxonomic labels to sequencing reads is an important part of many computational genomics pipelines for metagenomics projects. Recent years have seen several approaches to accomplish this task in a time-efficient manner [ 1 – 3 ]. One such tool, Kraken [ 4 ], uses a memory-intensive algorithm that associates short genomic substrings ( k -mers) with the lowest common ancestor (LCA) taxa. K
surface-enhanced Raman scattering
zhu2016-quantum-plasmonics-subnanometre-gaps
switch error rates
delaneau2019-haplotype-estimation
not defined in this paper's own words; ordinal student rating used in performance decisions
fan2019-gender-cultural-bias-student-evaluations
Yet many academic institutions require the reporting of SET results as a routine component of performance enhancement and promotion.
social exchange theory
thomas2021-social-capital-financial-literacy
not defined in this paper's own words; respondent and contacted-person characteristic
mossong2008-social-contacts-mixing-infectious-disease
Diaries recorded basic sociodemographic information about the participant, including employment status, level of completed education, household composition, age, and sex. Participants were assigned a random day of the week to record every person they had contact with between 5 a.m. and 5 a.m. the following morning. Participants were instructed to record contacted individuals only once in the diary
physical and anatomical biological traits that lead to the differentiation between males and females
strazzeri2024-gender-postcolonial-studies
read as a continuum informed by context and probability
yim2025-evolutionary-theory-forensic-anthropology
This allows practitioners to interpret skeletal morphology as a continuum, informed by both context and probability.
not defined in this paper's own words; spike frequency adaptation ratio, TIGHTLY CLUSTERED in this class and widely spread in the random sample
Goyernd-a-novel-class-of-inferior-colliculus-princip
Neurons were classified as sustained if their spike frequency adaptation ratio (SFA) was less than 2 ( Peruzzi et al., 2000 ).
saturated fat
davis2015-mediterranean-diet-definition
a self-conscious and self-condemning emotion
litz2022-moral-injury-syndrome
an emotional consequence of stigma
king2026-anticipated-stigma-in-nursing
not defined in this paper's own words in this sentence
delussu2023-mobility-transfer-entropy-covid
To explore the importance of province features in our classification model, we examined the SHAP (SHapley Additive exPlanations) values associated with each, as shown in Fig. 6 .
not defined in this paper's own words; model-agnostic explanation framework
jiang2021-graph-neural-networks-molecular-representation
Here, a recently-developed model-agnostic interpretation framework called SHapley Additive exPlanations (SHAP) was employed to interpret the ML models due to its both local and global interpretability [ 66 ]. SHAP method was inspired from the game theory and the corresponding SHAP value was employed to quantify the contributions of single players to a collaborative game [ 65 ]. Some published stud
a diagnosis shaped by contemporary concerns, knowledge and practices, as Loughran argues
linden2014-shell-shock-revisited
Culturally determined differences in war syndromes thus support Loughran’s model of shell shock as a diagnosis shaped by a specific set of contemporary concerns, knowledge and practices.
a soldiers' term that entered medical terminology and was restricted in official use from 1917
linden2014-shell-shock-revisited
The term found its way into medical terminology from the everyday language of soldiers in the trenches. Prominently featured in a Lancet paper by the Cambridge medical psychologist Charles Samuel Myers (1873–1946) in February 1915, 7 the diagnosis became popular in the first half of the war but – following a recommendation by Myers – was subject to restricted use in official terminology in 1917.
not defined in this paper's own words; a label from soldiers' trench speech for breakdown after nearby explosions without visible injury
linden2014-shell-shock-revisited
Although these soldiers did not show any obvious physical injuries, the proximity to explosions was seen as the decisive causative factor and from the winter of 1914/15 onwards they were increasingly labelled as ‘shell shock’.
Short-term memory is the ability to keep a small amount of information available for a short period of time.
Camina2017-the-neuroanatomical-neurophysiological-and-p
not defined in this paper's own words; the second
Camina2017-the-neuroanatomical-neurophysiological-and-p
The three major classifications of memory that the scientific community deals with today are as follows: sensory memory, short-term memory, and long-term memory. Information from the world around us begins to be stored by sensory memory, making it possible for this information to be accessible in the future. Short-term memory refers to the information processed by the individual in a short period
used loosely as a synonym for working memory, which the paper identifies as part of how the two constructs got conflated
Nees2016-have-we-forgotten-auditory-sensory-memory-re
Auditory sensory memory is qualitatively different from post-sensory memory processes ( Massaro, 1972 ; Crowder, 1982 ), including Atkinson and Shiffrin’s short-term store, which evolved into the working memory (WM) construct (see, e.g., Logie and Cowan, 2015 ).
not defined in this paper's own words; movement of group means toward a global mean
harrison2018-mixed-effects-modelling-ecology
Random effect models use data from all the groups to estimate the mean and variance of the global distribution of group means. Assuming all group means are drawn from a common distribution causes the estimates of their means to drift towards the global mean μ group . This phenomenon, known as shrinkage ( Gelman & Hill, 2007 ; Kéry, 2010 ), can also lead to smaller and more precise standard errors
not defined in this paper's own words; pulling a noisy per-unit estimate toward a value fitted across all units, buying stability at the cost of a little bias
love2014-deseq2
We then shrink the gene-wise dispersion estimates toward the values predicted by the curve to obtain final dispersion values (blue arrow heads). We use an empirical Bayes approach ( Materials and methods ), which lets the strength of shrinkage depend (i) on an estimate
here it is THE FRACTION OF READS FALLING INSIDE CALLED PEAKS, at a fixed read depth. `Only CUT&Tag reaches a fraction of 0.6 within peaks` is therefore a statement about the method AND about whatever called the peaks
kayaokur2019-cut-tag-for-efficient-epigenomic-p
We found that both CUT&RUN and CUT&Tag populate peaks more deeply than ChIP-seq or ATAC-seq, demonstrating that they have exceptionally low signal-to-noise (Fig. 3b ). In addition, CUT&Tag more rapidly populates peaks at low sequencing depths, where ~2 million reads are equivalent to 8 million for CUT&RUN (or 20 million for ChIP-seq), demonstrating the exceptionally high efficiency of CUT&Tag. Of
not defined in this paper's own words; operationally, the fraction of reads falling inside peaks called by MACS2 at a fixed read depth
kayaokur2019-cut-tag-for-efficient-epigenomic-p
Similar footprints were obtained using different salt concentration washes, although 300–500 mM salt concentrations resulted in somewhat reduced signal-to-noise
a seven-category subset representable as one file with one row per record and one column per term
wieczorek2012-darwin-core-evolving-community-biodiversity-data-standard
Darwin Core Categories: Simple Darwin Core is comprised of seven categories of terms (green). This subset of Darwin Core terms represents descriptive data about organisms that can be represented in one file with one row per record and one column per term. Two additional categories (orange) expand Darwin Core with concepts that require a more complex data structure, such as multiple measurements fr
flat-record sense: nonrepeating properties in text or XML
wieczorek2012-darwin-core-evolving-community-biodiversity-data-standard
The Simple Darwin Core ( http://rs.tdwg.org/dwc/terms/simple/index.htm ) document explains the capacity to share records with properties that do not repeat, as simple text files or XML. There is also an XML Guide with reference XML schemas for highly structured data and a Text Guide explaining the construction of Darwin Core Archives (a combination of CSV files and a simple XML document describing
not defined in this paper's own words; offline rerunning of embodied or abstract processes
jefferies2024-multidisciplinary-semantic-glossary
Dissent #1 for simulation (Bedny): There are two different notions of simulation used in the literature. The current definition focuses on the use of the term simulation form the embodiment perspective. However, simulations can also occur within abstract cognitive models. For example, intuitive theories of physics have been modeled as “physics engines” (Battaglia et al., 2013 ). Such models run si
not defined in this paper's own words; model checking through replicated ideal datasets
harrison2018-mixed-effects-modelling-ecology
Simulation is a powerful tool for assessing model fit ( Gelman & Hill, 2007 ; Kéry, 2010 ; Zuur & Ieno, 2016 ), but is rarely used. The premise here is simple: when simulating a response variable from a given set of parameter estimates (a model), the fit of the model to those simulated ‘ideal’ response data should be comparable to the model’s fit to the real response variable ( Kéry, 2010 ). Each
running a perceptual, motor, or interoceptive process outside the context that normally elicits it
jefferies2024-multidisciplinary-semantic-glossary
Definition : Simulation is the prerunning or rerunning of a process outside of the proximate context that normally compels or cues that process to run. Simulation can include input (perceptual), output (motor), and interoceptive (affective and cognitive) processes and can be explicit and intentional or implicit and automatic. An example of explicit and intentional simulation is motor imagery or pe
a strategy used to explore two or more concepts to achieve a greater comprehension of each concept and their interrelationship
wang2025-social-frailty-isolation-dementia
not defined in this paper's own words; an analysis that examines several related concepts together in order to separate them
martins2024-spiritual-distress-hopelessness
A simultaneous concept analysis (SCA) of these concepts is needed to clarify the terminology used in palliative care.
not defined in this paper's own words; a new expression source for the co-expression channel
szklarczyk2022-string-database
The degree of co-expression between RNAs (or between proteins) across different conditions provides an essential insight into the functional protein–protein interaction network of a cell ( 61–64 ). STRING collects gene expression evidence from RNA expression arrays and RNA-Seq datasets processed by the GEO database ( 65 ) as well as co-regulation evidence from the ProteomeHD database ( 7 ). In ver
not defined in this paper's own words; sequencing the transcriptomes of individual cells
jew2020-bulk-expression-cell-composition-estimation
Bisque implements a regression-based approach that utilizes single-cell RNA-seq (scRNA-seq) or single-nucleus RNA-seq (snRNA-seq) data to generate a reference expression profile and learn gene-specific bulk expression transformations to robustly decompose RNA-seq data.
not defined in this paper's own words; technical proficiency; argued not to be the requirement for being an artist
can-computers-create-art
Skill is clearly not the real requirement for someone or something to be an artist. Any human can make art, including unskilled amateurs and children. Conversely, computers can already be programmed to create infinite sequences of dazzling realistic or abstract imagery, exhibiting technical proficiency way beyond the typical human capacity.
not defined in this paper's own words; what he acquired, and what the field then set aside
Camina2017-the-neuroanatomical-neurophysiological-and-p
A skill is thought to be acquired when behavior changes as a result of experience or practice.
a superordinate category recommended FOR POLICYMAKERS AND SERVICE PLANNERS ONLY, and disclaimed for researchers, for parents and for treatment planning in the same paragraph
bishop2017-phase-2-of-catalise-a-multinationa
It is not anticipated that this terminology will be useful for those doing research on the nature or causes of language disorders, nor will it be helpful in explaining a child's difficulties to parents or in determining a treatment pathway. It could, however, serve a purpose for those who need to plan services, who may need to estimate how many children are likely to require additional support and
not defined in this paper's own words; speech, language and communication needs - the superordinate service-planning category DLD sits inside
bishop2017-phase-2-of-catalise-a-multinationa
Figure 2 Venn diagram illustrating relationship between different diagnostic terms. DLD is nested within the broader SLCN category
how well a person has slept, and how tired they feel upon waking
smith2022-parental-sleep-sick-child
not defined in this paper's own words; how well older adults sleep, read here through sleep problems and the distress they cause
huang2024-socially-supported-sleep-older-adults
Social support can improve sleep quality through enabling a feeling of belonging and connection and protect older adults from negative emotions and social isolation
not defined in this paper's own words; linear degree of phenotypic plasticity
chevin2010-adaptation-plasticity-extinction-changing-environment
phenotypic plasticity: direct influence of the environment on individual phenotypes through developmental mechanisms. For a linear norm of reaction plasticity is measured by the slope b
not defined in this paper's own words; linear environmental sensitivity of selection
chevin2010-adaptation-plasticity-extinction-changing-environment
environmental sensitivity of selection: change in the optimum phenotype with the environment. For a linear relationship, it is measured by the slope B
Cumulative emissions of ∼1000 GtC, sometimes associated with 2°C global warming, would spur “slow” feedbacks and eventual warming
hansen2013-climate-change
not defined in this paper's own words; ice sheets and vegetation, quantified from paleoclimate, which amplify the standard sensitivity
hansen2013-climate-change
Paleoclimate data indicate that slow feedbacks would substantially amplify the 2°C global warming.
social media
aichner2021-social-media-definitions
soil moisture
liu2020-soil-moisture-dryness-stress-ecosystem
not defined in this paper's own words; addiction-like symptoms such as craving, withdrawal and tolerance from smartphone use
kwon2013-smartphone-addiction-scale
This result showed that the propensity of smartphone addiction and internet addiction was not completely identical, but rather they had moderate correlation [15]
problematic checking driven by social expectations and intermittent anticipated rewards
veissiere2018-hypernatural-monitoring-smartphone-addiction
In this paper, we offer the provocative claim that current moral panics over smartphone addiction overlook a factor of fundamental importance: there is nothing inherently addictive about mobile technology. We suggest, rather, that it is the social expectations and rewards of connecting with other people and seeking to learn from others that induce and sustain addictive relationships with smartphon
not defined in this paper's own words; saved project states retained by version control
wilson2014-best-practices-scientific-computing
The standard solution in both industry and open source is to use a version control system (3b) (VCS) [27] , [47] . A VCS stores snapshots of a project's files in a repository (or a set of repositories). Programmers can modify their working copy of the project at will, then commit changes to the repository when they are satisfied with the results to share them with colleagues.
not defined in this paper's own words; states stored by a version control system
wilson2017-good-enough-practices-scientific-computing
A version control system stores snapshots of a project's files in a repository. Users modify their working copy of the project, then save changes to the repository when they wish to make a permanent record and/or share their work with colleagues. The version control system automatically records when the change was made and by whom, along with the changes themselves.
deference to approved norms and use of socially supplied information
constant2019-regimes-expectations-social-conformity
In the introduction, we saw that social psychologists have defined the construct of social conformity as deference to the socially approved norms as one possible response to social influence; whereas cultural evolutionists have cast it as an adaptive learning strategy that allows individuals to zero in on locally adaptive behavior. These two perspectives on social conformity may be viewed as empha
not defined in this paper's own words; norm-sensitive and information-seeking alignment
constant2019-regimes-expectations-social-conformity
The results of Deutsch and Gerard suggest that conformity is driven both by a utility maximizing component with respect to other people’s approval (the normative component), and a component based on the disposition to zero in on the correct solution by seeking information (the informational component). The informational component amounts to disambiguating one’s alternative interpretations by lever
not defined in this paper's own words; social setting contributing to effect heterogeneity
vlaev2019-financial-incentives-health-behavior
After reviewing the mounting evidence on the uncertain effect of financial incentives to improve health behaviors, Thirumurthy, Asch and Volpp [ 74 ] conclude that the principle that individuals respond to incentives has considerable empirical support, but the devil is in the detail, because the magnitude of effects differs substantially based on the nature of the behavior, the size of the incenti
not defined in this paper's own words; the private (unobserved) versus public (observed) setting in which a choice is made
social-reputation-influences-on-liking
In turn, art appraisals have been shown to be changeable by manipulating social context. Informing individuals that paintings are from a prestigious museum (compared to computer-generated images) increased relative liking ratings [ 45 ]. Similar impacts, on liking and valuation, has been found by informing individuals that art is by a prestigious artist versus one of their students, is an original
community-based activities and interpersonal interactions based on resource sharing
huang2024-socially-supported-sleep-older-adults
not defined in this paper's own words; how far a person is involved with others and with community affairs
zhang2023-empowerment-older-adults-chinese
Similarly, Active participation in social and cultural activities contributes to the establishment of social support networks and enhances social engagement ( Achmad, 2022 ).
social vulnerability in terms of social resources, social behaviors, and social activities
huang2024-socially-supported-sleep-older-adults
usually portrayed as someone who lives alone, is unable to provide help to others, goes out less frequently, visits friends infrequently and does not talk to anyone on a daily basis
wang2025-social-frailty-isolation-dementia
Social health is defined here as adequate quantity and quality of relationships in a particular context to meet an individual’s need for meaningful human connection
doyle2024-social-health-conceptualization
includes the capacity to fulfil potential and obligations, the ability to manage life with some degree of independence and participation in social activities
wang2025-social-frailty-isolation-dementia
wellbeing that relies on capacities both of the individual and the social environment
vernooij-dassen2022-social-health-framework
not defined in this paper's own words; fairness in human rights, poverty, safety and access to health
kim2023-social-responsibility-nursing-organizations
Defining the social responsibility of a nursing organization apart from the social justice concept is difficult.
the fair and equitable benefit of the people of a community from health care based on need
zeydani2023-community-based-nursing
Social loneliness originates from the absence of a broader group of contacts or an engaging social network.
vantilburg2021-social-emotional-existential-loneliness
the perception of dissatisfaction with the quality of relationships
mansfield2021-loneliness-conceptual-review
not defined in this paper's own words; frequency of encountering COVID-19 news and information on named social platforms
gao2020-mental-health-problems-and-social
Abstract. Huge citizens expose to social media during a novel coronavirus disease (COVID-19) outbroke in Wuhan, China. We assess the prevalence of mental health problems and examine their association with social media exposure. A cross-sectional study among Chinese citizens aged≥18 years old was conducted during Jan 31 to Feb 2, 2020. Online survey was used to do rapid assessment. Total of 4872 pa
not defined in this paper's own words; how much a person encounters content about the stigmatised behaviour on social media
king2026-anticipated-stigma-in-nursing
Social media exposure may further amplify anticipated stigma, whereas purposeful self‐disclosure and advocacy efforts can reduce it (Liu et al. 2020 ).
a self-reported FREQUENCY, and the exposure variable in a cross-sectional design. `Frequently exposed` people are more anxious; whether the exposure or the anxiety came first is what the paper says it cannot tell
gao2020-mental-health-problems-and-social
First, this is a cross-sectional study, so it is difficult to accurately elucidate causal relationships between SME and mental health. Additional longitudinal studies, such as cohort studies or nested case-control studies, are essential in the future.
not defined in this paper's own words; recursive social remembering and forgetting
esposito2023-collective-memory-consciousness-social-systems
How does the memory of society and social subsystems function? Social memory is not collective memory (as defined by Halbwachs), where individuals remember roughly the same facts when they are exposed to the same social conditions: “social memory is by no means constituted by the traces left by the communication in the individual systems of consciousness. It is, on the contrary, a proper performan
selective recursive remembering and forgetting by communication systems
esposito2023-collective-memory-consciousness-social-systems
In Luhmann’s sociology, the concept of social memory refers very precisely to a specific operation of social systems: the constant distinction that is made between forgetting and remembering within communication processes ( Luhmann, 2012 , p. 137). Forgetting is essential, as it frees up the system’s information processing capacities and opens it up to new operations, preventing the system from be
SP involves healthcare providers referring individuals with non-clinical needs to community resources and social services to address challenges such as social isolation, financial hardship, and insufficient support
zhang2026-digital-social-prescribing-concept
aims to link primary healthcare services to community and voluntary sector organisations
doyle2024-social-health-conceptualization
the ability of human communities to withstand external shocks to their social infrastructure, such as environmental variability or social, economic, and political upheaval
kais2016-community-capitals-resilience
the capacity of a system, society, or group to resist and absorb the hazards, preserving its essential basic structures and transforming itself in a manner that better ensures it survival in the future
moya2022-social-resilience-definition
not defined in this paper's own words; the identity broadcast through public actions and choices, contrasted with the private self
social-reputation-influences-on-liking
Furthermore, for art and aesthetic research as well as social psychological studies, using prestigious objects as stimuli, investigations should focus more on social mechanisms and how they lead to behavioral change. Hence, we would like to emphasize that interactions between the private self and self-image, and within a particular social context (social self), are influenced by social reputation,
the manifestation of one's identity broadcast through actions and choices, which may diverge from one's private choices and values
social-reputation-influences-on-liking
One explanation for our liking and willingness-to-pay choices—and especially their combination—is the differential relation to social reputation [ 25 , 26 ], which may directly intervene at the intersection of artistic and monetary values and personal choice. Social reputation can be defined, in general, as the respect, esteem, or prestige that a person (or object) has in the eyes of others (i.e.,
a composite indicator of lag-distributed income per capita, average years of schooling and the fertility rate in females under 25
vos2020-global-burden-369-diseases
The Socio-demographic Index (SDI) is a composite indicator of a country's lag-distributed income per capita, average years of schooling, and the fertility rate in females under the age of 25 years ( appendix 1 section 6 ). 13 For changes over time, we present annualised rates of change as the difference in the natural log of the values at the start and end of the time interval divided by the numbe
not defined in this paper's own words; the development index used to stratify results
ferrari2024-global-burden-371-diseases
In this section, we provide an overview of the burden estimation process for GBD 2021, with further details provided in appendix 1. Methods used to generate burden estimates closely followed those for GBD 2019; however, here we summarise new or updated processes since GBD 2019. Detailed descriptions of analytical methods and models for each cause of disease burden are also available in a searchabl
not defined in this paper's own words; social-resource position operationalized through several proxies
bucher2020-nudges-real-life-food-purchasing
Six studies evaluated the effects of nudges across levels of SEP, for which several indicators were used including educational level, food security, job type, and income. In subgroup analyses, there were modest indications that nudges – including signage, mixed nudging interventions, and position nudges – were significantly more effective among people with a lower educational level [ 44 ], in peop
operationalised by the respondent’s highest attained educational level
kamphuis2015-bourdieu-cultural-capital-food-choices
not defined in this paper's own words; computational apparatus used to generate and analyze scientific results
wilson2014-best-practices-scientific-computing
We believe that software is just another kind of experimental apparatus [3] and should be built, checked, and used as carefully as any physical apparatus. However, while most scientists are careful to validate their laboratory and field equipment, most do not know how reliable their software is [4] , [5] . This can lead to serious errors impacting the central conclusions of published research [6]
not defined in this paper's own words; writing, organizing, testing, and sharing analysis code
wilson2017-good-enough-practices-scientific-computing
We organize our recommendations into the following topics ( Box 1 ): Data management: saving both raw and intermediate forms, documenting all steps, creating tidy data amenable to analysis. Software: writing, organizing, and sharing scripts and programs used in an analysis. Collaboration: making it easy for existing and new collaborators to understand and contribute to a project. Project organizat
not defined in this paper's own words; stored water state in the WBM
abatzoglou2018-terraclimate-high-resolution-global-dataset
A one-dimensional modified Thornthwaite-Mather climatic water-balance model (WBM) 22 , 31 was used to calculate monthly water balance from 1958–2015. The WBM is a single bucket model applied consistently across global land surfaces that operates on a monthly time step and considers the interplay between precipitation, ET 0 , as well as soil and snowpack water storage. The WBM accounting scheme con
not defined in this paper's own words; water content of the soil
jing2015-ecosystem-multifunctionality-biodiversity-climate
In contrast to soil moisture, MAT generally had no effect on among-site variation in ecosystem functions when we considered it in isolation of other potential factors ( Supplementary Fig. 9a ).
the direct water pool of plants
liu2020-soil-moisture-dryness-stress-ecosystem
not defined in this paper's own words; somatostatin-expressing inhibitory interneurons; also the name of the peptide they express, so the same three letters are a label and a substance
Yavorska2016-somatostatin-expressing-inhibitory-interneur
Based on histochemical markers, we can divide cortical inhibitory cells into three non-overlapping categories in mice: those that express parvalbumin (PV), somatostatin (SOM), or vasointestinal peptide (VIP).
not defined in this paper's own words; somatostatin-expressing interneurons, the only class whose activity goes DOWN, cast as the MODULATORS
Kumar2023-cell-type-specific-plasticity-of-inhibitory
Reduced SOM sound-evoked activity (non-recovery) after NIHL We next investigated SOM plasticity after NIHL.
People’s subjective perception of sound
liu2022-definition-of-noise
not defined in this paper's own words here; it “comprises three components” - biophony, geophony and anthropophony
mooney2020-marine-acoustic-biodiversity-assessment
The resulting ‘soundscape’ [ 25 , 26 ] comprises three components [ 27 ]: biological sounds (biophony), geophysical sounds (geophony; natural abiotic sources such as wind, waves, rain, water flow, ice cracking) and anthropogenic sounds (anthropophony; human-generated, non-biological sound).
not defined in this paper's own words; population from which database members derive
benchimol2015-record-routinely-collected-health-data
No additional RECORD items are needed to expand the STROBE requirement to “describe the setting, locations, and relevant dates, including periods of recruitment, exposure, follow-up, and data collection.” Authors should note that beyond the type of database already alluded to in the title and/or abstract, information should be provided to allow the reader to understand the content and validity of
the population from which the database population is derived and about which inference is intended
benchimol2015-record-routinely-collected-health-data
There are three levels of population hierarchy that are relevant in studies using routinely collected data and will be referred to throughout the statement. These populations include the source population, which represents that from which the database population is derived and hence about which the researchers want to make inferences; the database population, which is derived from the source popul
as coordinates and toponyms: what a GIS records, and explicitly not what mapping antiquity amounts to
periegesis2023-mapping-antiquity
Mapping pre-modern space is rarely a matter of documenting toponyms or establishing precise coordinates.
what an individual perceives and interacts with objectively through the connection that he or she forms with the area
liu2022-definition-of-noise
not defined in this paper's own words; the current regime used to extract hole mobility from hole-only diodes
liu2014-polymer-solar-cells-aggregation
The reason why PTB7 does not perform well in thick-film PSCs is partially owing to the relatively low hole transport ability (space charge limited current (SCLC) mobility ~6 × 10 −4 cm 2 V −1 s −1 ; ref. 17 ) related to the low crystallinity of the PTB7 polymer.
not defined in this paper's own words; the method used to measure hole and electron mobility
sun2018-low-cost-polymer-donor-solar-cells
were measured using space charge limited current (SCLC) method with hole-only (ITO/PEDOT: PSS /PTQ10: IDIC/Au) and electron-only (ITO/ZnO/PTQ10: IDIC/PDINO/Al) devices
Because these neurons fire to relatively very few stimuli, each stimulus is likely to be encoded by a relatively small neuronal assembly (Quian Quiroga et al. 2008a ). In this ‘sparse coding’ view, the members of the assembly respond in an explicit manner to the specific concept they encode and typically remain silent for other objects.
Rey2015-single-cell-recordings-in-the-human-medial-t
as few active units as possible represent a stimulus (population, not lifetime, sparsity)
zhu2013-sparse-coding-dynamical-system
The (population) sparse coding hypothesis conjectures an optimal sensory coding approach where a neural population uses as few active units as possible to represent a stimulus.
not defined in this paper's own words in this sentence; introduced into the network by spikes
henkes2024-spiking-neural-networks-regression
The spikes introduce sparsity in the network, which can be effectively exploited by neuromorphic hardware to improve latency, power and memory efficiency.
not defined in this paper's own words; a large share of zero values
wang2021-scgnn-graph-neural-network-single-cell
The sparsity brought by the L1 term benefits the expression imputation in dropout effects.
not defined in this paper's own words; the broad term as used in the previous literature, often for measures that are narrower
Berkowitz2018-which-cognitive-abilities-make-the-differenc
Large-scale studies in U.S. populations revealed that high spatial ability (SA) predicted choice and long-term achievements in STEM beyond verbal and quantitative abilities, both among highly selective groups and in more heterogeneous samples [ 4 , 5 , 6 ].
not defined in this paper's own words; domain-general psychometric capacity
desutter2017-embodied-spatial-thinking-stem
Researchers have historically focused on the relatively narrow cognitive construct of spatial ability to quantify human propensity to reason about space. Studies of spatial ability grew out of a long history of psychometric development in early psychology and this line of work assumed that humans have some genetically determined baseline capacity to perceive, mentally visualize, and manipulate spa
Very broadly, spatial ability (SA) refers to “the ability to generate, retain, and manipulate abstract visual images” [ 19 ].
Berkowitz2018-which-cognitive-abilities-make-the-differenc
The most studied type of SA in the context of STEM is spatial visualization (SV), which is the ability to “…apprehend a spatial form, shape or scene in order to match it with another spatial form, shape or scene, often with the necessity of rotating it in two or three dimensions one or more times”
Berkowitz2018-which-cognitive-abilities-make-the-differenc
not defined in this paper's own words; the specific factor this study measures - complex mental manipulation of objects in three dimensions
Berkowitz2018-which-cognitive-abilities-make-the-differenc
Since our focus was on the interplay between specific abilities in achievement prediction (i.e., their unique predictive validity), we first specified a correlated factors model with three latent variables: verbal reasoning, numerical reasoning and spatial visualization (SV).
The most studied type of SA in the context of STEM is spatial visualization (SV), which is the ability to “…apprehend a spatial form, shape or scene in order to match it with another spatial form, shape or scene, often with the necessity of rotating it in two or three dimensions one or more times” [ 24 ].
Berkowitz2018-which-cognitive-abilities-make-the-differenc
the specific factor measured here, and the authors' stated convention is to say SV for their own work and SA when reporting prior research
Berkowitz2018-which-cognitive-abilities-make-the-differenc
Since previous studies have often used the broad term SA even when measures were of SV, we use the term SA when referring to previous research in this field.
Statistical parity difference
koshiyama2024-algorithm-auditing-ai-risks
shortest path distances
song2015-megena-gene-coexpression-network
not defined in this paper's own words; models linking records to environmental data to extrapolate distributions
meyer2015-global-priorities-biodiversity-distributions
Most species distribution models (SDMs) connecting records with fine-grained environmental data for extrapolation 17 are unable to provide a general remedy here, owing to their known sensitivity to environmental bias 14 36 .
not defined in this paper's own words; models relating species occurrence to environment
schleuning2016-ecological-networks-plant-extinction-climate
Here we combine species distribution models with ecological network analyses to test potential impacts of climate change on >700 plant and animal species in pollination and seed-dispersal networks from central Europe.
not defined in this paper's own words; statistical models of a species' range as a function of climate
thuiller2019-uncertainty-global-biodiversity-scenarios
By this, we explore the uncertainties originating from selecting species distribution models (SDMs), dispersal strategies, global circulation models (GCMs), and representative concentration pathways (RCPs).
Alternatively, the spike trains themselves may be used for estimating the effective connectivity between two neurons, defined here as spike transmission.
Spivak2022-deconvolution-improves-the-detection-and-qua
not defined in this paper's own words; whether a presynaptic spike produces a postsynaptic one - the thing all of these measures are estimates of
Spivak2022-deconvolution-improves-the-detection-and-qua
To quantify effective connectivity, we defined “real spike transmission gain” (rSTG) as the number of extra postsynaptic spikes generated following every presynaptic spike.
discrete pulses ( ϕ spk = 1 ) if the membrane threshold is reached by the time-evolving membrane potential
henkes2024-spiking-neural-networks-regression
These pulses are called spikes , see Figure 3 .
not defined in this paper's own words; action potentials of the presynaptic neurons
mazzoni2015-local-field-potential-integrate-and-fire
In laminar population analysis (LPA, [ 30 ]) the LFP time course was rather assumed to be given by the measured firing rates convolved with a suitable (i.e., delayed exponential) kernel, the rationale being that spikes causally drive synaptic currents which in turn set up the LFP.
enables nurses to understand, accept and respect their own spiritual beliefs, the spiritual beliefs of others and the differences among them
alshakhshir2024-spiritual-competence-nursing
results from an individual’s innate capacity (internal potential) and the opportunities provided by their surrounding context
monteiro2025-spiritual-awakening-concept
an ethical stance that focuses on an individual’s suffering and capability to find a sense of purpose
monteiro2025-spiritual-awakening-concept
an ethical standard of professional practice that involves communicating with patients and their families, as well as developing activities and methods aimed at enhancing spiritual well-being, spiritual health, and overall quality of spiritual life
coelho2025-spiritual-care-competence-palliative
an interactive and intentional process that includes, beyond the intimate and affectional connection with self, others, or God, the nursing intervention that is holistic and patient‐centered
tavares2022-spiritual-comfort-support-care
not defined in this paper's own words; a state whose absence some antecedents of unpreparedness can bring about
costeira2024-death-unpreparedness-covid
Other events that precede death preparedness and can induce an absence of spiritual well-being [ 35 ] include bereavement by a friend’s death [ 43 ], negative death attitudes from previous experiences [ 35 , 42 , 46 , 55 , 60 ], and death confrontation
not defined in this paper's own words; the sense of meaning, peace and support that grows from spiritual connection
de-brito-sena2021-spirituality-healthcare-definition
The third axis (lower gray section) refers to the development of values, personal growth, and sensations of meaning, purpose in life, well-being, support, and inner peace through connection with something that can affect the behavior of the individual
not defined in this paper's own words; the nurse's own spiritual health, felt as emotional peace or low work stress
alshakhshir2024-spiritual-competence-nursing
Because spiritual well‐being in nurses can take the form of emotional peace or low work‐related stress, spiritual well‐being improves their ability to address patients' spiritual needs
linear combinations of B-spline basis elements
virtanen2020-scipy-fundamental-algorithms-scientific-computing
not defined in this paper's own words; models for antibody-titre trajectories
ainsworth2020-performance-characteristics-of-fiv
Whereas sample numbers were partly decided by the availability of samples required to address the study aims, the sample size was prospectively calculated to provide 80% power to detect a lower 95% CI of at least 96·0% if the actual assay sensitivity was 98·3% (which required ≥460 positive samples) and 80% power to detect a lower 95% CI of at least 96·0% if the actual assay specificity was 97·7% (
not defined in this paper's own words; suspended particulate matter
isobe2019-microplastics-upper-ocean
Half of the total SPM (most with diameters < 10 μm) in the North Pacific is non-organic 47 and, therefore, pelagic microplastics are likely to become the predominant non-organic SPM before the 2060s.
Here, with the help of remote sensing images, this work quantitatively demonstrated the improvement in surface water quality in terms of suspended particulate matter (SPM) in the Vembanad Lake, the longest freshwater lake in India.
yunus2020-covid-19-and-surface-water-quality-improved
Severe and persistent mental illness
zumstein2020-severe-persistent-mental-illness
kept as a heuristic device rather than rebutted
zumstein2020-severe-persistent-mental-illness
Instead of rebutting the concept of SPMI as a whole due to the alleged problem of lack of consensus definition, we propose to keep it as a heuristic device.
not defined in this paper's own words; REST associations removed by blacklist filtering
amemiya2019-the-encode-blacklist-identificatio
Finally, to demonstrate the artificial correlation created by these peak regions, we performed a correlation analysis of the ENCODE peak regions in the human genome using a blacklist-filtered set as well as an unfiltered set of peaks (Fig. 2c ). In the unfiltered set of peaks, blacklist regions sequester a large portion of ChIP-seq reads, leading to an illusion of high correlation of these regions
not defined in this paper's own words; associations induced by shared cultural ancestry
jackson2021-text-thought-language-psychological-science
From a statistical standpoint, this is a case of “Galton’s problem”—interdependence between countries can lead to spurious correlations.
Consistent with previous studies, we find that for stable learning of PA and SA, an additional stabilization mechanism is necessary. We show that a generalized version of the standard multiplicative homeostatic plasticity (Renart et al., 2003 ; Toyoizumi et al., 2014 ) stabilizes learning by effectively masking excitatory connections during stimulation and unmasking those connections during retrieval.
Pereira2020-unsupervised-learning-of-persistent-and-sequ
not defined in this paper's own words; what has to be added for either to be learned
Pereira2020-unsupervised-learning-of-persistent-and-sequ
However, previous studies have shown that PA could be learned without additional stabilization mechanisms.
a position along a subtype's reconstructed sequence of biomarker abnormality
young2018-sustain-neurodegenerative-heterogeneity
Key contributors to this heterogeneity are that individuals belong to a range of disease subtypes (giving rise to phenotypic heterogeneity) and are at different stages of a dynamic disease process (producing temporal heterogeneity).
refers to the physical and cultural environment in which gender/sex is performed and is set up to enable and reinforce the performance of binary gender
morgenroth2021-gender-trouble-binary
Stakeholders include those individuals who are targeted by the intervention or policy, those involved in its development or delivery, or those whose personal or professional interests are affected
skivington2021-complex-interventions-framework
Meaningful engagement with appropriate stakeholders at each phase of the research is needed to maximise the potential of developing or identifying an intervention that is likely to have positive impacts on health and to enhance prospects of achieving changes in policy or practice.
not defined in this paper's own words; the social players of the organ donation and transplantation system, from donors and families to legislators and society
martinez-lopez2023-trust-organ-donation
In turn, these stakeholders are part of a wider system, the health system, that covers all aspects of health care in a country or region.
not defined in this paper's own words; spread of chronological age affecting correlation
horvath2013-dna-methylation-age-human-tissues
The second approach, referred to as leave-one-data-set-out cross-validation (LOOCV) analysis, leads to unbiased estimates of the predictive accuracy for each data set. As suggested by its name, this approach estimates the DNAm age for each data set (considered as test data set) separately by fitting a separate multi-tissue age predictor to the remaining (left out) data sets. The resulting unbiased
not defined in this paper's own words; the statistic the paper uses as its metric of precipitation variability
pendergrass2017-precipitation-variability-warmer-climate
We quantify precipitation variability by its standard deviation. We remove the linear trend from each time series before calculating its standard deviation.
not defined in this paper's own words; cross-source dispersion statistic used to assign reliability groups
sorkun2019-aqsoldb-aqueous-solubility-descriptors
If the standard deviation (SD) of the set of values was >=0.5 LogS units, we assigned the compounds to group G4 (183), else to G5 (636).
not defined in this paper's own words; rule-based structure standardization component
bento2020-open-source-chemical-structure-curation
A chemical curation pipeline has been developed using the open source toolkit RDKit. It comprises three components: a Checker to test the validity of chemical structures and flag any serious errors; a Standardizer which formats compounds according to defined rules and conventions and a GetParent component that removes any salts and solvents from the compound to create its parent. This pipeline has
the component applying predefined chemical-structure rules and conventions
bento2020-open-source-chemical-structure-curation
Standardizer : processes (standardises) chemical structures according to a set of predefined rules
not defined in this paper's own words; AnnData's earlier HDF5 backing state
wolf2018-scanpy-large-scale-single-cell-gen
In this context, we acknowledge the discussions with S. Linnarson, which motivated us to extend ANNDATA ’s previously static to a dynamic HDF5 backing
not defined in this paper's own words; pressure layers held constant through time
venter2016-global-terrestrial-human-footprint-maps
Moreover, our work is subject to three primary limitations. First, like all attempts to map cumulative pressures we did not fully account for all human pressures. Some of the missing and static pressures, such as invasive species and pollution, may be closely associated with pressures we did consider, and therefore their inclusion may not affect our overall results. Second, a lack of available dat
not defined in this paper's own words; correspondences internalised from environmental co-occurrence statistics / coupling priors
olfactory-colour-crossmodal-correspondences
In closing, it is tempting to ask how the strength/robustness of the crossmodal correspondences that have been documented between odour and colour compare to those established between colour and taste (Spence, 2019a , b ; Spence et al., 2015 ) or between odour and auditory qualities such as pitch and timbre (Deroy et al., 2013 ). As yet, there is simply no standardised means of assessing the relat
the account on which correspondences are internalised from the statistical co-occurrence of stimulus dimensions in the environment, modelled as coupling priors
olfactory-colour-crossmodal-correspondences
Over the years, several distinct classes of explanation have been put forward to try and account for the wide range of crossmodal correspondences that have been documented to date (see Spence, 2011 , 2018a , for reviews). It is worth noting that such explanations are normally only invoked under those conditions in which the various unisensory cues are not tied to a common source object, as for the
not defined in this paper's own words; downstream activity needed for rich genome-wide measurements
carpenter2006-cellprofiler
Future development We hope that computer vision researchers will contribute new algorithms to the project so that their theoretical work can be applied to practical biological problems. For example, while CellProfiler can currently analyze each slice of a time-lapse movie or three-dimensional image set independently, implementation of algorithms specifically designed to take advantage of the extra
not defined in this paper's own words; quantitative analysis whose validity depends on research design
munafo2017-manifesto-reproducible-science
Improving methodological training. Research design and statistical analysis are mutually dependent. Common misperceptions, such as the interpretation of P values 31 , limitations of null-hypothesis significance testing 32 , the meaning and importance of statistical power 2 , the accuracy of reported effect sizes 33 , and the likelihood that a sample size that generated a statistically significant
not defined in this paper's own words; analysis procedures that should be reported, including confounding control and subgroup methods
vonelm2007-strobe
Describe all statistical methods, including those used to control for confounding (b) Describe any methods used to examine subgroups and interactions (c) Explain how missing data were addressed (d) Cohort study—If applicable, explain how loss to follow-up was addressed Case-control study—If applicable, explain how matching of cases and controls was addressed Cross-sectional study—If applicable, de
not defined in this paper's own words; quantitative methods that should be fully described
kilkenny2010-arrive-guidelines-reporting-animal-research
Failure to describe research methods and to report results appropriately therefore has potential scientific, ethical, and economic implications for the entire research process and the reputation of those involved in it. This is particularly true for animal research, one of the most controversial areas of science. The largest and most comprehensive review of published animal research undertaken to
not defined in this paper's own words; an often misplaced emphasis in pilot-study interpretation
thabane2010-a-tutorial-on-pilot-studies-the-what
Quite often the emphasis is wrongly placed on statistical significance, not on feasibility - which is the main focus of the pilot study. Our experience in reviewing submissions to a research ethics board also shows that most of the pilot projects are not well designed: i.e. there are no clear feasibility objectives; no clear analytic plans; and certainly no clear criteria for success of feasibilit
not defined in this paper's own words; a dichotomous description of whether a P value crosses a chosen cutoff
greenland2016-statistical-tests-p-values-confidence-intervals-power
The P value is the probability that the test hypothesis is true; for example, if a test of the null hypothesis gave P = 0.01, the null hypothesis has only a 1 % chance of being true; if instead it gave P = 0.40, the null hypothesis has a 40 % chance of being true . No! The P value assumes the test hypothesis is true—it is not a hypothesis probability and may be far from any reasonable probability
NEURONS WITH A length to width RATIO <3 WERE STELLATE AND THOSE WITH A RATIO >= 3 WERE DISC-SHAPED
Goyernd-a-novel-class-of-inferior-colliculus-princip
Oliver and colleagues distinguished disc-shaped from stellate neurons by calculating the length to width ratio of the dendritic arbor: neurons with a ratio <3 were stellate and those with a ratio >= 3 were disc-shaped ( Oliver et al., 1991 ). Applying this classification to our sample, 93% of VIP neurons in the ICc (39 of 42 neurons) had a length to width ratio <3, therefore being classified as st
not defined in this paper's own words; one side of a length-to-width ratio of 3, taken from a 1991 paper
Goyernd-a-novel-class-of-inferior-colliculus-princip
93% of VIP neurons had a length to width ratio <3, indicating that they are stellate cells.
not defined in this paper's own words; enantiomeric and diastereomeric structures with shared connectivity
hoja2021-qm7x-quantum-mechanical-properties
the QM7-X dataset not only includes constitutional/structural isomers, but also stereoisomers
not defined in this paper's own words; variants that can differ in biological activity
sorokina2021-coconut-open-natural-products
The authors are well aware that different stereoisomers of a compound can have very different biological activity. The procedure described above was a necessary step to create a unified resource out of distributed databases of varying quality. Further curation will gradually improve stereochemical assignments and linkage to original source articles.
THE AREA UNDER THE STC PEAK IN A TEMPORAL REGION OF INTEREST, DIVIDED BY THE NUMBER OF PRESYNAPTIC SPIKES - and FOR AN STC BELOW BASELINE, THE STG IS A NEGATIVE QUANTITY
Spivak2022-deconvolution-improves-the-detection-and-qua
We then defined the estimated STG (eSTG) as the area under the STC peak in a temporal region of interest (ROI; defined here as 0 < τ ≤ 5 ms 32 ; Fig. 1c , gray bins), divided by the number of presynaptic spikes. For an STC below baseline, the STG is a negative quantity.
not defined in this paper's own words; spike transmission gain, the extra postsynaptic spikes per presynaptic spike - and the same quantity the literature calls EFFECTIVENESS, ASYNCHRONOUS GAIN, SYNAPTIC EFFICACY and SPIKE TRANSMISSION PROBABILITY
Spivak2022-deconvolution-improves-the-detection-and-qua
Previous studies have referred to the STG using various other names: “effectiveness” 33 , “asynchronous gain” 34 , “synaptic efficacy” 11 , and “spike transmission probability” 21 , 32 .
scanning tunnelling microscopy
li2015-strain-textured-mos2-artificial-atoms
systemic-transactional model
falconier2019-dyadic-coping-couples
One of the challenges in mouse-based research is adjusting the strain to the specific study question. Strain selection can potentially affect research outcome, since strain characteristics may interact with genetic manipulations ( Sittig et al., 2016 ). Furthermore, strain characteristics could interact with experimental manipulations. For example, mice that suffer from retinal degeneration cannot fully use visual information and exhibit impaired behavior in hippocampal-based navigation tasks that rely on visual cues
Sloin2022-hybrid-offspring-of-c57bl-6j-mice-exhibit-im
not defined in this paper's own words; the design decision that decides the outcome
Sloin2022-hybrid-offspring-of-c57bl-6j-mice-exhibit-im
Phenotyping study design Mice of each strain were divided into two age groups, three and nine months old ( Table 1 ).
a system-level discrepancy that drives homeostatic action toward a desired region of state space
levin2022-technological-approach-mind-everywhere
• Stress—a system-level state which serves as a driver for homeostatic loops (operating over a variable that is progressively reduced as activity gets the system closer to its desired region of action space). The spatio-temporal and complexity scale of events that can possibly stress a system are a good indicator of that system’s cognitive sophistication. Stress can arise via discord between exter
not defined in this paper's own words; physiological strain on farmed organisms
destoumieuxgarzon2018-one-health-concept
Industrialization, which has fostered intensive breeding and farming practices, has also generated stress in organisms, which in turn has created an environment that is conducive to the spread of infectious agents.
a checklist of 22 items (the STROBE Statement) that relate to the title, abstract, introduction, methods, results, and discussion sections
vonelm2007-strobe
not defined in this paper's own words; general observational-study reporting guideline
benchimol2015-record-routinely-collected-health-data
Routinely collected health data, obtained for administrative and clinical purposes without specific a priori research goals, are increasingly used for research. The rapid evolution and availability of these data have revealed issues not addressed by existing reporting guidelines, such as Strengthening the Reporting of Observational Studies in Epidemiology (STROBE). The REporting of studies Conduct
not defined in this paper's own words; fraction of known protein sequences with determined structures
jumper2021-highly-accurate-protein-structure-prediction-alphafold
Proteins are essential to life, and understanding their structure can facilitate a mechanistic understanding of their function. Through an enormous experimental effort 1 – 4 , the structures of around 100,000 unique proteins have been determined 5 , but this represents a small fraction of the billions of known protein sequences 6 , 7 . Structural coverage is bottlenecked by the months to years of
not defined in this paper's own words; fraction of protein-sequence space for which structural information is available
varadi2021-alphafold-protein-structure-database
The AlphaFold Protein Structure Database (AlphaFold DB, https://alphafold.ebi.ac.uk ) is an openly accessible, extensive database of high-accuracy protein-structure predictions. Powered by AlphaFold v2.0 of DeepMind, it has enabled an unprecedented expansion of the structural coverage of the known protein-sequence space. AlphaFold DB provides programmatic access to and interactive visualization of
SEM comprises a confirmatory measurement model, also known as the confirmation factor analysis (CFA), which estimates the relations among latent constructs and their observed indicators, and a structural model, which estimates the relations among constructs (Kline, 2015 ).
freeman2020-covid-19-vaccine-hesitancy-in-the-uk
not defined in this paper's own words; path modelling of direct and indirect effects
ma2017-climate-warming-plant-biomass-stability
Structural equation modelling (SEM) showed that dominant species stability and species asynchrony jointly explained 75% of the variation in community biomass stability
not defined in this paper's own words; exclusion produced through institutions and social conditions
metzl2014-structural-competency-stigma-inequality
As this special issue attests, public health, social science, and critical race studies scholars have, over the last decade, begun to locate stigma, not just in the attitudes of individual persons, but in the actions of institutions, markets, and health care delivery systems ( Bonilla-Silva, 2003 ; Hatzenbuehler & Link, 2014 ). This literature importantly reveals how stigma in clinical encounters
organizational/structural stigma, through related power processes, involves (intentional or un-intentional) policies or organizational rules, restrictions or opportunity barriers towards stigmatized group
fischer2020-stigma-concept-opioid-crisis
not defined in this paper's own words; the paper names it as the theoretical frame medical anthropology uses to situate “affliction within geopolitical and economic processes”, and criticises it
brown2014-anthropology-viral-hemorrhagic-fevers
Although it clarifies the interplay between macro forces and micro events, the concept elides the materiality of pathogenic encounters by limiting transmission processes to questions of economic vulnerability.
institutional stigmatization and marginalization treated through individualized stories
metzl2014-structural-competency-stigma-inequality
Many complex reasons underlie this frustration with addressing social issues. Vast wealth disparities undoubtedly foment feelings of learned helplessness, as gaps between rich and poor or health and illness become mortared into mortal logics of common sense. But perhaps one explanation for the insecurity rests in Carmichael’s argument: when structural violence–systemic institutional stigmatization
not defined in this paper's own words; second network stage producing explicit 3D geometry
jumper2021-highly-accurate-protein-structure-prediction-alphafold
The network comprises two main stages. First, the trunk of the network processes the inputs through repeated layers of a novel neural network block that we term Evoformer to produce an N seq × N res array ( N seq , number of sequences; N res , number of residues) that represents a processed MSA and an N res × N res array that represents residue pairs. The MSA representation is initialized with the
not defined in this paper's own words; the frame- and torsion-based AF2 module replaced by diffusion
abramson2024-alphafold3
This is achieved by a substantial evolution of the AF2 architecture and training procedure (Fig. 1d ) both to accommodate more general chemical structures and to improve the data efficiency of learning. The system reduces the amount of multiple-sequence alignment (MSA) processing by replacing the AF2 evoformer with the simpler pairformer module (Fig. 2a ). Furthermore it directly predicts the raw
not defined in this paper's own words; analyzed people selected from the database
benchimol2015-record-routinely-collected-health-data
The methods of study population selection (such as codes or algorithms used to identify subjects) should be listed in detail. If this is not possible, an explanation should be provided.
people selected from the database population using codes and algorithms
benchimol2015-record-routinely-collected-health-data
There are three levels of population hierarchy that are relevant in studies using routinely collected data and will be referred to throughout the statement. These populations include the source population, which represents that from which the database population is derived and hence about which the researchers want to make inferences; the database population, which is derived from the source popul
not defined in this paper's own words; combined discounted outcome and anticipation value
mellers2016-savouring-prediction-error-choice
The value of the pre-reward cue is determined by what follows the cue, which, under conventional temporal difference (TD) learning, would have been the reward itself ( Figure 1A-(i) ), discounted in time with a rate γ . Here, however, in addition to the reward itself, we have the anticipation of the reward that takes place continuously over time. Thus the total value of the predictive cue, Q is th
not defined in this paper's own words; the reward net of its effort cost, taken from the fitted computational model
Lockwood2022-distinct-neural-representations-for-prosocia
We created six model RDMs, which reflected the dissimilarity in self-effort, other effort, self-subjective value and other subjective value (from the winning computational model), and self reward and other reward.
Among them, superoxide dismutase (SOD) catalyzes the dismutation of ˙O 2 – to H 2 O 2 .
yao2018-ros-scavenging-mn-3-o-4-nanozymes
Superoxide Dismutase-Like Activity Superoxide dismutase is a kind of metalloenzyme that mainly distributed in microorganisms, plants and animals.
liu2021-a-review-on-metal-and-metal-oxide
not defined in this paper's own words; training on labelled PDB structures
jumper2021-highly-accurate-protein-structure-prediction-alphafold
Training with labelled and unlabelled data The AlphaFold architecture is able to train to high accuracy using only supervised learning on PDB data, but we are able to enhance accuracy (Fig. 4a ) using an approach similar to noisy student self-distillation 35 . In this procedure, we use a trained network to predict the structure of around 350,000 diverse sequences from Uniclust30 36 and make a new
In supervised learning, data are presented with example inputs and the corresponding outputs, and the objective is to construct a general rule that maps inputs to outputs.
liakos2018-machine-learning-in-agriculture-a
not defined in this paper's own words; the stage that tests whether a hypothesised relationship exists at all, by learning it from generated pairs
Davies2021-advancing-mathematics-by-guiding-human-intui
In the supervised learning stage, the mathematician proposes a hypothesis that there exists a relationship between X ( z ) and Y ( z ). By
not defined in this paper's own words in this sentence
jeantet2020-multi-sensor-loggers-sea-turtle-behaviour
We trained five supervised machine learning algorithms—(i) classification and regression trees (CART), (ii) random forest (RF), (iii) extreme gradient boosting (EGB), (iv) support vector machine (SVM), and (v) linear discriminant analysis (LDA)—to associate the seven diving behaviour categories with the corresponding patterns of different input variables.
not defined in this paper's own words; machine-learning classifier used for ADME behaviour
daina2017-swissadme-free-web-tool
Cheminformaticians developed different molecular descriptors mined from chemical structures. One of the most popular examples is the molecular fingerprint (FP), which consists in a sequence of bits defining the presence or absence of chemical features in a molecule. The FP2 method 9 is one archetype of topological (or path-based) FP, which considers all fragments of the molecular structure followi
not defined in this paper's own words; evidence base attached to checklist-item explanations
moher2009-prisma
In addition to the PRISMA Statement, a supporting Explanation and Elaboration document has been produced [18] following the style used for other reporting guidelines [19] – [21] . The process of completing this document included developing a large database of exemplars to highlight how best to report each checklist item, and identifying a comprehensive evidence base to support the inclusion of eac
not defined in this paper's own words; methodology, data, implementation, analysis, and interpretation supporting claims
munafo2017-manifesto-reproducible-science
Promoting transparency and open science. Science is a social enterprise: independent and collaborative groups work to accumulate knowledge as a public good. The credibility of scientific claims is rooted in the evidence supporting them, which includes the methodology applied, the data acquired, and the process of methodology implementation, data analysis and outcome interpretation. Claims become c
not defined in this paper's own words; implementation endpoint concerning long-term continuation
lewis2018-classification-causality-implementation-mechanisms
Implementation scientists have isolated eight outcomes as the desired endpoints of implementation efforts: acceptability, feasibility, appropriateness, adoption, penetration, fidelity, cost, and sustainability ( 1 ). Many of these outcomes are appropriately construed as latent variables, but others are manifest/observable in nature ( 30 ); a recent systematic review offers measures of these outcom
not defined in this paper's own words; maintenance or institutionalization as an implementation outcome
nilsen2015-implementation-theories-models-frameworks
Proctor et al. [ 126 ] have developed a framework of implementation outcomes that can be applied to evaluate implementation endeavours. On the basis of a narrative literature review, they propose eight conceptually distinct outcomes for potential evaluation: acceptability, adoption (also referred to as uptake), appropriateness, costs, feasibility, fidelity, penetration (integration of a practice w
strong and weak, divided over whether natural capital can be substituted
mavrommati2014-lake-socioeconomic-coupling
The main difference between the two paradigms is that strong sustainability rejects the major assumption of weak sustainability in that natural capital can be substituted by human-made capital (Daly 1996 ).
not defined in this paper's own words; development that meets present needs without using up what future generations will need
angelstam2013-transdisciplinary-research-definition
The societal process of sustainable development (SD) towards sustainability on the ground as defined in policies, requires place and area-based solutions that integrate social and ecological systems in spaces and places (Grodzynskyi 2005 ; Angelstam et al. 2013a ).
development that meets the needs of the present without compromising the ability of future generations to meet their own needs
bircher2014-defining-health-determinants
not defined in this paper's own words; the demonstration case - a phenomenon whose existing definitions the paper reports as vague, contradictory and not even agreed on what is to be sustained
jabareen2009-building-conceptual-framework-philosophy-definitions
Some have argued that the existing definitions of sustainable development are vague (Gow, 1992; Mozaffar, 2001), devoid of operative definitions (Villanueva, 1997), and fraught with contradictions (Redclift, 1987), and that the topic itself is confused (Berke & Conroy, 2000; Redclift, 1994). Others have pointed out that authors on the subject employ unclear symbolic rhetoric (Andrews, 1997; Solow,
not defined in this paper's own words; international health targets the estimates track
ferrari2024-global-burden-371-diseases
Detailed, comprehensive, and timely reporting on population health by underlying causes of disability and premature death is crucial to understanding and responding to complex patterns of disease and injury burden over time and across age groups, sexes, and locations. The availability of disease burden estimates can promote evidence-based interventions that enable public health researchers, policy
not defined in this paper's own words; the United Nations' 2015 agenda of seventeen goals
boakye2024-nursing-education-sustainable-development
The 2015 sustainable development goals (SDGs) codified an agenda to collectively advance people, the planet, prosperity, peace and partnership through cross‐sector collaboration
the ability to maintain sensitivity to stimuli
varpaei2024-postoperative-cognitive-dysfunction
capacity to retain focus over time
williams2020-struggle-human-attention
The stages propose a classification of research into three major fields. The first one is selective attention, which identifies attention as a process of the selection of stimuli. The second one is divided attention, which studies the response capacity of the subject to several simultaneous tasks. The third one is sustained attention, which examines the ability to retain attention for an amount of
not defined in this paper's own words; documentation tool for reproducible R analyses
mcmurdie2013-phyloseq-microbiome-analysis
One of the goals of the phyloseq project is to help close the gap in reproducible research that presently exists between pipeline results and the additional analyses required by investigators. This can be achieved when phyloseq is used (possibly with other R packages) in conjunction with documentation tools such as Sweave [32] , knitr [33] , iPython [83] Notebook invoking the rmagic extension, or
not defined in this paper's own words; the system used to create and process executable vignettes
gentleman2004-bioconductor-open-software-development
The Sweave system [ 26 ] was adopted for creating and processing vignettes. Once these have been written users can interact with them on different levels. The transformed documents are provided in Adobe's portable document format (PDF) and access to the code chunks from within R is available through various functions in the tools package. However, new users will need a simpler interface. Our first
not defined in this paper's own words; the authors' second name for the proposed third phenotype
malyshev2015-macrophage-plasticity-concept
Such a phenotype could be referred to as the M3 phenotype or the switching phenotype.
raises M2 and lowers M1 cytokines in a proinflammatory setting, and the reverse in an anti-inflammatory one
malyshev2015-macrophage-plasticity-concept
The data described above support the hypothesis of the existence of a particular macrophage phenotype, which increases the production of the M2 and decreases the production of the M1 cytokines in the proinflammatory microenvironment. On the contrary, this macrophage phenotype increases production of the M1 and decreases the production of the M2 cytokines in anti-inflammatory microenvironment.
a mixture comprising live microorganisms and substrate(s) selectively utilized by host microorganisms that confers a health benefit on the host
swanson2020-isapp-consensus-statement-synbiotics
the 1995 definition, which this paper replaces: mixtures of probiotics and prebiotics that beneficially affect the host
swanson2020-isapp-consensus-statement-synbiotics
Thus, synbiotics were loosely defined as mixtures of “probiotics and prebiotics that beneficially affect the host” 5 .
not defined in this paper's own words; a cumulative effect greater than the additive sum - and, for opposing stressors, a label that depends on which stressor is the reference
piggott2015-reconceptualizing-synergism-and-an
While the identification of a synergism or antagonism is generally straightforward when both stressors operate in the same direction (i.e., double positive or double negative; Folt et al. 1999 ; Dunne 2010 ), for opposing individual effects, the definition of synergism seems paradoxical because what is synergistic to one stressor's effect direction is antagonistic to the other stressor's effect di
not defined in this paper's own words; positive microbial interaction pattern
berg2020-microbiome-definition-re-visited-o
Microbes interact with one another, and these symbiotic interactions have diverse consequences for microbial fitness, population dynamics, and functional capacities within the microbiome [ 62 ]. These interactions can either be between microorganisms of the same species or between different species, genera, families, and domains of life. The interactive patterns within these webs may be positive (
`a cumulative effect of multiple stressors that are greater than the additive sum of effects produced by the stressors acting in isolation` - with antagonism for less than additive, and `a consensus on its operational definition ... still lacking`
piggott2015-reconceptualizing-synergism-and-an
Despite common use of “synergism” in the scientific literature, a consensus on its operational definition when classifying interactive effects is still lacking (Berenbaum 1989 ; Folt et al. 1999 ; Chou 2010 ; Dunne 2010 ; Vanhoudt et al. 2012 ). In the ecological multiple stressor context, the term most commonly relates to an additive effects model. Thus, synergism is used to define a cumulative e
not defined in this paper's own words; interacting stressors whose joint effect exceeds their sum
halpern2019-ocean-human-impact-pace
Third, multiple interacting stressors often produce synergistic rather than simply additive outcomes 24 , such that increasing intensity of individual stressors within the context of multiple stressors is likely to accelerate CHI faster than we modeled here.
not defined in this paper's own words; interactions larger than the sum of stressors
halpern2015-cumulative-human-impacts-ocean
Emerging evidence also suggests that stressor interactions are more commonly synergistic and mitigative than additive 23 .
Finally, synergistic interaction is observed when the combined effect of the applied PBs exceeds their additive effects when applied independently under the same conditions.
rouphael2018-synergistic-biostimulatory-action-designing-the-next-generation
We hypothesized that violation of the additivity of the analyzed RT or spectral amplitude measures would indicate synergistic interactions.
Trunk2015-effects-of-concurrent-caffeine-and-mobile-ph
different terms with the same, overlapping meanings
smith2022-parental-sleep-sick-child
not defined in this paper's own words; several terms with one meaning
powell2015-refined-compilation-implementation-strategies-eric
Research focusing on implementation strategies, defined as “methods or techniques used to enhance the adoption, implementation, and sustainability of a clinical program or practice” [ 1 ], has been prioritized in order to bridge the quality chasm in health and mental health services [ 2 - 5 ]. a However, efforts to identify, develop, and test implementation strategies have been complicated by a la
data are modelled after other ‘real data’, collected from the observation of individuals
gstrein2022-privacy-datafied-society
not defined in this paper's own words; artificial samples augmenting underrepresented classes
cirillo2021-bias-big-data-ai-open-science
To overcome this limitation, the field of machine learning has several tools, such as Generative Adversarial Networks, 59 that can be used to artificially generate synthetic data and augment underrepresented classes, such as skin lesion images. 60 This can allow neural networks to be trained with more samples of data that may be underrepresented, such as data of ethnic minorities.
not defined in this paper's own words; explicit syntheses answering formulated questions
page2021-prisma-systematic-review-reporting-guideline
Systematic reviews serve many critical roles. They can provide syntheses of the state of knowledge in a field, from which future research priorities can be identified; they can address questions that otherwise could not be answered by individual studies; they can identify problems in primary research that should be rectified in future studies; and they can generate or evaluate theories about how o
not defined in this paper's own words; review designs searched and updated for the guideline
bull2020-world-health-organization-physical-activity-sedentary-behaviour-guidelines
To update the systematic reviews, an agreed set of search terms, databases and search methods, as well as standardised data extraction protocols, were employed to update the evidence. A search for systematic reviews and pooled analyses of cohort studies was conducted for the period from 2017 up to September 2019. The following databases were searched: PubMed, CINAHL, MEDLINE, EMBASE, PsychInfo, Sp
not defined in this paper's own words; reviews used to assess existing implementation-mechanism evidence
lewis2018-classification-causality-implementation-mechanisms
Most implementation strategies likely act via multiple mechanisms, although it remains an empirical question whether one mechanism is primary and others are ancillary. It is also likely that the same mechanism might be involved in the operation of multiple implementation strategies. Initial assessment of strategy-mechanism linkages is made in the context of the broader scientific knowledge base ab
thermal annealing
sun2018-low-cost-polymer-donor-solar-cells
transient absorption
yang2017-phonon-upconversion-lead-halide-perovskites
not defined in this paper's own words; aesthetic preference that carries social-reputational meaning about status and merit
social-reputation-influences-on-liking
Liking art, although often perceived as more personal or idiosyncratic, is also associated with social reputation [ 9 , 20 , 21 ]. In sociological surveys, spending time viewing art or choosing to visit a museum is often argued to be driven by desires to join or distinguish oneself from certain social groups (e.g., [ 9 , 15 ]). Affiliation with the arts has been connected to higher education, stat
not defined in this paper's own words; in Bourdieu, the means by which high socioeconomic groups distinguish themselves, “such as musical, artistic and culinary tastes”
kamphuis2015-bourdieu-cultural-capital-food-choices
Bourdieu depicted how high socioeconomic groups distinguish themselves from low socioeconomic groups through their ‘taste’ for various lifestyle attributes, such as musical, artistic and culinary tastes [ 17 ].
disparity in knowledge and research focus across organisms
troudet2017-taxonomic-bias-biodiversity-data
This bias stems from disparities in our knowledge of different organisms, and in the extent to which they are the focus of scientific research, across a wide range of biological disciplines.
taxonomic chauvinism
troudet2017-taxonomic-bias-biodiversity-data
not defined in this paper's own words; hierarchical classification schemes limited to one domain and a single relationship type - weaker than an ontology by this paper's definition
djoumbou-feunang2016-classyfire-automated-chemical-clas
Taxonomies are simplistic schemes that help in the hierarchical classification of concepts or objects [ 1 ]. They are usually limited to a specific domain and to a single relationship type connecting one node to another. Ontologies share the hierarchical structure of taxonomies. In contrast to taxonomies, however, they often have multiple relationship types and are really designed to provide a for
not defined in this paper's own words; prior classifications of implementation strategies
powell2015-refined-compilation-implementation-strategies-eric
A number of taxonomies of implementation strategies have been developed, in part, to address these shortcomings pertaining to the published literature, e.g. , [ 10 , 15 - 18 ]. Powell et al. [ 10 ] reviewed 41 compilations and reviews of implementation strategies and summarized them according to their foci and disciplines/clinical specialties that they represented (this can be found in Table One o
central memory
martin2018-memory-cd8-t-cell-definition
traditional Chinese Medicine
bai2022-depression-concept-china-history, panossian2021-adaptogenic-concept
not defined in this paper's own words; apparent imbalances produced by sequencing or mapping errors
lawrence2013-genomic-ranges-software
Figure 6 was constructed using the packages and features described above with very little programming effort needed to specialize the computations to this example. Most computational biologists and other interested investigators could easily carry out these steps. We can conclude that allelic imbalance in CTCF binding events is frequently detectable but, for the data considered, the apparent imbal
not defined in this paper's own words; processing, storage, batch, and chip effects affecting accuracy
horvath2013-dna-methylation-age-human-tissues
A host of technical artifacts could explain differences in predictive accuracy: for example, variations in sample processing, DNA extraction, DNA storage effects, batch effects, and chip effects
an umbrella term used without critical consideration
brenner2020-technology-dependent-concept
This concept analysis shows that the term technology dependent continues to be widely used as an umbrella term for a large group of children, without much evidence of any critical consideration of its use.
refers to a wide range of clinical technology to support biological functioning across a dependency continuum, for a range of clinical conditions
brenner2020-technology-dependent-concept
Specifically, in the field of educational technology, some studies found that students do not show technostress, a type of stress related to the implementation of technologies, due to students’ extensive knowledge of technologies [ 6 ].
fernandezbatanero2021-impact-of-educational-technology-on-teacher-stress
not defined in this paper's own words; strain caused by having to cope with technology
doring2022-videoconference-fatigue
Handling a VC system’s diverse technological features can create technostress [ 101 ] that might lead to techno-exhaustion [ 112 ] as one aspect of videoconference fatigue.
not defined in this paper's own words in this sentence
bosque2021-blood-flow-temperature-hyperthermia
The increase in temperature produces a corresponding rise in blood flow, both in the tumour and in the healthy tissue.
not defined in this paper's own words; tested at 25°C, 40°C and 60°C
matyusuf2020-silver-nanoparticle-synthesis-optimization
The SPR bands became sharper and shifted to shorter wavelengths when the temperature increases, indicating decrease in particle size.
not defined in this paper's own words; fluctuation of temperature about its mean
pendergrass2017-precipitation-variability-warmer-climate
In contrast to precipitation variability, temperature variability (Fig. S4 ) does not change systematically with warming, with the exception of high latitude winter where it decreases in association with sea ice decline 38 , 39 .
not defined in this paper's own words; year-to-year variation in temperature
ray2015-climate-variation-crop-yield
This is because of the continental climate of Eastern Europe, which causes a greater amplitude of temperature variability 44 .
However, before a label is assigned, the auditory system must first learn a ‘template’ corresponding to the specific acoustic structure.
Kumar2014-representations-of-specific-acoustic-pattern
a separately distributable presentation component used to render or brand reports
ewels2016-multiqc-analysis-results
MultiQC supports a lot of common bioinformatics tools but it is inevitable that research groups may have their own bespoke scripts or require other customization. To accommodate this, MultiQC is built in such a way that custom code can be tied into its functionality easily. Code hooks allow external plugins to access and modify the internal workings of the program. The use of Python setuptools ent
not defined in this paper's own words; report rendering definition
ewels2016-multiqc-analysis-results
MultiQC is written in Python and run on the command line; specified directories are searched recursively for any recognized files. Submodules for each supported tool are run, querying input files using configurable search settings. If any log files are found they are parsed, otherwise the module exits silently. Once all submodules have finished, the specified template is loaded and parsed using th
One approach is to analyze spike trains from the perspective of a downstream target. Here, we operationally defined temporal coding as a reliability profile that peaks at a timescale shorter than the maximal tested timescale, but in fact, we placed rate/temporal coding on a continuous scale. This approach, which does not depend on any reconstruction filter, is based on a spike distance metric that involves convolving spike trains with kernels of gradually increasing temporal support ( Schreiber et al., 2003 ). Clearly, various kernels and other distance metrics are plausible ( Victor and Purpura, 1996 ; van Rossum, 2001 ).
Levi2022-error-correction-and-improved-precision-of-s
not defined in this paper's own words; the contested category the result is placed in
Levi2022-error-correction-and-improved-precision-of-s
Thus, we hypothesize that PYR-to-PYR transmission will also result in temporal coding by the postsynaptic PYRs.
not defined in this paper's own words; patient events arranged by time
rajkomar2018-scalable-accurate-deep-learning-electronic-health-records
We developed a single data structure that could be used for all predictions, rather than requiring custom, hand-created datasets for every new prediction. This approach represents the entire EHR in temporal order: data are organized by patient and by time. To represent events in a patient’s timeline, we adopted the FHIR standard. 75 FHIR defines the high-level representation of healthcare data in
the relative sequence in which alterations arise, inferred from one sample per patient
cheng2012-temporal-order-pathway-alterations
We have previously described a computational approach, called Retracing the Evolutionary Steps in Cancer (RESIC), to determine the temporal sequence of genetic alterations during tumorigenesis from cross-sectional genomic data of tumors at their fully transformed stage.
not defined in this paper's own words; framework enabling faster prototyping
voulodimos2018-deep-learning-for-computer-vision
Among the most prominent factors that contributed to the huge boost of deep learning are the appearance of large, high-quality, publicly available labelled datasets, along with the empowerment of parallel GPU computing, which enabled the transition from CPU-based to GPU-based training thus allowing for significant acceleration in deep models' training. Additional factors may have played a lesser r
not defined in this paper's own words; open-source machine-learning library used by CellProfiler plugins
mcquin2018-cellprofiler-next-generation-image
Running neural network models requires the installation of certain deep learning frameworks that are distributed separately, such as TensorFlow or Caffe. TensorFlow [ 19 ] is an open-source software library for machine learning that interfaces with Python and is compatible with CellProfiler when installed from source on Linux, Mac, and more recently, Windows. Caffe [ 20 ] is a deep learning framew
not defined in this paper's own words; specialized distributed CPU/GPU array framework
harris2020-array-programming-numpy
The community’s efforts to fill this gap led to a proliferation of new array implementations. For example, each deep-learning framework created its own arrays; the PyTorch 38 , Tensorflow 39 , Apache MXNet 40 and JAX arrays all have the capability to run on CPUs and GPUs in a distributed fashion, using lazy evaluation to allow for additional performance optimizations. SciPy and PyData/Sparse both
not defined in this paper's own words; and the thing dismissed as mere
Laubach2018-what-if-anything-is-rodent-prefrontal-cortex
It is easy to dismiss this issue as one of “mere” semantics or terminology, but it has significant, long-term consequences for our field.
not defined in this paper's own words; with a small t, the units of any specialized knowledge field; with a large T, the study of specialized language. One word, two objects, distinguished only by capitalisation
faberbentez2009-cognitive-shift-terminology-specialized-translation
As has often been observed, terminology is a word that can either begin with an upper or lower-case letter. When terminology begins with a small t, it refers to the units in any specialized knowledge field. When it begins with a large T, it refers to the study of specialized language.
not defined in this paper's own words; code quality arising from modular single-purpose functions
wilson2017-good-enough-practices-scientific-computing
The core realization in these practices is that being readable , reusable , and testable are all side effects of writing modular code, i.e., of building programs out of short, single-purpose functions with clearly-defined inputs and outputs [ 12 ]. Much has been written on this topic [ 12 – 14 ], and this section focuses on practices that best balance ease of use with benefit for you and collabora
not defined in this paper's own words; code structured so functions and classes can run independently
wilson2014-best-practices-scientific-computing
Tests check to see whether the code matches the researcher's expectations of its behavior, which depends on the researcher's understanding of the problem at hand [57] – [59] . For example, in scientific computing, tests are often conducted by comparing output to simplified cases, experimental data, or the results of earlier programs that are trusted. Another approach for generating tests is to tur
not defined in this paper's own words; a public project of uniformly processed tumour genomic data
cheng2012-temporal-order-pathway-alterations
When applied to primary glioblastoma (GBM) copy number data from The Cancer Genome Atlas (TCGA) project, RESIC identified a temporal order of pathway alterations consistent with the order of events in secondary GBMs.
not defined in this paper's own words; the source of the breast carcinoma and lung adenocarcinoma expression data
song2015-megena-gene-coexpression-network
the gene expression data in breast carcinoma and lung adenocarcinoma from The Cancer Genome Atlas (TCGA)
not defined in this paper's own words; a qualitative method that codes open answers and groups the codes into themes
hull2017-social-camouflaging-autism
Analysis followed the six phases of thematic analysis recommended by Braun and Clarke ( 2006 ) with the aim of identifying patterns of information within the data which answered the research questions.
not defined in this paper's own words; coding qualitative material and grouping the codes into recurring themes
michalski2023-community-wellbeing-definition
Thematic analysis was conducted using NVivo 12 (QSR International™).
a precondition for communication in both directions, sending and receiving
garciapelegrin2021-evolution-storytelling
Theory of Mind has often been described as an epicentral feature for effective communication, because, to partake in fruitful communication, all parties involved might need to infer the mental state of one another, be that for transmitting information or for receiving it (Sperber and Wilson, 1995 ).
not defined in this paper's own words; alternate label for mentalizing
norenzayan2012-mentalizing-deficits-belief-personal-god
Specifically, the social-cognitive capacity to represent and reason about minds-termed mentalizing, theory of mind, or mind perception [6] , [7] -also enables the mental representation of God and other supernatural agents [2] , [7] .
the ability to infer their conspecifics mental states
garciapelegrin2021-evolution-storytelling
not defined in this paper's own words; the band between too little activation to work and enough to poison the patient; the paper's organising idea for engineering CARs
sterner2021-car-t-cell-therapy-current-limitat
In other words, the CAR-T cell must remain within its therapeutic window to be clinically effective as overshooting the therapeutic window will lead to toxicity.
the therapeutic window stated for CAR-T cells - a lower threshold for efficacy and an upper one for toxicity
sterner2021-car-t-cell-therapy-current-limitat
In order to achieve efficacious therapeutic responses, a CAR-T cell antigen-binding domain must bind its target epitope and reach a minimum threshold level to induce CAR-T cell activation and cytokine secretion.
existing and reused: an external vocabulary adopted so the data links outward, which is what the project switched to
lod2023-feminist-wfpp
Third, an important step in the methodology is to analyze and evaluate existing thesauri and authority files such as the Getty Art & Architecture Thesaurus (AAT), Friend of a Friend (FOAF), Virtual International Authority File (VIAF), Gemeinsame Normdatei (GND), and Wikidata regarding their usability for feminist film historiography.
project-specific: built bottom-up for this resource's own staff and users, which was the original plan
lod2023-feminist-wfpp
While the initial goal of the project was to develop a thesaurus tailored to the needs of WFPP’s staff and users, it became clear as the project progressed that a more promising approach would be to focus on reusing existing thesauri to make the data FAIR.
not defined in this paper's own words; the 6–12 Hz oscillation of the local field potential
christensen2021-perineuronal-nets-grid-cell-network
However, our findings suggest that in addition to input from medial septum, hippocampal theta is strongly influenced by the theta in MEC.
not defined in this paper's own words; the rhythm that paces the sequences
Drieu2019-hippocampal-sequences-during-exploration-mec
During exploration, within single cycles of the ongoing theta rhythm that dominates hippocampal local field potentials, place cells form precisely ordered sequences of activity.
We refer to the stimulus type with a modulation rate in theta band range (4–7 Hz) as a theta (θ) sound, the stimulus type with modulation rate in the alpha band range (8–12 Hz) as an alpha ( α ) sound, and the stimulus type with modulation rate in the gamma band range (30–45 Hz) as a gamma (γ) sound.
Teng2017-concurrent-temporal-channels-for-auditory-pr
Theta sequence. Sequential activation of hippocampal cell assemblies paced by the ongoing theta rhythm (~8 Hz) and representing the ongoing trajectory at a highly accelerated rate. For instance, when a rat successively traverses place fields A, B, and C (which lasts on the order of a second), in the overlapping region, ongoing theta cycles contain spikes A, B, and C in the same order (within only ~150 ms). Theta sequences typically span one theta cycle, but longer sequences have also been described.
Drieu2019-hippocampal-sequences-during-exploration-mec
not defined in this paper's own words; the review's object, defined in its own glossary
Drieu2019-hippocampal-sequences-during-exploration-mec
Several studies have challenged the idea that phase precession could entirely account for theta sequences, by showing that a moderate addition of time jitter to experimental spike trains resulted in preservation of phase precession but a reduced prevalence of theta sequences (Dragoi and Buzsáki, 2006 ; Foster and Wilson, 2007 ; Itskov et al., 2008 ). This suggested that theta sequences required pr
not defined in this paper's own words; thinking with and through things
malafouris2018-mind-material-engagement
The specific argument that MET is putting forward in this connection is that, more often than not, our ways of think-ing are better described as modes of thing-ing . To explain: thinking is usually understood as something we do about things in the absence of things. On the contrary thinging denotes the kind of thinking we do primarily with and through things. For the material engagement approach w
the real-time gathering of neural, bodily, and material mind-stuff
malafouris2018-mind-material-engagement
I said before that mind-stuff do not have fixed locations or set properties: they equally pertain to brains, bodies and things. A neural activation pattern, a movement of the hand, a line produced on a piece of white paper: they are all mind-stuff. This, of course, does not mean that mind-stuff do not also differ. However, it is their coming together in real time and space that matters so far as m
not defined in this paper's own words; spatial conformation predicted from sequence
jumper2021-highly-accurate-protein-structure-prediction-alphafold
Proteins are essential to life, and understanding their structure can facilitate a mechanistic understanding of their function. Through an enormous experimental effort 1 – 4 , the structures of around 100,000 unique proteins have been determined 5 , but this represents a small fraction of the billions of known protein sequences 6 , 7 . Structural coverage is bottlenecked by the months to years of
not defined in this paper's own words; the composite's structure, rendering a high surface area
tao2020-cellulose-nanocrystal-graphene-oxide-adsorption
The three-dimensional structure of the composite material rendered a high surface area and electrostatic attraction, resulting in increased adsorption capacity of the CNCs-GO for Levo-HCl.
time-lagged independent component analysis
mardt2018-vampnets-deep-learning-molecular-kinetics
time-structure based independent component analysis
brandani2024-bayesian-simulations-chromatin-condensation
Due to the capacitance and resistance of the neural cell membrane, the membrane potential and hence the firing rate is approximately a low-pass filtered version of the synaptic current. A common simple dynamic model of neurons that captures this phenomenon is the differential equation ( Eq 7 ) known as the firing-rate equation [ 22 ]. (7) Here, τ cont is the membrane time constant, v is post-synaptic firing rate, I ( t cont ) is the synaptic current
Rahman2019-a-dynamic-network-model-of-temporal-receptiv
not defined in this paper's own words; the integration time that bounds the positive claim - LONGER THAN 240 ms, with faster decisions possibly BYPASSING THE FOF
Erlich2015-distinct-effects-of-prefrontal-and-parietal
Inactivation of the FOF induced substantial performance impairments that were quantitatively best described as an impairment in the output pathway of an evidence accumulator with a long integration time constant (>240 ms).
Many natural systems exhibit nonlinear dynamics and can undergo a transition into a qualitatively different state when a critical threshold is crossed
klose2020-interacting-tipping-elements
Those systems are called tipping elements and the corresponding threshold in terms of a critical parameter is the tipping point of the system.
a climate-science term reused for loosely coupled bistable bacterial groups
lahti2014-tipping-elements-intestinal-ecosystem
The emerging picture is that rather than overarching alternative states corresponding to distinct community types, the natural variation of the human intestinal microbiota is reflected in specific bacterial groups representing ‘tipping elements’ that are only loosely coupled
specific components of the intestinal microbiota that exhibit alternative stable states linked to the overall ecosystem state and our physiology
lahti2014-tipping-elements-intestinal-ecosystem
the corresponding threshold in terms of a critical parameter
klose2020-interacting-tipping-elements
the particular bacterial abundance value that maximizes the potential function of a bistable system
lahti2014-tipping-elements-intestinal-ecosystem
not defined in this paper's own words; taxonomy for proximal physical micro-environment interventions
bucher2020-nudges-real-life-food-purchasing
In order to maximize the yield of our search, we adopted an elaborate search strategy including general nudging terms (e.g., nudging and choice architecture) as well as more specific nudging terms (e.g., signage) according the TIPPME typology (Table 1 ). Types of nudges considered in other categorizations were evaluated on their applicability to the current review [ 14 , 15 ]. As a result, the sea
typology distinguishing availability, position, functionality, presentation, size, and information interventions
bucher2020-nudges-real-life-food-purchasing
So far, numerous nudging studies have been performed describing a wide range of interventions, for example placing healthier foods at convenient and visible locations in supermarkets (e.g., position nudge) or making healthy foods salient through the use of signage (e.g., information nudge). To establish more conceptual clarity regarding nudging interventions and to facilitate evidence synthesis, t
not defined in this paper's own words; the frequency axis along which the class's residual variability was then tested
Goyernd-a-novel-class-of-inferior-colliculus-princip
Combined, these results suggest that variability in the intrinsic physiology of VIP neurons is at least in part due to their localization along the tonotopic axis of the ICc and that the membrane properties of VIP neurons tend to be faster in lower frequency regions of the ICc.
not defined in this paper's own words; the ordered map of characteristic frequency, here DOUBLE and REVERSED at a central strip
Wong2019-tonotopic-and-non-auditory-organization-of-t
The lowest CF band was found in the middle, dividing the dorsal IC into two reversed tonotopic gradients.
not defined in this paper's own words; software class assigned to eggNOG-mapper
cantalapiedra2021-eggnog-mapper-v2-functional-annotation
Even though automated functional annotation of genes represents a fundamental step in most genomic and metagenomic workflows, it remains challenging at large scales. Here, we describe a major upgrade to eggNOG-mapper, a tool for functional annotation based on precomputed orthology assignments, now optimized for vast (meta)genomic data sets. Improvements in version 2 include a full update of both t
not defined in this paper's own words; software that creates an integrated report
ewels2016-multiqc-analysis-results
We present MultiQC, a tool to create a single report visualising output from multiple tools across many samples, enabling global trends and biases to be quickly identified. MultiQC can plot data from many common bioinformatics tools and is built to allow easy extension and customization.
not defined in this paper's own words; an instrument an artist uses, like a brush or an algorithm, as opposed to an author
can-computers-create-art
In short, in our present understanding, all art algorithms, including methods based on machine learning, are tools for artists; they are not themselves artists.
includes consultation of managers specifying principles for identifying priority groups, by applying official guidelines to the local level
zumstein2020-severe-persistent-mental-illness
not defined in this paper's own words; and here it is remarkably cheap to induce: not attention, not training, but being told the choice is for an IMPORTANT task rather than an unspecified one
Bernal2022-top-down-modulation-impairs-priming-suscepti
The aim of the present research is to evaluate the priming susceptibility on decisions. Our working hypothesis is that mere repetition of an option (repetition priming) or its emotional valence (emotional priming) would prime the choice preference, but this susceptibility to priming could be impaired by the task for which it is chosen (top-down modulation)
not defined in this paper's own words; source/label-driven processing dissociated from the artwork's visual features
humans-versus-ai-whether-and-why-we-prefer-human
In addition, though some studies also used a randomization of labels (as in the present study; e.g., Chiarella et al., 2022 ), our study was unique in its use of only AI-created images, across many more stimuli, in a within-subjects design. Statistically, this ensured higher power and increased confidence in our findings. In other words, participants were given the opportunity to judge both human-
detect animals, crop around anchors, then detect parts for each centered animal
pereira2022-sleap-multi-animal-pose-tracking
In the top–down approach, we first detect all animals and then locate their body parts (Fig. 3b ). In the first stage, a neural network detects an anchor point (for example, centroids) on each animal, which can then be recovered via local peak finding. In the second stage, the anchor points are used to generate anchor-centered sub-images cropped around each animal, which are then provided as input
not defined in this paper's own words; simulation beginning from global target behaviors or properties
farisco2018-large-scale-brain-simulation-and-disorders-o
within a top-down approach (i.e., focusing on global, emerging dynamics of the brain, and starting from target behaviors or properties implementing elements and interactions that enable them), the simulation would be able to simulate the macro-level organization and behavior of the whole brain (as long as they are adequately simplified). This kind of large-scale brain simulation might be able to a
a Wikipedia page together with pages linking to it or linked from it
wu2015-production-information-attention-economy
We define a topic as such a page, together with all of its neighbors — articles linked by it or linking to it, subsequently to its creation (see Methods).
a distributional cluster of semantically related words estimated from documents
schwartz2013-personality-language-social-media
The second type of linguistic feature, topics , consists of word clusters created using Latent Dirichlet Allocation (LDA) [72] , [73] . The LDA generative model assumes that documents (i.e. Facebook messages) contain a combination of topics, and that topics are a distribution of words; since the words in a document are known, the latent variable of topics can be estimated through Gibbs sampling [7
not defined in this paper's own words; branching architecture of the phylogeny
isaac2007-mammals-edge-conservation-priorities-threat-phylogeny
EDGE priorities are also robust to several other forms of uncertainty. Like all phylogenetic methods, the precise EDGE scores are dependent on the topology and branch lengths of the phylogeny. However, errors in the phylogeny are unlikely to alter the identity of high-ranking species, particularly for clades of several hundred species. Topological uncertainty is usually expressed in supertrees as
not defined in this paper's own words; branching structure of a phylogenetic tree
price2010-fasttree-approximately-maximum-likelihood-trees
We recently described a scalable method for inferring phylogenies, FastTree 1.0 [2] . FastTree 1.0 is based on the “minimum-evolution” principle – it tries to find a topology that minimizes the amount of evolution, or the sum of the branch lengths. FastTree 1.0 uses a heuristic variant of neighbor joining [3] , [4] to quickly find a starting tree and uses nearest-neighbor interchanges (NNIs) to re
peripheral memory
martin2018-memory-cd8-t-cell-definition
tags per million
ramilowski2015-ligand-receptor-signalling-network
not defined in this paper's own words
forenzo2024-deep-learning-bci-continuous-tracking
Overall, these results show that DL-based decoders improve when given increasing amounts of training data and may even keep improving past the seven sessions studied here.
not defined in this paper's own words; data used to fit the predictor
horvath2013-dna-methylation-age-human-tissues
To ensure an unbiased validation in the test data, I only used the training data to define the age predictor. As detailed in Materials and methods and Additional file 2 , a transformed version of chronological age was regressed on the CpGs using a penalized regression model (elastic net). The elastic net regression model automatically selected 353 CpGs (Additional file 3 ). I refer to the 353 CpGs
not defined in this paper's own words; labelled data required by CNNs
voulodimos2018-deep-learning-for-computer-vision
Some of the strengths and limitations of the presented deep learning models were already discussed in the respective subsections. In an attempt to compare these models (for a summary see Table 2), we can say that CNNs have generally performed better than DBNs in current literature on benchmark computer vision datasets such as MNIST. In cases where the input is nonvisual, DBNs often outperform othe
an inferred path that denotes transcriptional similarity, not necessarily a biological process
luecken2019-single-cell-rnaseq-best-practices
Inferred trajectories do not have to represent biological processes. In the first instance, these only denote transcriptional similarity.
not defined in this paper's own words; what a sequence represents
Drieu2019-hippocampal-sequences-during-exploration-mec
As a rat explores an environment, place cell assemblies activate in sequence and thus form “behavioral” (slow time scale) sequences representing the ongoing trajectory in real time.
not defined in this paper's own words; proteins that bind DNA recognition sites to control transcription
janky2014-iregulon-gene-regulatory-network
Sequence-specific transcription factors (TFs) bind to their DNA recognition sites within cis -regulatory elements and thereby contribute to the control of the transcriptional initiation rate of their target genes
not defined in this paper's own words; short duplication-rich plant regulatory genes
emms2015-orthofinder-whole-genome-comparisons
Given that OrthoFinder has increased accuracy over other methods and that gene length bias has been eliminated from orthogroup inference, we sought to provide an additional demonstration of the utility of OrthoFinder for the inference of orthogroups. To do this we selected plant transcription factors as they are short genes and will thus suffer from low rates of recall in assignment to orthogroups
not defined in this paper's own words; third demonstrated target class
kayaokur2019-cut-tag-for-efficient-epigenomic-p
Many chromatin features play critical roles in regulating gene expression. A complete understanding of gene regulation will require the mapping of specific chromatin features in small samples of cells at high resolution. Here we describe Cleavage Under Targets and Tagmentation (CUT&Tag), an enzyme-tethering strategy that provides efficient high-resolution sequencing libraries for profiling diverse
45 Transfer is a dynamic, not static, process that requires learners to actively choose and evaluate strategies, consider resources and surface information, and, when available, to receive or seek feedback to enhance these adaptive skills.
hattie2016-learning-strategies-a-synthesis-and-conceptual-model
not defined in this paper's own words; cross-site model transfer limited by unharmonized inputs
rajkomar2018-scalable-accurate-deep-learning-electronic-health-records
Our study also has important limitations. First, it is a retrospective study, with all of the usual limitations. Second, although it is widely believed that accurate predictions can be used to improve care, 4 this is not a foregone conclusion and prospective trials are needed to demonstrate this. 69 , 70 Third, a necessary implication of personalized predictions is that they leverage many small da
constructed narrowly within R&D or broadly up to health outcomes
vanderlaan2015-translational-research-concept
This overview shows that the gap TR is supposed to bridge can be constructed in rather narrow as well as quite broad ways.
not defined in this paper's own words; the distance between what research produces and what reaches use or health
vanderlaan2015-translational-research-concept
When discussing TR, then, one should be aware that there is not just one translational gap; there are many gaps.
a label with strong rhetorical and moral force, not a neutral description
vanderlaan2015-translational-research-concept
Moreover, as several authors have noted, the label TR is not a neutral description of those diverse kinds of activities; it has a strong rhetorical as well as moral force [ 65 , 78 ].
an attempt to bridge a supposed gap between knowledge produced at the lab bench and its use at the clinical bedside
vanderlaan2015-translational-research-concept
in the dominant view, equated with early clinical trials
vanderlaan2015-translational-research-concept
As a result, TR is equated with phase I or II clinical trials, and the activities proposed to stimulate TR aim to facilitate the step from animal studies to such trials.
between Semitic languages: preserves the same indeterminacy on both sides, so it narrows candidates instead of multiplying them
rusinek2023-mehdie
The similarity between semitic languages, however, means that direct transliteration between semitic languages would be much more efficient in creating candidates for matching that transliteration into Latin script languages.
into Latin script: the usual move, which fails here because it requires vowels the source never wrote
rusinek2023-mehdie
Therefore, transliteration to latin script could not deduce an acceptable transliteration.
not defined in this paper's own words; the anchoring region, least characterised of the four, and the one changed to accommodate the others
sterner2021-car-t-cell-therapy-current-limitat
The hinge or spacer region is defined as the extracellular structural region that extends the binding units from the transmembrane domain.
the least characterised part of the construct, and the review explains the mechanism of that ignorance: it is the piece that gets changed whenever another piece needs to fit
sterner2021-car-t-cell-therapy-current-limitat
The effect of one transmembrane compared to another on CAR function is not well studied as the transmembrane domain is frequently changed based on the requirements of the extracellular spacer region or the intracellular signaling domains.
not defined in this paper's own words
teyssier2015-photonic-crystals-chameleon-colour-change
Our histological and transmission electron microscopy (TEM) analyses in five adult males, four adult females and four juveniles revealed that, unlike other lizards 7 14 18 the skin of panther chameleons consists of two superposed thick layers of iridophore cells ( Fig. 1c ) containing guanine crystals of different sizes, shapes and organizations ( Fig. 1d,e ).
not defined in this paper's own words; imaging used to judge the film's structural quality
kim2015-large-area-multilayer-hexagonal-boron-nitride
the samples were characterized by transmission electron microscopy (TEM)
not defined in this paper's own words; visibility of review rationale and procedures
page2021-prisma-systematic-review-reporting-guideline
Systematic reviews serve many critical roles. They can provide syntheses of the state of knowledge in a field, from which future research priorities can be identified; they can address questions that otherwise could not be answered by individual studies; they can identify problems in primary research that should be rectified in future studies; and they can generate or evaluate theories about how o
the decision is shown through attention maps a clinician can check
tiulpin2018-knee-osteoarthritis-deep-learning
In this study, we present a new transparent computer-aided diagnosis method based on the Deep Siamese Convolutional Neural Network to automatically score knee OA severity according to the Kellgren-Lawrence grading scale.
Research should be reported transparently so that readers can follow what was planned, what was done, what was found, and what conclusions were drawn.
vonelm2007-strobe
not defined in this paper's own words; disclosure mechanism that exposes design and conduct deficiencies
schulz2010-consort
Diligent adherence by authors to the checklist items facilitates clarity, completeness, and transparency of reporting. Explicit descriptions, not ambiguity or omission, best serve the interests of all readers. Note that the CONSORT 2010 Statement does not include recommendations for designing, conducting, and analysing trials. It solely addresses the reporting of what was done and what was found.
convergent focusing of mental systems and capacities on narrative events
bal2013-fiction-reading-empathy-emotional-transportation
According to Gerrig [12] , when people read a fictional narrative, they may become fully immersed into the story, which presents an alternative narrative world that is distant from the real world. While reading, people become transported into this narrative world, which often has been referred to a ‘being lost in a book’ [41] . Fiction can be an escape from the current world and by means of readin
the felt entry into a fictional world while retaining contact with the actual world
dijkstra2016-pronouns-literary-reading-perspective
Immersion is a multidimensional experience based on factors, whose contribution to the experience of being immersed varies with the situation. Factors which often reoccur in notions of immersion in narratives include the experience of mental imagery, emotional engagement with protagonists, transportation into the story world, and attention during reading [ 5 , 15 ]. Experiencing imagery during nar
This method is called triangulation (using multiple methods)
rahimi2024-saturation-qualitative-research
not defined in this paper's own words; the combination of investigators, methods and data sets, used here to converge perspectives on one phenomenon
fixsen2020-orthorexia-social-construction
We chose triangulation (investigator, method, and data triangulation) to capture distinctive dimensions, increase data richness, and converge different information on the same phenomenon ( Carter et al., 2014 ).
AS OPERATIONALISED HERE, THE PEAK CALLS OF A DIFFERENT METHOD. CTCF truth is CUT&RUN's peak list; accessibility truth is ATAC-seq's. THE WORD `TRUE` IS DOING WORK THAT NO EXPERIMENT IN THIS PAPER DOES, and the paper is explicit about which method supplied each list
kayaokur2019-cut-tag-for-efficient-epigenomic-p
To determine if true CTCF binding sites could be distinguished from accessible features by read depth, we compared the CUT&Tag read count at high-confidence CTCF sites (defined by peak-calling on CUT&RUN data 18 ) to the CUT&Tag read count at accessible sites (defined by peak-calling on ATAC-seq data 23 ).
not defined in this paper's own words; high-level targeted sites separated statistically
kayaokur2019-cut-tag-for-efficient-epigenomic-p
CUT&Tag should be suitable for the 10× Genomics encapsulation system 13 by adaptation of their recently announced ATAC-seq single-cell protocol 29 . Adaptability to high-throughput single-cell platforms is possible for CUT&Tag because adapters are added in bulk, whereas previous single-cell adaptations of antibody-based profiling methods, including ChIP-seq 30 , ChIL-seq 28 , and CUT&RUN 25 requir
not defined in this paper's own words in this sentence
jeantet2020-multi-sensor-loggers-sea-turtle-behaviour
(i) ‘Sensitivity’ = TP/(TP + FN), also called true positive rate , hit rate or recall , measures the ability of a method to detect the target behaviour among other behaviours;
not defined in this paper's own words; share of true clusters recovered
foley2021-colocalization-algorithm-genetic-risk
The criteria were: accuracy, which is an overall measure of the classification of traits into clusters; true positive rate (TPR) and false positive rate (FPR), see Methods for more details.
not defined in this paper's own words; quality signal associated with peer reproducibility
sandve2013-ten-simple-rules-reproducible-computational-research
Making reproducibility of your work by peers a realistic possibility sends a strong signal of quality, trustworthiness, and transparency. This could increase the quality and speed of the reviewing process on your work, the chances of your work getting published, and the chances of your work being taken further and cited by other researchers after publication
used to refer to enhanced trust in ordinary nursing leadership
hugelius2025-trust-nursing-crisis-leadership
traumatic stress symptoms
taylor2020-covid-stress-syndrome
true skill statistic
thuiller2019-uncertainty-global-biodiversity-scenarios
macrophages infiltrating tumor tissue or the tumor microenvironment
chen2023-macrophages-immunoregulation-therapeutics
Macrophages in immunity are a significant type of adaptable immunocytes, performing an expansive range of capacities ranging from modulating tissue homeostasis, defending contrary to pathogens, and assisting injury recuperation. Macrophages penetrate tumor-affected tissues or infiltrate the microenvironment of various types of solid tumors characterized as TAMs. The cell inception of macrophages,
not defined in this paper's own words; macrophages recognized as an integral component of the tumor microenvironment
chen2023-macrophages-immunoregulation-therapeutics
Macrophages exist in various tissues, several body cavities, and around mucosal surfaces and are a vital part of the innate immune system for host defense against many pathogens and cancers. Macrophages possess binary M1/M2 macrophage polarization settings, which perform a central role in an array of immune tasks via intrinsic signal cascades and, therefore, must be precisely regulated. Many cruci
not defined in this paper's own words; heterogeneous macrophages within tumors
zhang2020-cancer-immunotherapy-tumor-infiltrating-immune-cells
Macrophages are phagocytic cells, comprising a heterogeneous population with complex phenotypic and functional properties in the TME. Macrophages can eliminate malignant cells through phagocytosis or through producing soluble factors to induce tumor cell apoptosis. 169 In addition to the direct tumor-killing capability, macrophages play important roles in modulating tumor progression through mecha
not defined in this paper's own words; relative stromal area within tumor tissue
bankhead2017-qupath-open-source-digital-pathology
flexibility beyond IHC scoring in TMAs, we applied texture-based analysis to calculate the tumor stromal percentage in whole face representative tumor sections stained with hematoxylin and eosin (H&E) from 312 patients with stage II colon cancer from the same cohort. Several studies have reported that a higher intratumoral stromal percentage correlates with a worse prognosis in patients with stage
stromal area relative to stromal and epithelial areas
bankhead2017-qupath-open-source-digital-pathology
A subset of 40 ‘training’ images was then identified for the pathologist to interactively train a random trees classifier to distinguish between tissue areas comprising tumor epithelium, stroma and ‘other’ (e.g. whitespace, mucin, normal muscle or necrosis). This required drawing around regions containing tissue of each class and annotating these accordingly. During this process, QuPath used all a
not defined in this paper's own words; the stimulus selectivity whose narrowing is read as evidence about the form of inhibition
Yavorska2016-somatostatin-expressing-inhibitory-interneur
For example, SOM-mediated lateral inhibition contributes to surround suppression in L2/3 visual cortical neurons, conferring tuning for stimulus size (Adesnik et al., 2012 ).
not defined in this paper's own words; what is compared across states
Chen2019-differential-cell-type-dependent-brain-state
Compared with inhibitory neurons, tuning selectivity of excitatory neurons was significantly increased (Fig.
not defined in this paper's own words; atomically thin, layered
branny2017-strain-induced-quantum-emitter-arrays
Optically active two-dimensional (2D) semiconductors with a high elastic strain limit 5 offer renewed opportunities for nanoscale strain engineering of three-dimensional quantum confinement
not defined in this paper's own words; atomically thin, of a single or few atomic layers
li2015-strain-textured-mos2-artificial-atoms
Straining two-dimensional (2D) materials 1 , 2 , 3 , 4 , 5 , 6 , 7 , 8 with a spatially varying ‘designer' strain can lead to new artificial materials with exotic properties.
not defined in this paper's own words; the Type (Strain) Genome Server, which supplies the classification evidence
meier-kolthoff2022-tygs-and-lpsn-a-database-tandem-fo
The List of Prokaryotic names with Standing in Nomenclature (LPSN) is an expert-curated authoritative resource for prokaryotic nomenclature and is available at https://lpsn.dsmz.de . The Type (Strain) Genome Server (TYGS) is a high-throughput platform for accurate genome-based taxonomy and is available at https://tygs.dsmz.de .
the Type (Strain) Genome Server, a high-throughput web server for genome-based prokaryote taxonomy
meierkolthoff2019-tygs-is-an-automated-high-throughput-platform
Here we introduce TYGS, the Type (Strain) Genome Server, a user-friendly high-throughput web server for genome-based prokaryote taxonomy, connected to a large, continuously growing database of genomic, taxonomic and nomenclatural information.
a pre-computational and essentialist classification practice that partitions variation into presumed average forms
matzig2024-palaeolithic-stone-tool-macroevolution
the study of different concepts/items through classifying phenomena based on commonalities or differences
downs2020-food-environment-typology
Universal Design for Learning
attwood2022-multiple-intelligences-semantics, hamilton2023-compassionate-pedagogy-neurodiversity
an antidote to bolt-on provisions for students with issues
hamilton2023-compassionate-pedagogy-neurodiversity
Fundamentally, UDL is an antidote to bolt-on provisions for students ‘with issues,’ who are not always well served by overworked staff and systems ( Williams, 2019 ).
copying variants in proportion to their existing population frequency
brand2019-cultural-evolution-emotion-song-lyrics
‘Model-based’ biases describe from whom people learn: for example, a success bias describes a tendency to learn from successful others, and a prestige bias a tendency to learn from prestigious (high status, respected) others. ‘Content-based’ biases describe what kind of information people learn best, owing to its salience or memorability. For example, a bias to transmit emotionally salient content
not defined in this paper's own words; copying proportional to recent population frequency
brand2019-cultural-evolution-emotion-song-lyrics
A control for unbiased transmission is implemented by including an effect for the average number of positive (or negative) words of all songs in the preceding three years. This assumes that the probability that any given word in a song is positive (or negative) increases as the frequency of positive (or negative) words in the population of recent songs increases.
not defined in this paper's own words; validation label for unusable imagery
venter2016-global-terrestrial-human-footprint-maps
For the visual interpretation, the extent of built environments, crop lands, pasture lands, roads, human settlements, infrastructures and navigable waterways, were recorded using a standard key for identifying these features ( Supplementary Appendix 1 ). Shape, size, texture and colour of features in the imagery were important characteristics for identifying human pressures on the environment. Int
not defined in this paper's own words; an abstract that explicitly states the cause is not yet determined - a stated position of doubt, distinct from silence
cook2013-climate-consensus
An ‘Uncertain’ abstract explicitly states that the cause of global warming is not yet determined (e.g., ‘…the extent of human-induced global warming is inconclusive…’) while a ‘No Position’ abstract makes no statement on AGW.
not defined in this paper's own words; percentile intervals over posterior draws
ferrari2024-global-burden-371-diseases
GBD 2021 metrics were estimated as counts, all-age and age-specific rates per 100 000 population, and age-standardised rates per 100 000 population, calculated using the GBD standard population structure. We present percentage changes over specified time periods (eg, 2010–21), and annualised rates of change as the difference in the natural log of the values at the start and end of the time interva
not defined in this paper's own words; posterior-draw intervals reported for every metric
vos2020-global-burden-369-diseases
In GBD 2019, we designated a set of standard locations that included all countries and territories as well as the subnational locations for Brazil, China, India, and the USA. Coefficients of covariates in the three main modelling tools were estimated for these standard locations only—ie, we ignored data from subnational locations other than for Brazil, China, India, and the USA ( appendix 1 sectio
not defined in this paper's own words; estimated bounds around mortality or scenario projections
mathers2006-projections-global-mortality-burden-disease
There remain, however, a large number of methodological and empirical challenges to more reliably estimating global, regional, and national disease burden. For regions with limited death registration data, such as the Eastern Mediterranean region, sub-Saharan Africa, and parts of Asia and the Pacific, there is considerable uncertainty in estimates of deaths by cause. Uncertainty ranges for all-cau
not defined in this paper's own words; the interval the paper insists a cell-count estimate must carry, and whose absence is its criticism of the prior literature
sender2016-revised-estimates-for-the-number-o
The aim of this study is to critically revisit former estimates for the number of human and bacterial cells in the human body. We give up-to-date detailed estimates where the calculation logic and sources are fully documented and uncertainty ranges are derived.
A research study which is planned, designed and conducted without consultation or involvement from the public or where the public involvement is claimed but not explained or evaluated.
hughes2018-public-involvement-concept-analysis
research done 'to' people rather than 'with' people
hughes2018-public-involvement-concept-analysis
This model can be characterised as research done ‘to’ people rather than ‘with’ people.
not defined in this paper's own words; protein sequence and annotation resource
wilkinson2016-fair-guiding-principles-data-stewardship
UniProt 26 : UniProt is a comprehensive resource for protein sequence and annotation data. All entries are uniquely identified by a stable URL, that provides access to the record in a variety of formats including a web page, plain-text, and RDF (‘F’ and ‘A’). The record contains rich metadata (‘F’) that is both human-readable (HTML) and machine-readable (text and RDF), where the RDF formatted resp
not defined in this paper's own words; short name for the Universal Protein Resource
varadi2021-alphafold-protein-structure-database
Proteins are essential macromolecules with vital biological functions and, thus, are involved in a wide range of research activities and medical and biotechnological applications, from fighting infectious diseases to tackling environmental pollution ( 1 , 2 ). Knowledge of the three-dimensional (3D) arrangement of the atoms of a protein can provide essential clues to understanding the roles and me
not defined in this paper's own words; small checks of one software feature
wilson2017-good-enough-practices-scientific-computing
Unit tests . A unit test is a small test of 1 particular feature of a piece of software. Projects rely on unit tests to prevent regression, i.e., to ensure that a change to 1 part of the software doesn't break other parts. While unit tests are essential to the health of large libraries and programs, we have found that they usually aren't compelling for solo exploratory work (note, for example, the
not defined in this paper's own words; tests of one unit of code
wilson2014-best-practices-scientific-computing
The second layer of defense is automated testing . Automated tests can check to make sure that a single unit of code is returning correct results ( unit tests ), that pieces of code work correctly when combined ( integration tests ), and that the behavior of a program doesn't change when the details are modified ( regression tests ). These tests are conducted by the computer, so that they are easy
A UDL approach to curriculum design embeds flexibility and choice in order to make learning accessible to the widest possible range of students.
hamilton2023-compassionate-pedagogy-neurodiversity
not defined in this paper's own words; an evidence-based framework for planning inclusive lessons
attwood2022-multiple-intelligences-semantics
There should be more literature specifically on the teacher educator perspective on how to teach MI theory to preservice teachers in comparison to Understanding by Design (UbD) and Universal Design for Learning (UDL).
A CATEGORY BUILT BY MERGING TWO OF GUST'S: `In Gust's study, they CORRESPONDED WITH the immunisation advocates OR go along to get along groups`. Two source categories, one target, and the merge is stated but not justified
leask2012-communicating-with-parents-about-v
These parents vaccinate, or want to, vaccinate their children and have no specific questions about the safety and necessity of vaccines. In Gust’s study, they corresponded with the ‘immunisation advocates’ or ‘go along to get along’ groups who see the importance of childhood vaccination and are confident in its safety
not defined in this paper's own words; 30-40% - parents who vaccinate with no specific questions about safety or necessity
leask2012-communicating-with-parents-about-v
Five distinct parental groups were identified: the ‘unquestioning acceptor’ (30–40%), the ‘cautious acceptor’ (25–35%); the ‘hesitant’ (20–30%); the ‘late or selective vaccinator’ (2–27%); and the ‘refuser’ of all vaccines (<2%).
The models investigated can be roughly divided in two categories: models with supervised and unsupervised plasticity rules. In models with supervised plasticity rules, the synapses are updated according the activity of the network and an error signal that carries information about the difference between the current network dynamics and the one that it is expected to learn by the network (Sussillo and Abbott, 2009 ; Laje and Buonomano, 2013 ; Memmesheimer et al., 2014 ; Rajan et al., 2016 ). In models with unsupervised plasticity rules, sequential dynamics is shaped by external stimulation without an error signal (Jun and Jin, 2007 ; Liu and Buonomano, 2009 ; Fiete et al., 2010 ; Waddington et al., 2012 ; Okubo et al., 2015 ; Veliz-Cuba et al., 2015 ). In those models SA is generated spontaneously, and the temporal statistics of the stimulation shapes the specific timing of the sequences.
Pereira2020-unsupervised-learning-of-persistent-and-sequ
requiring no a priori number, identity or composition of subpopulations
wang2016-transcriptional-heterogeneity-modelling
Importantly, CAM requires no a priori information on the number, identity, or composition of the subpopulations present in mixed samples, and does not require the presence of pure subpopulations in sample space.
not defined in this paper's own words; the users who answer questions, test the platform, and contribute improvements
afgan2018-galaxy-platform-accessible-reproducible-collaborative
The Main Galaxy server has over 124 000 registered users and ∼2000 new users register each month. On average, 20 000 unique users execute over 245 000 analysis jobs by accessing 750 different tools every month. With such an active user-base, questions on platform and tool usage, as well as general research questions ( 41 ), are common. To efficiently assist users in performing research, we provide
not defined in this paper's own words; users who test software, propose improvements, help peers, and often become developers
gentleman2004-bioconductor-open-software-development
The success of any software project rests on its ability to both provide solutions to the problems it is addressing and to attract a user community. Perhaps the most effective way of addressing user needs is through an e-mail help list and one was set up as soon as the project became active. In addition it is important to keep a searchable archive available so that the system itself has a memory a
not defined in this paper's own words; non-incentive comparison condition
vlaev2019-financial-incentives-health-behavior
Similarly, an immediate financial incentive has been shown to improve adherence to anti-psychotic medications [ 50 ]. This trial offered a £15 incentive to one group of patients for each medication taken, whilst a second group received usual care. The majority of patients and clinicians felt positive about the use of incentives, and the costs were relatively low. Patients receiving the incentive w
standard care without any additional component
mohler2015-credeci-2-guideline
not defined in this paper's own words; affect tied to practical consequences outside aesthetic distance
mastandrea2019-art-wellbeing-aesthetic-emotion
This “psychological distance” account underpins the difference between art-specific emotions and utilitarian emotions ( Frijda, 1988 ; Scherer, 2005 ).
not defined in this paper's own words; goal-instrumental emotional response
menninghaus2017-measuring-aesthetic-emotions
Second, in contrast to utilitarian emotions [ 32 , 33 ], the intrinsic aesthetic appeal of a stimulus rather than its instrumentality for achieving personal goals elicits aesthetic emotions. This consideration is particularly important when studying aesthetic emotions outside the traditional arts, such as responses to consumer products. For instance, Desmet [ 16 ] identified six sources of emotion
AS AN OPEN PROBLEM, WORST WHERE THE INTEREST IS GREATEST: the author states it may be hard to confirm a NISQ device is giving the right answer, and that this bites hardest on the quantum simulation problems physicists most want to run
preskill2018-nisq
it may be hard to validate that a quantum computer is really giving the right answer. That’s particularly true for the quantum simulation problems physicists are excited about. So it’s important for researchers to continue seeking better methods for verifying the output of a quantum computer
not defined in this paper's own words; ten-percent model-selection split
rajkomar2018-scalable-accurate-deep-learning-electronic-health-records
Patients were randomly split into development (80%), validation (10%), and test (10%) sets. Model accuracy is reported on the test set, and 1000 bootstrapped samples were used to calculate 95% confidence intervals. To prevent overfitting, the test set remained unused (and hidden) until final evaluation.
not defined in this paper's own words; degree to which the scale measures its intended construct
boateng2018-best-practices-developing-validating-scales
Scale development and validation are critical to much of the work in the health, social, and behavioral sciences. However, the constellation of techniques required for scale development and evaluation can be onerous, jargon-filled, unfamiliar, and resource-intensive. Further, it is often not a part of graduate training. Therefore, our goal was to concisely review the process of scale development i
not defined in this paper's own words; one criterion for an explanation insight
kung2023-chatgpt-usmle-medical-education
Having established the accuracy and concordance of ChatGPT, we next examined its potential to augment human learning in the domain of medical education. AI-generated explanations were independently adjudicated by 2 physician reviewers. Explanation content was examined for significant insights, defined as instances that met the criteria (see S2 Data ) of novelty , nonobviousness , and validity . Th
refers to the extent to which the concept accurately captures the phenomena it is intended to describe
deppe2024-cognitive-warfare-concept
artistic/aesthetic sense versus monetary/economic sense; each artwork is labelled on two opposing value axes
social-reputation-influences-on-liking
We used images of real artworks of human artists, which was also communicated to the participants. We labeled the artworks along artistic and monetary values. We operationalized this by presenting in each trial triplets of three similar artworks (see Fig 1 for stimulus example and study design). These were presented together with labels explained as indicating ascending order of levels of artistry
discounted reward plus the temporally integrated utility of anticipation
mellers2016-savouring-prediction-error-choice
The value of the pre-reward cue is determined by what follows the cue, which, under conventional temporal difference (TD) learning, would have been the reward itself ( Figure 1A-(i) ), discounted in time with a rate γ . Here, however, in addition to the reward itself, we have the anticipation of the reward that takes place continuously over time. Thus the total value of the predictive cue, Q is th
not defined in this paper's own words; variance of estimates of a neuron's error contribution
lillicrap2016-random-synaptic-feedback-backpropagation
The reason for this is that as the number of neurons in a network increases, so does the variance in estimates of a neuron's contribution to the error 12 .
not defined in this paper's own words; what the fits explain - 13% for the spatial fit, 50% to 95% for the spike-to-fluorescence model
Wong2019-tonotopic-and-non-auditory-organization-of-t
The model could explain between 50% and 95% of the variance in the fluorescence (median: 79%; average ±s.d.: 77 ± 13%).
not defined in this paper's own words; a statistic calculated to check for multicollinearity among predictors
nonaka2023-hikikomori-definition-outing-frequency
The Variance Inflation Factor (VIF) was calculated to check for multicollinearity.
not defined in this paper's own words; camera dependence adjustment
ritchie2015-limma-differential-expression
More sophisticated competitive tests that take into account dependence between the genes in the linear modelling framework are implemented in the camera function ( 56 ). Camera computes a variance inflation factor from the inter-gene correlation and uses this to adjust the variance of the summary statistics. This avoids optimistic P -values in the test results, but also reduces statistical power.
not defined in this paper's own words; diagnostic for predictor multicollinearity
harrison2018-mixed-effects-modelling-ecology
With the desired set of predictors identified, it is wise to check for collinearity among predictor variables. Collinearity among predictors can cause several problems in model interpretation because those predictors explain some of the same variance in the response variable, and their effects cannot be estimated independently ( Quinn & Keough, 2002 ; Graham, 2003 ): First, it can cause model conv
not defined in this paper's own words; deep generative models compressing expression data into latent spaces
szklarczyk2022-string-database
To address that, in the latest version we have utilized a novel method called FAVA (Functional Associations using Variational Autoencoders) ( 68 ) to build STRING’s co-expression network. This deep-learning model reduces the dimensionality of the data into lower-dimensional latent spaces using variational autoencoders (VAE). The benefit of encoding the matrices into fewer dimensions is 2-fold: it
not defined in this paper's own words; one family of machine-learning approaches used for graph generation
reiser2022-graph-neural-networks-materials-chemistry
Machine learning approaches for graph generation are promising because they can directly learn to generate realistic graphs from the distribution of observed data while accommodating goal-directed tasks such as property optimization. Examples include variational autoencoders (VAEs) 134 , generative adversarial networks (GANs) 135 , reinforcement learning 136 , recurrent neural networks (RNNs) 137
not defined in this paper's own words; VQE, the name for the same hybrid quantum-classical procedure when applied to quantum low-energy problems
preskill2018-nisq
When applied to classical combinatorial optimization problems, this procedure goes by the name Quantum Approximate Optimization Algorithm (QAOA) [24]. But it can also be applied to quantum problems, like finding low-energy states of many-particle quantum systems (large molecules, for example). When applied to quantum problems this hybrid quantum-classical procedure goes by the name Variational Qua
not defined in this paper's own words; variational minimisation of energy with a parameterised quantum circuit
grimsley2019-adapt-vqe-quantum-computer
In order to reduce the significant hardware demands required by PEA and exploit the capabilities of noisy intermediate-scale quantum (NISQ) devices 9 , the variational quantum eigensolver (VQE) algorithm was proposed and demonstrated using photonic qubits by Peruzzo et al. 10 .
not defined in this paper's own words; software storing project snapshots, history, and collaboration metadata
wilson2014-best-practices-scientific-computing
The standard solution in both industry and open source is to use a version control system (3b) (VCS) [27] , [47] . A VCS stores snapshots of a project's files in a repository (or a set of repositories). Programmers can modify their working copy of the project at will, then commit changes to the repository when they are satisfied with the results to share them with colleagues.
a system such as Subversion, Git, or Mercurial that stores code states throughout development
sandve2013-ten-simple-rules-reproducible-computational-research
The standard solution to track evolution of code is to use a version control system [15] , such as Subversion, Git, or Mercurial. These systems are relatively easy to set up and use, and may be used to systematically store the state of the code throughout development at any desired time granularity.
not defined in this paper's own words; tools recording file changes and synchronizing contributors
wilson2017-good-enough-practices-scientific-computing
Keeping track of changes that you or your collaborators make to data and software is a critical part of research. Being able to reference or retrieve a specific version of the entire project aids in reproducibility for you leading up to publication, when responding to reviewer comments, and when providing supporting information for reviewers, editors, and readers. We believe that the best tools fo
tools storing snapshots and automatically recording who changed what and when
wilson2017-good-enough-practices-scientific-computing
A version control system stores snapshots of a project's files in a repository. Users modify their working copy of the project, then save changes to the repository when they wish to make a permanent record and/or share their work with colleagues. The version control system automatically records when the change was made and by whom, along with the changes themselves.
not defined in this paper's own words in this sentence
mackay2020-how-directed-is-a-directed-network
We consider directed networks (also known as directed graphs or digraphs) with set N of nodes (also known as vertices) and set E of directed edges (also known as links or ties).
not defined in this paper's own words; graph components representing entities or objects
reiser2022-graph-neural-networks-materials-chemistry
In the most general sense, graphs are used to describe abstract structures consisting of entities or objects represented as vertices (or nodes) and their connections, called edges.
a diagnosis made from symptoms, not mechanisms
cha2023-vestibular-migraine-concept
Currently, vestibular migraine is diagnosed based on symptoms rather than mechanisms.
a primary disorder without a structural cause
cha2023-vestibular-migraine-concept
a negative health outcome of VC use
doring2022-videoconference-fatigue
an undisputed experience with disputed causes
doring2022-videoconference-fatigue
While there is not much controversy around the experience of fatigue, causal factors are highly disputed and, hence, the focus of this conceptual analysis.
the experience of physical, cognitive and emotional fatigue and exhaustion related to videoconference use regardless of the specific VC system used
doring2022-videoconference-fatigue
not defined in this paper's own words; VASOACTIVE INTESTINAL PEPTIDE-expressing interneurons - the peptide, not the ventral intraparietal area of Pitkow2015; cast as the ENABLERS via VIP inhibition of SOMs
Kumar2023-cell-type-specific-plasticity-of-inhibitory
This result combined with the strong VIP to SOM connection suggests that, during recovery after trauma, SOMs are more inhibited compared to the control state.
not defined in this paper's own words; here, GLUTAMATERGIC STELLATE CELLS WITH SUSTAINED FIRING PATTERNS - excitatory PRINCIPAL neurons of the midbrain, labeled by the same Cre line that labels GABAergic interneurons in cortex
Goyernd-a-novel-class-of-inferior-colliculus-princip
Here, by combining molecular, morphological, and physiological analyses, we identify vasoactive intestinal peptide (VIP) neurons as a novel class of IC principal neurons.
not defined in this paper's own words; HIV disease marker
bull2020-world-health-organization-physical-activity-sedentary-behaviour-guidelines
Given that large numbers of people are currently living with HIV and that antiretroviral therapy has become effective and widely available, HIV is now considered a chronic condition. Thus, evidence on people living with HIV are included in these guidelines for the first time. There was moderate-certainty evidence that in people living with HIV, physical activity enhances health-related quality of
not defined in this paper's own words; genome copies per millilitre in the lavage fluid
wu2020-new-coronavirus-respiratory-disease-china
To investigate the possible aetiological agents associated with this disease, we collected bronchoalveolar lavage fluid (BALF) and performed deep meta-transcriptomic sequencing. The clinical specimen was handled in a biosafety level 3 laboratory at Shanghai Public Health Clinical Center. Total RNA was extracted from 200 μl of BALF and a meta-transcriptomic library was constructed for pair-end (150
not defined in this paper's own words; qPCR quantity that increased during culture
zhou2020-a-pneumonia-outbreak-associated-wi
We next successfully isolated the virus (called 2019-nCoV BetaCoV/Wuhan/WIV04/2019) from both Vero E6 and Huh7 cells using the BALF sample of patient ICU-06. Clear cytopathogenic effects were observed in cells after incubation for three days (Extended Data Fig. 6a, b ). The identity of the strain WIV04 was verified in Vero E6 cells by immunofluorescence microscopy using the cross-reactive viral N
not defined in this paper's own words
zhang2022-metaverse-in-education-definition
Owing to the breakthrough of VR (virtual reality), AR (augmented reality), AI (artificial intelligence), blockchain, etc., the metaverse, a 3D digital space with collapsed virtual and real boundaries, has provoked increasing attention.
not defined in this paper's own words; the paper sets out several rival definitions and draws their shared features
cipresso2018-virtual-augmented-reality-research
In the last 5 years, virtual reality (VR) and augmented reality (AR) have attracted the interest of investors and the general public
not defined in this paper's own words; computational prioritization of candidate compounds
jiang2021-graph-neural-networks-molecular-representation
The present study attempts to give a comprehensive evaluation of descriptor-based and graph-based models on 11 public datasets with different property endpoints. Four ML algorithms were used to develop the descriptor-based models, including SVM, extreme gradient boosting (XGBoost), RF and deep neural networks (DNN). In order to better represent the chemical and structure features of the molecules
not defined in this paper's own words; large-scale computational screening enabled by fingerprints
daina2017-swissadme-free-web-tool
Cheminformaticians developed different molecular descriptors mined from chemical structures. One of the most popular examples is the molecular fingerprint (FP), which consists in a sequence of bits defining the presence or absence of chemical features in a molecule. The FP2 method 9 is one archetype of topological (or path-based) FP, which considers all fragments of the molecular structure followi
The viscosity is defined as G ″ ( ω ) / ω at ω = 1 Hz, where G ″ ( ω ) is the loss modulus at the measurement frequency ω.
liao2023-viscoelasticity-collective-bacteria-motion
Namely, the elasticity of the solution increases spatial correlation length, whereas the viscosity mainly results in motion slowing down and, in turn, increasing the correlation time.
only one of a number of relevant parameters affecting liquid flow
cichero2017-iddsi-framework-definitions
not defined in this paper's own words; one analysis capability included in Scanpy
wolf2018-scanpy-large-scale-single-cell-gen
Scanpy is a scalable toolkit for analyzing single-cell gene expression data. It includes methods for preprocessing, visualization, clustering, pseudotime and trajectory inference, differential expression testing, and simulation of gene regulatory networks
not defined in this paper's own words; interactive and static rendering of biological data and models
gentleman2004-bioconductor-open-software-development
Among the strengths of R are its data and model visualization capabilities. Like many other areas of R these capabilities are still evolving. We have been able to quickly develop plots to render genes at their chromosomal locations, a heatmap function, along with many other graphical tools. There are clear needs to make many of these plots interactive so that users can query them and navigate thro
not defined in this paper's own words; arousal component of consciousness
gervais2023-a-scoping-review-for-building-a-criticality
Though scientists and philosophers have not established a single definition of consciousness, it is generally agreed that conscious beings are aware of themselves, their surroundings, and their own perception. As such, consciousness is thought to require the dual capacity for wakefulness (arousal) and awareness of oneself and the environment ( Blume et al., 2015 ). In healthy individuals, wakefuln
not defined in this paper's own words; the reference state
Chen2019-differential-cell-type-dependent-brain-state
For the comparison between anesthesia and wakefulness, the sample size of each state was different, therefore unpaired Mann–Whitney U test was used; for the comparison between locomotion and stationary periods, the sample size of each state was identical, therefore paired Wilcoxon signed-rank test was used.
binding, blocking, and neutralization measures all decline after roughly the first month, especially after mild or asymptomatic infection
roltgen2020-defining-the-features-and-duration
There is an urgent need to understand how long antibody titers against the virus persist after infection, now that the pandemic has been underway for more than half a year in many countries, and initial case reports of proven reinfection by SARS-CoV-2 have begun to appear ( 37 , 38 ). Studies differing in their patient populations, disease severity, and serological assays, have disagreed on the du
not defined in this paper's own words; declining levels that bias seroprevalence
roltgen2020-defining-the-features-and-duration
A limitation of our study is that, apart from the prospective validation cohort, the sampling time points for each patient were determined by their length of hospital stay and subsequent healthcare visits, enabling more detailed analysis of serological responses in patients with more severe illness. It is important to note that decreasing antibody levels do not necessarily indicate that all immuni
not defined in this paper's own words; experimental heating of about 2 °C by infrared heaters
ma2017-climate-warming-plant-biomass-stability
Warming significantly reduced the temporal stability of plant community biomass by an average of 23.2% (linear mixed-effects model: P =0.04; Fig. 2a ), whereas precipitation alteration did not affect community biomass stability
not defined in this paper's own words; rising environmental temperature
sandblom2016-fish-climate-warming-physiological-constraints
The first hypothesis suggests that warming causes a gradual decline in physiological performance
not defined in this paper's own words; the rise in global-mean surface temperature under greenhouse forcing
pendergrass2017-precipitation-variability-warmer-climate
Here, we show that precipitation variability in most climate models increases over a majority of global land area in response to warming (66% of land has a robust increase in variability of seasonal-mean precipitation).
not defined in this paper's own words; how much water a region or season has, which the paper measures by the aridity index
tabari2020-climate-flood-extreme-precipitation
The climatological water availability is determined based on the aridity index (AI), as the ratio between potential evapotranspiration (water demand) and precipitation (water supply)
not defined in this paper's own words; the water left for use once evaporation is subtracted from precipitation
konapala2020-climate-change-global-water-availability
may result in changes in water availability (WA) that have implications for both humans and the biosphere
natural abiotic degradation processes of chemical and mechanical nature
romera-castillo2018-plastics-dissolved-organic-carbon
not defined in this paper's own words; time-dependent physico-chemical change of plastic in the environment
ross2021-polyester-fibres-arctic-ocean
These weathering changes to the surface of MPs can hamper their identification by Fourier transform infrared spectrometry (FTIR), but also have the potential to inform the characterization of MP transport and fate processes in the environment
not defined in this paper's own words; browser interface for descriptor calculation
moriwaki2018-mordred-molecular-descriptor-calculator
Mordred is also available as a web application (Fig. 3 ). The web interface is available when the Mordred web module is executed (to this end, the Mordred web package is required; the method to install this package is explained in the GitHub repository). The web interface enables beginners to easily calculate descriptors and study QSAR. In addition, Mordred can be installed on a server by an admin
not defined in this paper's own words; interactive checklist completion tool
page2021-prisma-systematic-review-reporting-guideline
We recommend authors refer to PRISMA 2020 early in the writing process, because prospective consideration of the items may help to ensure that all the items are addressed. To help keep track of which items have been reported, the PRISMA statement website ( http://www.prisma-statement.org/ ) includes fillable templates of the checklists to download and complete (also available in the data supplemen
not defined in this paper's own words; the first-ranked criterion in the ballot
cederholm2019-glim-criteria-for-the-diagnosis-of
Weight loss, reduced BMI, and reduced muscle mass were categorized as phenotypic criteria, and reduced food intake/assimilation and disease burden/inflammation as etiologic criteria (Table 3 and Figure 1 ). For the diagnosis of malnutrition, GLIM recommends that the combination of at least one phenotypic criterion and one etiologic criterion is required (Table 3 and Figure 1 ). The selection of th
not defined in this paper's own words; intermediate health outcome targeted by incentive programs
vlaev2019-financial-incentives-health-behavior
A range of tools are at the disposal of policy makers seeking to influence behavior including legislation, price signals (taxes and subsidies) and information campaigns. Although the use of incentives in wider public policy is nothing new, their role in encouraging health behaviors is a relatively recent phenomenon [ 4 ]. Incentives can take a number of forms including cash or alternatively vouche
an individual's wellbeing is strong only when the impact on family, community and culture is positive
garvey2021-aboriginal-wellbeing-model
In this way, it was understood that for an individual’s wellbeing to be strong, the impact of the critical parts of life on the individuals’ family, community and culture needed to be positive and supportive of the collective.
culturally bound and is shaped by many aspects of life, including experiences, beliefs and values
garvey2021-aboriginal-wellbeing-model
a combination of constant sound frequency variations within the environment
liu2022-definition-of-noise
not defined in this paper's own words; the input, chosen to probe the whole response space
Levi2022-error-correction-and-improved-precision-of-s
As input, we used filtered Gaussian white noise (WN) signals, composed of a rich set of waveforms and spectral components.
not defined in this paper's own words; high-resolution digitised glass slides
litjens2016-deep-learning-histopathology
Digital whole slide images (WSI) allow the application of image analysis techniques to aid pathologists in the examination and quantification of slides 5 .
not defined in this paper's own words; very large digitized pathology slides
bankhead2017-qupath-open-source-digital-pathology
In recent years, a vibrant ecosystem of open source bioimage analysis software has developed. Led by ImageJ 3 , researchers in multiple disciplines can now choose from a selection of powerful tools, such as Fiji 4 , Icy 5 , and CellProfiler 6 , to perform their image analyses. These open source packages encourage users to engage in further development and sharing of customized analysis solutions i
working memory
oberauer2019-working-memory-attention
Working memory (WM) has been defined as a cognitive process for temporary storage of task-relevant information for goal-directed behaviors ( D’Esposito, 2007 ; Sreenivasan et al., 2014 ). The information can be related to past sensory events (e.g., short-term sensory memory), or to future sensory events (e.g., sensory prediction) or actions. The two types of information have been termed the retrospective and prospective codes, respectively, and both can be stored in WM to bridge sensory events or their contingent behavioral actions
Huang2016-persistent-neural-activity-in-auditory-corte
biological: three consecutive amino acids, defined outright as the unit that plays the role a word plays in text
asgari2015-protvec
The same procedure is applied on all 546,790 sequences in Swiss-Prot, thus at the end we obtain a corpus consisting of 546,790 × 3 = 1,640,370 sequences of 3-grams (3-gram is a “biological” word consisting of 3 amino acids).
in natural language: a semantic or syntactic unit whose meaning is fixed by the words around it
asgari2015-protvec
Continuous vector representation, as a distributed representation for words, has been recently established in natural language processing (NLP) as an efficient way to represent semantic/syntactic units with many applications.
not defined in this paper's own words; linked analysis operations
bankhead2017-qupath-open-source-digital-pathology
In recent years, a vibrant ecosystem of open source bioimage analysis software has developed. Led by ImageJ 3 , researchers in multiple disciplines can now choose from a selection of powerful tools, such as Fiji 4 , Icy 5 , and CellProfiler 6 , to perform their image analyses. These open source packages encourage users to engage in further development and sharing of customized analysis solutions i
not defined in this paper's own words; reusable executable pipelines generated interactively or edited directly
afgan2018-galaxy-platform-accessible-reproducible-collaborative
There are two common modes of data analysis: exploratory and pipeline execution. Galaxy enables simultaneous access to both of these. Users are able to interactively analyze their data by making use of individual tools in a trial-and-error manner. They are then able to automatically generate reusable and generalizable workflows from an ad hoc analysis. An interactive workflow editor is also availa
not defined in this paper's own words; the modifiable local project state
wilson2014-best-practices-scientific-computing
The standard solution in both industry and open source is to use a version control system (3b) (VCS) [27] , [47] . A VCS stores snapshots of a project's files in a repository (or a set of repositories). Programmers can modify their working copy of the project at will, then commit changes to the repository when they are satisfied with the results to share them with colleagues.
not defined in this paper's own words; user-modified project state before changes are saved
wilson2017-good-enough-practices-scientific-computing
A version control system stores snapshots of a project's files in a repository. Users modify their working copy of the project, then save changes to the repository when they wish to make a permanent record and/or share their work with colleagues. The version control system automatically records when the change was made and by whom, along with the changes themselves.
Working memory (WM) has been defined as a cognitive process for temporary storage of task-relevant information for goal-directed behaviors ( D’Esposito, 2007 ; Sreenivasan et al., 2014 ).
Huang2016-persistent-neural-activity-in-auditory-corte
processes ( Massaro, 1972 ; Crowder, 1982 ), including Atkinson and Shiffrin’s short-term store, which evolved into the working memory (WM) construct (see, e.g., Logie and Cowan, 2015 ). WM receives input from sensory memory about recent perceptual experiences, maintains and manipulates information during in-progress cognitive activities, and interfaces with long-term memory to reinstate information from the latent, permanent corpus of previous experiences.
Nees2016-have-we-forgotten-auditory-sensory-memory-re
not defined in this paper's own words; global protected-area input
venter2014-targeting-global-protected-area-expansion-biodiversity
Using new data from the World Database on Protected Areas [3] and distribution maps for 4,118 globally threatened birds [8] , mammals [9] , [10] , and amphibians [10] , [11] , as well as ecoregions [12] , we first perform a gap analysis to determine the representation of these species in the current global protected area network. We then use a systematic conservation planning framework [13] to bui
not defined in this paper's own words; the global register of protected area boundaries
gray2016-local-biodiversity-protected-areas
allowing selection of comparably surveyed sites located inside and outside protected areas by intersecting with the World Database on Protected Areas (WDPA) 34 .
not defined in this paper's own words; the method used to check that the PEDOT:PSS network is chemically unchanged
feig2018-conductive-interpenetrating-network-hydrogels
Finally, X-ray photoelectron spectroscopy (XPS) measurements on PEDOT:PSS and C-IPN suggest that the PEDOT:PSS network is chemically unaffected by the presence of PAAc.
not defined in this paper's own words; the surface-sensitive method used for composition and electronic effects
hao2022-electronegativity-high-entropy-alloy-electrocatalysts
X-ray photoelectron spectroscopy (XPS) was utilized to investigate the surface compositions and electronic effects of the as-prepared FeCoNiMnRu/CNFs.
X-ray absorption fine structure
rost2015-entropy-stabilized-oxides
X-ray absorption fine structure spectroscopy
lei2016-tin-quantum-sheets-co2-reduction
a way to probe the local environment of a specific element from the interference between an emitted core electron and backscattering from surrounding species
rost2015-entropy-stabilized-oxides
This technique provides a unique way to probe the local environment of a specific element based on the interference between an emitted core electron and the backscattering from surrounding species.
not defined in this paper's own words; labelled-array implementation built on NumPy
harris2020-array-programming-numpy
The community’s efforts to fill this gap led to a proliferation of new array implementations. For example, each deep-learning framework created its own arrays; the PyTorch 38 , Tensorflow 39 , Apache MXNet 40 and JAX arrays all have the capability to run on CPUs and GPUs in a distributed fashion, using lazy evaluation to allow for additional performance optimizations. SciPy and PyData/Sparse both
an open-source Python project providing labeled N-dimensional array structures and analytics
hoyer2017-xarray-labeled-arrays-datasets-python
xarray is an open source project and Python package that provides a toolkit and data structures for N-dimensional labeled arrays. Our approach combines an application programing interface (API) inspired by pandas with the Common Data Model for self-described scientific data. Key features of the xarray package include label-based indexing and arithmetic, interoperability with the core scientific Py
a boosting tree model
cai2021-surrogate-models-machine-learning
a regularized and subsampled gradient-boosting ensemble
jiang2021-graph-neural-networks-molecular-representation
XGBoost is one of the most representative ensemble learning ML algorithms under the frame of gradient boosting [ 51 ]. Compared with traditional gradient boosting, several algorithm optimizations were introduced to XGBoost, such as minor improvement in the loss function by penalizing the complexity of the model, introduction of shrinkage and column subsampling for further preventing over-fitting,
not defined in this paper's own words; descriptor-based gradient-boosting model
jiang2021-graph-neural-networks-molecular-representation
The present study attempts to give a comprehensive evaluation of descriptor-based and graph-based models on 11 public datasets with different property endpoints. Four ML algorithms were used to develop the descriptor-based models, including SVM, extreme gradient boosting (XGBoost), RF and deep neural networks (DNN). In order to better represent the chemical and structure features of the molecules
X-ray photoelectron spectroscopy
feig2018-conductive-interpenetrating-network-hydrogels, hao2022-electronegativity-high-entropy-alloy-electrocatalysts
X-ray photon spectroscopy
bharti2016-tio2-oxygen-vacancies-plasma
not defined in this paper's own words; non-fatal health loss
vos2020-global-burden-369-diseases
GBD 2019 estimated each epidemiological quantity of interest—incidence, prevalence, mortality, years lived with disability (YLDs), years of life lost (YLLs), and disability-adjusted life-years (DALYs)—for 23 age groups; males, females, and both sexes combined; and 204 countries and territories that were grouped into 21 regions and seven super-regions. For GBD 2019, nine countries and territories (
non-fatal health loss
ferrari2024-global-burden-371-diseases
not defined in this paper's own words; YLD disability component needed to project DALYs
mathers2006-projections-global-mortality-burden-disease
The burden of disease estimates for 2002 were used as a base for projections of burden of disease to 2030. Years of life lost (YLL) were calculated from the projections of mortality by cause, age, and sex, according to the GBD method. To project DALYs, it is also necessary to project years lived with disability (YLD). Given the lack of good information on trends in disability and health state dist
not defined in this paper's own words; fatal health loss against standard life expectancy
vos2020-global-burden-369-diseases
GBD 2019 estimated each epidemiological quantity of interest—incidence, prevalence, mortality, years lived with disability (YLDs), years of life lost (YLLs), and disability-adjusted life-years (DALYs)—for 23 age groups; males, females, and both sexes combined; and 204 countries and territories that were grouped into 21 regions and seven super-regions. For GBD 2019, nine countries and territories (
fatal health loss
ferrari2024-global-burden-371-diseases
not defined in this paper's own words; YLL component calculated from projected mortality by cause, age, and sex
mathers2006-projections-global-mortality-burden-disease
The burden of disease estimates for 2002 were used as a base for projections of burden of disease to 2030. Years of life lost (YLL) were calculated from the projections of mortality by cause, age, and sex, according to the GBD method. To project DALYs, it is also necessary to project years lived with disability (YLD). Given the lack of good information on trends in disability and health state dist
number of years lived with disability (YLDs)
roth2020-global-burden-cardiovascular-diseases
DALYs were calculated as the sum of YLLs, based on a reference maximum observed life expectancy, and YLDs based on standardized disability weights for each health state.
years lived with disability, quantifying non-fatal health loss
ferrari2024-global-burden-371-diseases
GBD 2021 highlights new and existing health threats that require prioritisation on international public health agendas. GBD 2021 estimates will allow up to date identification of health disparities within and between populations, enabling evaluation of how these have changed over time, quantify health gains, and, in turn, identify policies or interventions that present the most promising opportuni
years lived with disability: prevalence multiplied by disability weights for mutually exclusive sequelae
vos2020-global-burden-369-diseases
GBD estimates incidence, prevalence, mortality, years of life lost (YLLs), years lived with disability (YLDs), and disability-adjusted life-years (DALYs) due to 369 diseases and injuries, for two sexes, and for 204 countries and territories. Input data were extracted from censuses, household surveys, civil registration and vital statistics, disease registries, health service use, air pollution mon
number of years of life lost (YLLs)
roth2020-global-burden-cardiovascular-diseases
DALYs were calculated as the sum of YLLs, based on a reference maximum observed life expectancy, and YLDs based on standardized disability weights for each health state.
years of life lost, quantifying fatal health loss
ferrari2024-global-burden-371-diseases
GBD 2021 highlights new and existing health threats that require prioritisation on international public health agendas. GBD 2021 estimates will allow up to date identification of health disparities within and between populations, enabling evaluation of how these have changed over time, quantify health gains, and, in turn, identify policies or interventions that present the most promising opportuni
years of life lost: deaths multiplied by standard life expectancy at each age
vos2020-global-burden-369-diseases
GBD estimates incidence, prevalence, mortality, years of life lost (YLLs), years lived with disability (YLDs), and disability-adjusted life-years (DALYs) due to 369 diseases and injuries, for two sexes, and for 204 countries and territories. Input data were extracted from censuses, household surveys, civil registration and vital statistics, disease registries, health service use, air pollution mon
calculates the net charges of a moving particle under the electric field in solution
matyusuf2020-silver-nanoparticle-synthesis-optimization
measured the electrostatic repulsion between similarly charged particles
rosli2021-graphene-nanoplatelets-pharmaceutical-removal
A definition accounts for a use when at least a third of the definition's content words, and at least two of them, appear in that use's own statement — its gloss plus the verbatim sentence licensing it. Normalising by the definition's own length keeps a four-word gloss and a thirty-word gloss comparable. A definition never gets credit for covering itself, and the term's own words are dropped, since every definition of bias contains the word bias.
Lexical overlap will always produce a number, so every term is also run against four decoy definitions taken from unrelated terms, drawn deterministically so two builds give the same control. If the best real definition does not beat the best decoy, no winner is published. Across all 1,753 terms the mean decoy reached 1% of uses.
A definition is credited only for uses in other papers. The corpus records a definition in up to three layers, so one paper often arrives as two or three rows with reworded glosses; those collapse into one definition, and a paper restating itself earns nothing. Before that rule, 3,140 terms looked as though they carried rival definitions. 1,753 of them actually do.
151 terms reached no separation from the decoy control and is not reported: acceptability, accountability, active learning, adherence, adjacency matrix, aesthetic experience, algorithm, algorithmic bias, alignment, altruism, anesthesia, anxiety, application programming interface, arousal, art, artefact, artificial intelligence, autonomy, behavior, biodiversity, biomarker, bipartite network, burnout, canonical smiles, categories, circrnas, circular rna, class, clustering, cognitive empathy, cognitive load, cognitive reflection, cognitive warfare, collaboration, compassion, complexity, concept, conceptual framework, concreteness, conjecture, consensus, context, coordinates, coral cover, criticality, darwin core, data model, dataset, deep neural network, delay, density functional theory, depression, dft, diversity, ecosystem services, effort, embodiment, engagement, episodic memory, essentialism, evolutionary distinctiveness, exosome, false discovery rate, false positive rate, false positives, feasibility, feature selection, fidelity, frame, free will, function, gender, gold standard, gut microbiota, harm, hexagonal boron nitride, highest occupied molecular orbital, homophily, immersion, inchi, inflammation, interactional asymmetry, internal consistency, internal representation, internet addiction, interpretability, kitsch, language, large language models, linkage disequilibrium, logistic regression, loneliness, macrosomia, major depressive disorder, mathematical creativity, memory, model, molecular descriptors, molecular dynamics, nature, nlr, normativity, numpy, obesity, open science, othering, overfitting, pd l1, performance, pilot study, plasticity, population, power conversion efficiency, priming, privacy, quality control, quality of life, rdkit, recall, repetition priming, reward, reward prediction error, risk of bias, robustness, sample size, schema, script, self efficacy, sensitivity, signal to noise ratio, significance, single cell rna sequencing, single nucleotide polymorphisms, singularity, small evs, social exclusion, social support, species, stability, standardization, task, theoretical saturation, threshold, training, transparency, treatment burden, trust, tumor microenvironment, viability, vulnerability, well being.
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